transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Integrase_H2C2 | PF17921 | 47 - 96 | 2.9e-16 | Integrase zinc binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 30 |
| AfaI | GTAC | 2 cut(s) | 64, 101 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| ApoI | RAATTY | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 1 cut(s) | 25 |
| BlpI | GCTNAGC | 1 cut(s) | 119 |
| BmsI | GCATC | 1 cut(s) | 40 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 119 |
| BpuEI | CTTGAG | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 221 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 119 |
| BssMI | GATC | 1 cut(s) | 221 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstKTI | GATC | 1 cut(s) | 224 |
| BstMBI | GATC | 1 cut(s) | 221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 179 |
| Csp6I | GTAC | 2 cut(s) | 63, 100 |
| CviAII | CATG | 3 cut(s) | 173, 185, 241 |
| CviJI | RGCY | 2 cut(s) | 123, 171 |
| CviKI_1 | RGCY | 2 cut(s) | 123, 171 |
| CviQI | GTAC | 2 cut(s) | 63, 100 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 1 cut(s) | 223 |
| DpnII | GATC | 1 cut(s) | 221 |
| DraI | TTTAAA | 1 cut(s) | 96 |
| Eco32I | GATATC | 1 cut(s) | 253 |
| EcoRV | GATATC | 1 cut(s) | 253 |
| FaeI | CATG | 3 cut(s) | 176, 188, 244 |
| FaiI | YATR | 3 cut(s) | 174, 186, 242 |
| FatI | CATG | 3 cut(s) | 172, 184, 240 |
| Hin1II | CATG | 3 cut(s) | 176, 188, 244 |
| HphI | GGTGA | 1 cut(s) | 25 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 219 |
| HpyAV | CCTTC | 3 cut(s) | 133, 230, 241 |
| HpyCH4V | TGCA | 2 cut(s) | 28, 53 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| Hsp92II | CATG | 3 cut(s) | 176, 188, 244 |
| Kzo9I | GATC | 1 cut(s) | 221 |
| LpnPI | CCDG | 2 cut(s) | 57, 165 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeIII | GTNAC | 2 cut(s) | 13, 265 |
| MalI | GATC | 1 cut(s) | 223 |
| MboI | GATC | 1 cut(s) | 221 |
| MboII | GAAGA | 1 cut(s) | 256 |
| MluCI | AATT | 2 cut(s) | 30, 111 |
| MnlI | CCTC | 1 cut(s) | 183 |
| MseI | TTAA | 2 cut(s) | 36, 95 |
| NdeII | GATC | 1 cut(s) | 221 |
| NlaIII | CATG | 3 cut(s) | 176, 188, 244 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 64, 101 |
| RsaNI | GTAC | 2 cut(s) | 63, 100 |
| SaqAI | TTAA | 2 cut(s) | 36, 95 |
| Sau3AI | GATC | 1 cut(s) | 221 |
| SetI | ASST | 5 cut(s) | 12, 58, 150, 194, 206 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| SmlI | CTYRAG | 1 cut(s) | 166 |
| SmoI | CTYRAG | 1 cut(s) | 166 |
| Sse9I | AATT | 2 cut(s) | 30, 111 |
| TaqI | TCGA | 1 cut(s) | 218 |
| TasI | AATT | 2 cut(s) | 30, 111 |
| TatI | WGTACW | 1 cut(s) | 99 |
| Tru1I | TTAA | 2 cut(s) | 36, 95 |
| Tru9I | TTAA | 2 cut(s) | 36, 95 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 2 cut(s) | 65, 257 |
| XapI | RAATTY | 1 cut(s) | 30 |