Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

13939446 .. 13940566

Gene Structure 1121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCCCAAGTCCATTGTGAGTGATCGTGATCCAGTGTTCCTCAGTCACTTTTGGACTGCCTTCTTCAAACTACAAGGTACGACTCTCTGCCACAGCTCCGCATACCACCCTCAATCAGATGGCCAAACGGAAGTTGTTAATCGGTCCCTGGAGCACTTCCTTCGATGTTTCGTGCTGGACAAACCATCTTCTTGGTCCGAGTTACTCCATTGTGCTGAATGGTGGTATAACACCACCTATCATTCCACCATCAAGATGACACCTTTTCAGGCAGTTTATGGCACTCCGCCCCCCTCTGTTTCGCAGTATAGCCCTGGTTCTTCCTCGGTCCACGCAGTTGACCAGGCCTTGCAGGACCGCAACACCCTTCTTCAGCTCCTACGCTCTCACATGCTTGAGGCCCAAAACCGGATGAAACAGCAAGCCGATCGGCACCGGACTGAGCGAGAGTTCAACACAGGTGATTGGGTGTTTCTCAAACTCCATCCTTATCGTCAGCAGTCCGTTGTGAAACGCCCTTCTCACAAGCTCGCTCCCCGATTTTATGGTCCTTTCCGGGTTCGCGAGCGAGTTGGCACCGTGGCATACAAGCTGGACCTACCCCCTCGGTGCCGCATTCACCCTGTTTTCCATGTTTCTTTGCTTAAACGCCGTGTGGGCGAGGGTACCCCTCTTACTACTTCACTTCCGGAATTTGATGAGAATGGCGCTCTTTTGTGGACTCCGACCAAGGTTCTTGACATGGCGATTGTCCGTAAGAAGAAGCGCAACGTGACTCAATGGTTGGTGCAGTGGTCAGGTCTTCCGATTGAAGATGCCGCCTGGGAAGATGCCCATACCATCAAACAGCGTTTTCCTACGTTCTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

290

Amino Acids

33.64

Weight (kDa)

9.55

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	154 - 217	7e-25	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	665
AccB1I	GGYRCC	4 cut(s)	432, 575, 609, 665
AccII	CGCG	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	5 cut(s)	99, 287, 358, 613, 819
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	79, 667
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	67, 454, 812
AjnI	CCWGG	4 cut(s)	147, 313, 342, 821
AluBI	AGCT	4 cut(s)	96, 376, 529, 592
AluI	AGCT	4 cut(s)	96, 376, 529, 592
Alw21I	GWGCWC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	3 cut(s)	121, 345, 399
ApoI	RAATTY	1 cut(s)	692
Asp718I	GGTACC	1 cut(s)	665
AspLEI	GCGC	2 cut(s)	710, 768
AspS9I	GGNCC	7 cut(s)	144, 195, 328, 355, 400, 548, 595
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	473, 611
AvaII	GGWCC	6 cut(s)	144, 195, 328, 355, 548, 595
BalI	TGGCCA	1 cut(s)	123
BanI	GGYRCC	4 cut(s)	432, 575, 609, 665
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	5 cut(s)	113, 193, 257, 492, 848
BceAI	ACGGC	1 cut(s)	636
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 410, 444
BciT130I	CCWGG	4 cut(s)	149, 315, 344, 823
BcnI	CCSGG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	711
BglI	GCCNNNNNGGC	1 cut(s)	657
BisI	GCNGC	2 cut(s)	613, 819
BlsI	GCNGC	2 cut(s)	614, 820
Bme1390I	CCNGG	5 cut(s)	149, 315, 344, 557, 823
Bme18I	GGWCC	6 cut(s)	144, 195, 328, 355, 548, 595
BmgT120I	GGNCC	7 cut(s)	144, 195, 328, 355, 400, 548, 595
BmiI	GGNNCC	5 cut(s)	146, 434, 577, 611, 667
BmrFI	CCNGG	5 cut(s)	149, 315, 344, 557, 823
BmsI	GCATC	2 cut(s)	805, 820
BpiI	GAAGAC	1 cut(s)	794
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	557
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	7 cut(s)	147, 313, 324, 579, 605, 729, 822
BsaWI	WCCGGW	3 cut(s)	408, 435, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	4 cut(s)	149, 315, 344, 823
BseDI	CCNNGG	7 cut(s)	147, 313, 324, 579, 605, 729, 822
BseGI	GGATG	2 cut(s)	417, 484
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	55, 432
BseNI	ACTGG	1 cut(s)	32
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	564
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	3 cut(s)	123, 347, 401
BshNI	GGYRCC	4 cut(s)	432, 575, 609, 665
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	4 cut(s)	409, 436, 556, 689
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	123, 347, 401
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	3 cut(s)	22, 28, 427
Bsp68I	TCGCGA	1 cut(s)	564
BspACI	CCGC	5 cut(s)	99, 287, 358, 613, 819
BspANI	GGCC	3 cut(s)	123, 347, 401
BspCNI	CTCAG	2 cut(s)	54, 433
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	5 cut(s)	146, 434, 577, 611, 667
BspPI	GGATC	1 cut(s)	23
BspT107I	GGYRCC	4 cut(s)	432, 575, 609, 665
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	7 cut(s)	147, 313, 324, 579, 605, 729, 822
BssMI	GATC	3 cut(s)	22, 28, 427
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	4 cut(s)	149, 315, 344, 823
Bst4CI	ACNGT	1 cut(s)	580
BstC8I	GCNNGC	3 cut(s)	423, 531, 566
BstDEI	CTNAG	2 cut(s)	41, 441
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	2 cut(s)	417, 484
BstFNI	CGCG	1 cut(s)	564
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	2 cut(s)	710, 768
BstKTI	GATC	3 cut(s)	25, 31, 430
BstMBI	GATC	3 cut(s)	22, 28, 427
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	4 cut(s)	149, 315, 344, 823
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	5 cut(s)	147, 313, 342, 555, 821
BstUI	CGCG	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	794
BstXI	CCANNNNNNTGG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	123, 347, 401
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	417, 484
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	2 cut(s)	39, 797
BtuMI	TCGCGA	1 cut(s)	564
Cac8I	GCNNGC	3 cut(s)	423, 531, 566
CfoI	GCGC	2 cut(s)	710, 768
Cfr13I	GGNCC	7 cut(s)	144, 195, 328, 355, 400, 548, 595
Csp6I	GTAC	2 cut(s)	78, 666
CviAII	CATG	3 cut(s)	391, 632, 742
CviJI	RGCY	9 cut(s)	96, 123, 312, 347, 376, 401, 425, 529, 592
CviKI_1	RGCY	9 cut(s)	96, 123, 312, 347, 376, 401, 425, 529, 592
CviQI	GTAC	2 cut(s)	78, 666
DdeI	CTNAG	2 cut(s)	41, 441
DpnI	GATC	3 cut(s)	24, 30, 429
DpnII	GATC	3 cut(s)	22, 28, 427
EaeI	YGGCCR	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	729
Eco147I	AGGCCT	1 cut(s)	347
Eco47I	GGWCC	6 cut(s)	144, 195, 328, 355, 548, 595
Eco57I	CTGAAG	1 cut(s)	356
EcoRII	CCWGG	4 cut(s)	147, 313, 342, 821
EcoT14I	CCWWGG	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	3 cut(s)	394, 635, 745
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	390, 631, 741
Fnu4HI	GCNGC	2 cut(s)	613, 819
FokI	GGATG	2 cut(s)	424, 471
Fsp4HI	GCNGC	2 cut(s)	613, 819
GlaI	GCGC	2 cut(s)	709, 767
GluI	GCNGC	2 cut(s)	613, 819
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	3 cut(s)	123, 347, 401
HapII	CCGG	4 cut(s)	409, 436, 556, 689
HhaI	GCGC	2 cut(s)	710, 768
Hin1II	CATG	3 cut(s)	394, 635, 745
Hin6I	GCGC	2 cut(s)	708, 766
HinP1I	GCGC	2 cut(s)	708, 766
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	3 cut(s)	82, 721, 775
HpaII	CCGG	4 cut(s)	409, 436, 556, 689
HphI	GGTGA	2 cut(s)	473, 611
Hpy166II	GTNNAC	3 cut(s)	331, 340, 720
Hpy188I	TCNGA	4 cut(s)	118, 199, 726, 807
Hpy188III	TCNNGA	5 cut(s)	26, 253, 563, 689, 737
Hpy8I	GTNNAC	3 cut(s)	331, 340, 720
HpyAV	CCTTC	4 cut(s)	70, 170, 377, 528
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	2 cut(s)	771, 860
HpyCH4V	TGCA	2 cut(s)	352, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	2 cut(s)	41, 441
HpySE526I	ACGT	2 cut(s)	771, 860
Hsp92II	CATG	3 cut(s)	394, 635, 745
HspAI	GCGC	2 cut(s)	708, 766
Kpn2I	TCCGGA	1 cut(s)	688
KpnI	GGTACC	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	22, 28, 427
LmnI	GCTCC	4 cut(s)	101, 151, 381, 538
LweI	GCATC	2 cut(s)	805, 820
MaeII	ACGT	2 cut(s)	771, 860
MaeIII	GTNAC	3 cut(s)	44, 201, 772
MalI	GATC	3 cut(s)	24, 30, 429
MboI	GATC	3 cut(s)	22, 28, 427
MboII	GAAGA	8 cut(s)	55, 180, 312, 362, 772, 794, 824, 839
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	1 cut(s)	692
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	3 cut(s)	76, 715, 769
MmeI	TCCRAC	1 cut(s)	749
MnlI	CCTC	8 cut(s)	50, 120, 304, 334, 391, 615, 655, 681
Mox20I	TGGCCA	1 cut(s)	123
MroI	TCCGGA	1 cut(s)	688
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	2 cut(s)	138, 645
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	4 cut(s)	409, 436, 556, 689
MspR9I	CCNGG	5 cut(s)	149, 315, 344, 557, 823
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	4 cut(s)	149, 315, 344, 823
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	657
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	3 cut(s)	22, 28, 427
NlaIII	CATG	3 cut(s)	394, 635, 745
NlaIV	GGNNCC	5 cut(s)	146, 434, 577, 611, 667
NmuCI	GTSAC	2 cut(s)	44, 772
NruI	TCGCGA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	347
PctI	GAATGC	1 cut(s)	615
PkrI	GCNGC	2 cut(s)	614, 820
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	3 cut(s)	76, 715, 769
PpsI	GAGTC	3 cut(s)	76, 715, 769
Psp6I	CCWGG	4 cut(s)	147, 313, 342, 821
PspGI	CCWGG	4 cut(s)	147, 313, 342, 821
PspN4I	GGNNCC	5 cut(s)	146, 434, 577, 611, 667
PspPI	GGNCC	7 cut(s)	144, 195, 328, 355, 400, 548, 595
PvuI	CGATCG	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	564
RsaI	GTAC	2 cut(s)	79, 667
RsaNI	GTAC	2 cut(s)	78, 666
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	138, 645
SatI	GCNGC	2 cut(s)	613, 819
Sau3AI	GATC	3 cut(s)	22, 28, 427
Sau96I	GGNCC	7 cut(s)	144, 195, 328, 355, 400, 548, 595
SchI	GAGTC	3 cut(s)	76, 715, 769
ScrFI	CCNGG	5 cut(s)	149, 315, 344, 557, 823
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	805, 820
SinI	GGWCC	6 cut(s)	144, 195, 328, 355, 548, 595
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	692
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	5 cut(s)	99, 287, 358, 613, 819
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	5 cut(s)	147, 313, 342, 555, 821
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	2 cut(s)	774, 863
TaqI	TCGA	1 cut(s)	163
TaqII	GACCGA	2 cut(s)	132, 316
TasI	AATT	1 cut(s)	692
TauI	GCSGC	2 cut(s)	615, 821
Tru1I	TTAA	2 cut(s)	138, 645
Tru9I	TTAA	2 cut(s)	138, 645
TscAI	CASTG	2 cut(s)	39, 797
TseFI	GTSAC	2 cut(s)	44, 772
Tsp45I	GTSAC	2 cut(s)	44, 772
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	3 cut(s)	143, 493, 743
TspRI	CASTG	2 cut(s)	39, 797
VpaK11BI	GGWCC	6 cut(s)	144, 195, 328, 355, 548, 595
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.