Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

14605425 .. 14606661

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTATTTCACGTTTCGATGCTTCGTCACTGTCTCAGATCCATCACATGTGCTACCTCCACAGCCGTTGAAAATTAATCCTGATCAGACTTACGACGAGGAGCCAGTGACTATTCTATACTGGAAAGAAAAGGTTCTGAGGAACAAGATTGTGCGTTTAATGAAAGTTTGTGAAGAATCATTCAGTGGAAGAGGCTACTTGGGAGACGGAGGACCATATGAGAGATTTATATCCACTTTTGTTTTATGTTTACTAGTGTTAACGGCGTCAGGTGAGACCTATCTTGAGGACGAGCGCAGTCACTCAAGACTAGGGGGCTACAACCCTTCCATATACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

5.64

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AclWI	GGATC	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	70
AhlI	ACTAGT	1 cut(s)	253
Alw26I	GTCTC	3 cut(s)	37, 198, 269
AlwI	GGATC	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	212
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	2 cut(s)	49, 279
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	3 cut(s)	37, 198, 269
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	2 cut(s)	254, 311
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	289, 305
BsaBI	GATNNNNATC	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	3 cut(s)	104, 125, 341
Bse8I	GATNNNNATC	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	48, 128
BseNI	ACTGG	3 cut(s)	104, 125, 341
BseRI	GAGGAG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	3 cut(s)	37, 198, 269
BsmBI	CGTCTC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	37, 82
BspCNI	CTCAG	2 cut(s)	47, 129
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	104, 125, 341
BssMI	GATC	2 cut(s)	37, 82
BssNI	GRCGYC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	34, 137
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	40, 85
BstMAI	GTCTC	3 cut(s)	37, 198, 269
BstMBI	GATC	2 cut(s)	37, 82
BstNSI	RCATGY	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BtsIMutI	CAGTG	3 cut(s)	27, 111, 190
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	255
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	4 cut(s)	64, 103, 195, 318
CviKI_1	RGCY	4 cut(s)	64, 103, 195, 318
DdeI	CTNAG	2 cut(s)	34, 137
DpnI	GATC	2 cut(s)	39, 84
DpnII	GATC	2 cut(s)	37, 82
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	50
FaiI	YATR	8 cut(s)	48, 118, 217, 219, 230, 247, 332, 334
FatI	CATG	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	82
FspBI	CTAG	2 cut(s)	254, 311
GlaI	GCGC	1 cut(s)	296
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	176
HpaI	GTTAAC	1 cut(s)	261
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	251, 261
Hpy188I	TCNGA	3 cut(s)	37, 87, 138
Hpy188III	TCNNGA	3 cut(s)	80, 284, 306
Hpy8I	GTNNAC	2 cut(s)	251, 261
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	34, 137
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	82
KspAI	GTTAAC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	37, 82
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	93, 106, 117, 255, 322
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	2 cut(s)	254, 311
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	25, 106, 299
MalI	GATC	2 cut(s)	39, 84
MboI	GATC	2 cut(s)	37, 82
MboII	GAAGA	2 cut(s)	185, 201
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	6 cut(s)	66, 91, 132, 185, 203, 280
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	3 cut(s)	75, 158, 260
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	2 cut(s)	37, 82
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	25, 106, 299
NspI	RCATGY	1 cut(s)	50
PciI	ACATGT	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	336
PscI	ACATGT	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	75, 158, 260
Sau3AI	GATC	2 cut(s)	37, 82
Sau96I	GGNCC	1 cut(s)	212
SetI	ASST	5 cut(s)	14, 58, 135, 274, 281
SfaNI	GCATC	1 cut(s)	8
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	284, 304
SmoI	CTYRAG	2 cut(s)	284, 304
SpeI	ACTAGT	1 cut(s)	253
Sse9I	AATT	1 cut(s)	72
SspMI	CTAG	2 cut(s)	254, 311
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	75, 158, 260
Tru9I	TTAA	3 cut(s)	75, 158, 260
TscAI	CASTG	3 cut(s)	34, 111, 190
TseFI	GTSAC	3 cut(s)	25, 106, 299
Tsp45I	GTSAC	3 cut(s)	25, 106, 299
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	3 cut(s)	34, 111, 190
Van91I	CCANNNNNTGG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	75
XceI	RCATGY	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	254, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.