FvH4_6g32371
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001157
Physical Location & Seq
Forward (+)
25422494 .. 25422994
501 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32371.t1

Sequence Viewer

Length: 501 bp
ATGGGTGACGCACCGATTACTAGAGCAGACCTAGAAGGTATCCTAGAAGGTGTTACTGCGAATTTTACCGCAGCCCTTGCTACGTTGACTAATCAAGTGAACAAATTGAAGATTGATAATAACAATAGGAAGCGTGGAGAAGGCAGAGCTATTCCTCAACATAGGGTTCCACGAGGGAGAGGAACCACAATTGCTAGCAGCTCTGAGTCTGATTCAGAAGATGAAGTTGTTGATCTGGCGCAATTAGGGCAAGATGATAAGGATTTCAGGATGAAGGTTGATATCCCTTTCTTTAATGGGATGATGAACGTGGAGGAATTTCTGGATTGGCAAATTGAAGTGGACAGATTCATAGAGCATATGAATGTCGCGGAACATAAGCAAGTGAAGTTGGTGGCAGCTCGTCTCAAGAGCACTGCGGCAGTTTGGTGGGATAAGTTGGCATTGACAAGATTGAGACAGAGAAAAAAACCCGTCAAGAATTGGCGGAGGATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

167

Amino Acids

18.97

Weight (kDa)

9.47

Isoelectric Point (pI)

25.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 371
AciI CCGC 4 cut(s) 69, 371, 419, 487
AcsI RAATTY 2 cut(s) 61, 317
AgsI TTSAA 2 cut(s) 109, 338
AluBI AGCT 3 cut(s) 149, 201, 401
AluI AGCT 3 cut(s) 149, 201, 401
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 2 cut(s) 410, 451
ApeKI GCWGC 3 cut(s) 71, 198, 398
ApoI RAATTY 2 cut(s) 61, 317
AspLEI GCGC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 17
AsuNHI GCTAGC 1 cut(s) 194
BauI CACGAG 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 83, 210, 410
BciVI GTATCC 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 410, 451
BfaI CTAG 4 cut(s) 21, 32, 44, 195
BfuI GTATCC 1 cut(s) 50
BisI GCNGC 4 cut(s) 72, 199, 399, 420
BlsI GCNGC 4 cut(s) 73, 200, 400, 421
BmiI GGNNCC 2 cut(s) 168, 184
BmtI GCTAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 392
BseGI GGATG 3 cut(s) 276, 306, 498
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 83, 210, 410
Bsh1236I CGCG 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 410, 451
BsmBI CGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 4 cut(s) 69, 371, 419, 487
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 168, 184
BspOI GCTAGC 1 cut(s) 198
BssMI GATC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 276, 306, 498
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 410, 451
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 77, 247
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 83, 210, 410
BsuI GTATCC 1 cut(s) 50
BtsCI GGATG 3 cut(s) 276, 306, 498
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 241
CseI GACGC 1 cut(s) 17
CviJI RGCY 4 cut(s) 74, 149, 201, 401
CviKI_1 RGCY 4 cut(s) 74, 149, 201, 401
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 283
EcoRV GATATC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 410
FaiI YATR 5 cut(s) 162, 353, 360, 362, 378
FauNDI CATATG 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 72, 199, 399, 420
FokI GGATG 2 cut(s) 283, 313
Fsp4HI GCNGC 4 cut(s) 72, 199, 399, 420
FspBI CTAG 4 cut(s) 21, 32, 44, 195
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 72, 199, 399, 420
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 241
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 3 cut(s) 206, 212, 348
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 87, 100, 343
Hpy188I TCNGA 3 cut(s) 205, 211, 217
Hpy188III TCNNGA 4 cut(s) 268, 323, 409, 478
Hpy8I GTNNAC 3 cut(s) 87, 100, 343
HpyAV CCTTC 4 cut(s) 29, 41, 134, 268
HpyCH4IV ACGT 2 cut(s) 83, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 247
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 2 cut(s) 83, 309
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 3 cut(s) 221, 253, 308
Lsp1109I GCAGC 3 cut(s) 83, 210, 410
MaeI CTAG 4 cut(s) 21, 32, 44, 195
MaeII ACGT 2 cut(s) 83, 309
MaeIII GTNAC 2 cut(s) 5, 52
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 121, 230
MfeI CAATTG 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 7 cut(s) 61, 104, 189, 242, 317, 333, 481
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 5 cut(s) 165, 167, 173, 307, 483
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 363
MunI CAATTG 1 cut(s) 189
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 77, 247
NdeI CATATG 1 cut(s) 360
NdeII GATC 1 cut(s) 232
NheI GCTAGC 1 cut(s) 194
NlaIV GGNNCC 2 cut(s) 168, 184
NmuCI GTSAC 1 cut(s) 5
PfeI GAWTC 2 cut(s) 212, 348
PkrI GCNGC 4 cut(s) 73, 200, 400, 421
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 168, 184
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 72, 199, 399, 420
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 416
SetI ASST 9 cut(s) 33, 40, 52, 86, 151, 203, 279, 312, 403
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 7 cut(s) 61, 104, 189, 242, 317, 333, 481
SsiI CCGC 4 cut(s) 69, 371, 419, 487
SspMI CTAG 4 cut(s) 21, 32, 44, 195
TaiI ACGT 2 cut(s) 86, 312
TasI AATT 7 cut(s) 61, 104, 189, 242, 317, 333, 481
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 2 cut(s) 212, 348
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 71, 198, 398
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 237, 287, 320, 340, 377
TspRI CASTG 1 cut(s) 421
XapI RAATTY 2 cut(s) 61, 317
XspI CTAG 4 cut(s) 21, 32, 44, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.