Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

21818804 .. 21819421

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29724.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTCCCTTTCAGGCAGTCTATGGGATTCCACCTCCTTCGATCCAGCGTTACATTCCGGGCACTACAACCAATCATGCGGTGAATGTGGCTTTGCAAGACCGCGATGAGCTGTTGCGCAACCTCAAAGATCATCTCACCTTAGCCCAGAATCAGATGAAGCAACAAGCTGATAAGAAACGCACTGATCAGTCATTTGAGATTGGTGACTGGGTGTTTCTGAAATTGCACCCCTATCGGCAACAATCTTTGGTACGCCGCCCTTCACAGAAGCTTGCCCCTCGCTTTTATGGACCATTCCAGATTGCTGCCAAGGTTGGTTCAGTTGCCTACAAGCTCCTTCTACCAGACAATTGCAAGTTGCACCCTATTTTTCATGTGTCTCTTCTTAAACGCCGCATTGGTGATCACACACCGGTTGCTTCTACATTGCCTCAATTTGATGATCATGGCATCGTTGAGTGGAAACCAAAGCGTGTGCTCGACATGGCTATCTTCACCAAGCATCGGCGCCCAATTACGAAATGGCTTGTGGCTTGGCAGGGTCTTCCTATGGAAGATGCGACTTGGGAGGAAGCTCATGCCATGGTTGGCAGGTTTCCAGACTTTCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

206

Amino Acids

23.67

Weight (kDa)

9.77

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	2.4e-23	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	510
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	80, 103, 259, 397
AclWI	GGATC	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	511
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	507
AgeI	ACCGGT	1 cut(s)	415
AgsI	TTSAA	1 cut(s)	611
AluBI	AGCT	6 cut(s)	112, 170, 274, 337, 578, 614
AluI	AGCT	6 cut(s)	112, 170, 274, 337, 578, 614
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	9, 387
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	308
AsiGI	ACCGGT	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	120, 513
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	94, 130, 218, 416, 490
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BclI	TGATCA	3 cut(s)	187, 406, 445
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	9, 387
BfoI	RGCGCY	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	585
BisI	GCNGC	3 cut(s)	259, 309, 397
BlsI	GCNGC	3 cut(s)	260, 310, 398
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	462, 514, 550
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	312, 585
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	312, 585
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMI	GCAATG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	510
BshTI	ACCGGT	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	59, 416
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmAI	GTCTC	2 cut(s)	9, 387
Bsp1286I	GDGCHC	2 cut(s)	65, 483
Bsp143I	GATC	5 cut(s)	42, 130, 187, 406, 445
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	4 cut(s)	80, 103, 259, 397
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	512
BspMI	ACCTGC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	312, 585
BssMI	GATC	5 cut(s)	42, 130, 187, 406, 445
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	2 cut(s)	312, 585
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	585
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	120, 513
BstKTI	GATC	5 cut(s)	45, 133, 190, 409, 448
BstMAI	GTCTC	2 cut(s)	9, 387
BstMBI	GATC	5 cut(s)	42, 130, 187, 406, 445
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	2 cut(s)	120, 513
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	254
CspAI	ACCGGT	1 cut(s)	415
CviAII	CATG	6 cut(s)	77, 377, 449, 487, 581, 586
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	142
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	5 cut(s)	44, 132, 189, 408, 447
DpnII	GATC	5 cut(s)	42, 130, 187, 406, 445
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	312, 585
Eco47I	GGWCC	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	312, 585
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	312, 585
FaeI	CATG	6 cut(s)	80, 380, 452, 490, 584, 589
FaiI	YATR	9 cut(s)	24, 78, 291, 378, 450, 488, 554, 582, 587
FatI	CATG	6 cut(s)	76, 376, 448, 486, 580, 585
FbaI	TGATCA	3 cut(s)	187, 406, 445
Fnu4HI	GCNGC	3 cut(s)	259, 309, 397
Fsp4HI	GCNGC	3 cut(s)	259, 309, 397
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	2 cut(s)	119, 512
GluI	GCNGC	3 cut(s)	259, 309, 397
HaeII	RGCGCY	1 cut(s)	514
HapII	CCGG	2 cut(s)	59, 416
HhaI	GCGC	2 cut(s)	120, 513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	6 cut(s)	80, 380, 452, 490, 584, 589
Hin6I	GCGC	2 cut(s)	118, 511
HinP1I	GCGC	2 cut(s)	118, 511
HindIII	AAGCTT	2 cut(s)	272, 612
HinfI	GANTC	2 cut(s)	28, 151
HpaII	CCGG	2 cut(s)	59, 416
HphI	GGTGA	5 cut(s)	94, 130, 218, 416, 490
Hpy188I	TCNGA	2 cut(s)	156, 222
Hpy188III	TCNNGA	2 cut(s)	301, 602
HpyAV	CCTTC	3 cut(s)	48, 273, 350
HpyCH4V	TGCA	4 cut(s)	97, 229, 357, 364
HpyF3I	CTNAG	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	6 cut(s)	80, 380, 452, 490, 584, 589
HspAI	GCGC	2 cut(s)	118, 511
KasI	GGCGCC	1 cut(s)	510
Ksp22I	TGATCA	3 cut(s)	187, 406, 445
Kzo9I	GATC	5 cut(s)	42, 130, 187, 406, 445
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	9 cut(s)	59, 72, 161, 196, 314, 360, 429, 527, 580
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	3 cut(s)	462, 514, 550
MaeIII	GTNAC	2 cut(s)	50, 206
MalI	GATC	5 cut(s)	44, 132, 189, 408, 447
MboI	GATC	5 cut(s)	42, 130, 187, 406, 445
MboII	GAAGA	4 cut(s)	377, 487, 539, 569
MfeI	CAATTG	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	65, 483
MluCI	AATT	4 cut(s)	224, 352, 437, 516
Mly113I	GGCGCC	1 cut(s)	511
MnlI	CCTC	5 cut(s)	45, 134, 291, 444, 565
MseI	TTAA	1 cut(s)	390
MspI	CCGG	2 cut(s)	59, 416
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	105
NarI	GGCGCC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	5 cut(s)	42, 130, 187, 406, 445
NlaIII	CATG	6 cut(s)	80, 380, 452, 490, 584, 589
NlaIV	GGNNCC	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	206
NsbI	TGCGCA	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	28, 151
PinAI	ACCGGT	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	260, 310, 398
PluTI	GGCGCC	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	3 cut(s)	259, 309, 397
Sau3AI	GATC	5 cut(s)	42, 130, 187, 406, 445
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	65, 483
SfaNI	GCATC	3 cut(s)	462, 514, 550
SfoI	GGCGCC	1 cut(s)	512
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	224, 352, 437, 516
SsiI	CCGC	4 cut(s)	80, 103, 259, 397
SspDI	GGCGCC	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	2 cut(s)	312, 585
TaqI	TCGA	2 cut(s)	41, 483
TasI	AATT	4 cut(s)	224, 352, 437, 516
TauI	GCSGC	2 cut(s)	261, 399
TfiI	GAWTC	2 cut(s)	28, 151
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	173, 365
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.