RchiOBHm_Chr2g0098581

Chromo (CHRromatin Organisation MOdifier) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001157
Physical Location & Seq
Reverse (-)
11017362 .. 11018292
931 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47337

Sequence Viewer

Length: 618 bp
ATGTCACCATTTCAGGCGCTATATGGTCGCCCTCCTCCTTCGCTTTCCACATACTTGCCTGGCTCAAGTAAGGTGCATGCAGTGGACACTTCCTTGCAAGCTAGAGATCAACTGTTGAAAGACCTCAAGGGTCACATGGCAACTGCGCAAAACAGAATGAAGCAGCACAGTGATCAAAATAGAACAGAGAGAGAATTCACTGTAGGGGATTGGGTGTTTTTGAAGTTACATCCATATCGCCAAAAGTCGTTGATCAAAAGGCCTACACATAAACTTTCCCCTCGCTATTATGGTCCCTTTCAAGTCGCTGCAAGAGTTGGCAAGGTTGCCTATAGATTGAACTTACCAGCTCACTCCAAGATACACCCGACATTCCATGTCTCATTGCTCAAGAAACGCATTGGTGATTCCATTCCCATTTCCACGACACTGCCACAGTTTGATTGTCACGGAGAAATCCATTGGCAGCCTCTCAAGGTTCTGGATATGGGGATCATCCGAAAGAAGAAACGTGCAGTGACTACTTGGCTTGTGCAATGGAAGGGCTTACCAGTGGAGGACGCCACATGGGAAGAAGCACATGTCATGGCAGCAAACTTCCCCAGTTTTAGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo

Protein Analysis

205

Amino Acids

23.43

Weight (kDa)

10.11

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 69 - 132 5.5e-25 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 561
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 4 cut(s) 118, 223, 302, 340
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 101, 350
AluI AGCT 2 cut(s) 101, 350
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 500
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 4 cut(s) 163, 308, 466, 590
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 3 cut(s) 19, 148, 614
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 293
BbvI GCAGC 4 cut(s) 175, 295, 478, 602
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 2 cut(s) 172, 252
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 2 cut(s) 201, 331
BfoI RGCGCY 2 cut(s) 20, 615
BisI GCNGC 4 cut(s) 164, 309, 467, 591
BlsI GCNGC 4 cut(s) 165, 310, 468, 592
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 597
BmuI ACTGGG 1 cut(s) 597
BpuEI CTTGAG 4 cut(s) 49, 110, 374, 458
BsaHI GRCGYC 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 551, 603
Bse3DI GCAATG 2 cut(s) 383, 542
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 229, 495
BseMI GCAATG 2 cut(s) 383, 542
BseNI ACTGG 2 cut(s) 551, 603
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 4 cut(s) 175, 295, 478, 602
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 4 cut(s) 106, 172, 252, 492
BspANI GGCC 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 500
BsrDI GCAATG 2 cut(s) 383, 542
BsrI ACTGG 2 cut(s) 551, 603
BssMI GATC 4 cut(s) 106, 172, 252, 492
BssNI GRCGYC 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 114, 170, 202, 438
BstACI GRCGYC 1 cut(s) 561
BstC8I GCNNGC 2 cut(s) 78, 99
BstF5I GGATG 2 cut(s) 229, 495
BstH2I RGCGCY 2 cut(s) 20, 615
BstHHI GCGC 3 cut(s) 19, 148, 614
BstKTI GATC 4 cut(s) 109, 175, 255, 495
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 4 cut(s) 106, 172, 252, 492
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 80, 584
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 201, 331
BstV1I GCAGC 4 cut(s) 175, 295, 478, 602
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 229, 495
BtsI GCAGTG 3 cut(s) 87, 428, 522
BtsIMutI CAGTG 6 cut(s) 87, 175, 198, 428, 522, 558
Cac8I GCNNGC 2 cut(s) 78, 99
CfoI GCGC 3 cut(s) 19, 148, 614
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 569
CviAII CATG 6 cut(s) 77, 136, 377, 567, 581, 586
CviJI RGCY 7 cut(s) 63, 101, 262, 350, 469, 529, 546
CviKI_1 RGCY 7 cut(s) 63, 101, 262, 350, 469, 529, 546
DpnI GATC 4 cut(s) 108, 174, 254, 494
DpnII GATC 4 cut(s) 106, 172, 252, 492
Eco147I AGGCCT 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 6 cut(s) 80, 139, 380, 570, 584, 589
FaqI GGGAC 1 cut(s) 279
FatI CATG 6 cut(s) 76, 135, 376, 566, 580, 585
FbaI TGATCA 2 cut(s) 172, 252
Fnu4HI GCNGC 4 cut(s) 164, 309, 467, 591
FokI GGATG 2 cut(s) 216, 482
Fsp4HI GCNGC 4 cut(s) 164, 309, 467, 591
FspBI CTAG 1 cut(s) 102
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 3 cut(s) 18, 147, 613
GluI GCNGC 4 cut(s) 164, 309, 467, 591
HaeII RGCGCY 2 cut(s) 20, 615
HaeIII GGCC 1 cut(s) 262
HgaI GACGC 1 cut(s) 569
HhaI GCGC 3 cut(s) 19, 148, 614
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 6 cut(s) 80, 139, 380, 570, 584, 589
Hin6I GCGC 3 cut(s) 17, 146, 612
HinP1I GCGC 3 cut(s) 17, 146, 612
HinfI GANTC 1 cut(s) 407
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 2 cut(s) 391, 482
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 48, 535
HpyCH4III ACNGT 4 cut(s) 114, 170, 202, 438
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 6 cut(s) 76, 80, 97, 311, 515, 535
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 6 cut(s) 80, 139, 380, 570, 584, 589
HspAI GCGC 3 cut(s) 17, 146, 612
Ksp22I TGATCA 2 cut(s) 172, 252
Kzo9I GATC 4 cut(s) 106, 172, 252, 492
LpnPI CCDG 5 cut(s) 45, 72, 360, 467, 564
Lsp1109I GCAGC 4 cut(s) 175, 295, 478, 602
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 5 cut(s) 3, 131, 225, 446, 517
MalI GATC 4 cut(s) 108, 174, 254, 494
MboI GATC 4 cut(s) 106, 172, 252, 492
MboII GAAGA 2 cut(s) 517, 584
MluCI AATT 1 cut(s) 194
MnlI CCTC 6 cut(s) 42, 45, 134, 291, 480, 550
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
NdeII GATC 4 cut(s) 106, 172, 252, 492
NlaIII CATG 6 cut(s) 80, 139, 380, 570, 584, 589
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 4 cut(s) 3, 131, 446, 517
NsbI TGCGCA 1 cut(s) 147
NspI RCATGY 2 cut(s) 80, 584
PaeI GCATGC 1 cut(s) 80
PceI AGGCCT 1 cut(s) 262
PciI ACATGT 1 cut(s) 580
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 4 cut(s) 165, 310, 468, 592
PscI ACATGT 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 293
SatI GCNGC 4 cut(s) 164, 309, 467, 591
Sau3AI GATC 4 cut(s) 106, 172, 252, 492
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 60
SetI ASST 7 cut(s) 75, 103, 126, 327, 352, 480, 514
SfcI CTRYAG 2 cut(s) 201, 331
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 4 cut(s) 64, 125, 389, 473
SmoI CTYRAG 4 cut(s) 64, 125, 389, 473
SphI GCATGC 1 cut(s) 80
Sse9I AATT 1 cut(s) 194
SseBI AGGCCT 1 cut(s) 262
SspMI CTAG 1 cut(s) 102
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 4 cut(s) 114, 170, 202, 438
TaiI ACGT 1 cut(s) 514
TasI AATT 1 cut(s) 194
TfiI GAWTC 1 cut(s) 407
TscAI CASTG 6 cut(s) 87, 175, 205, 435, 522, 558
TseFI GTSAC 4 cut(s) 3, 131, 446, 517
TseI GCWGC 4 cut(s) 163, 308, 466, 590
Tsp45I GTSAC 4 cut(s) 3, 131, 446, 517
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 6 cut(s) 87, 175, 205, 435, 522, 558
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 194
XceI RCATGY 2 cut(s) 80, 584
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.