Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Reverse (-)

349144 .. 349951

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGACCATTTGAGAGTTTTGATACTAGGTGTTGGGAGTCAGGATTGAGAATTGACATTCTTGAATTCTACGGAAGCATTCAACCTGAAGAGGCTCAATTATGTGGAGAAGCTCGAAGAGATATTGTTGAAACAGAGGAGCAGATGGTGTCACGGTATATTGTGGGCCTCCGCATTCCATTTCAAGATACTTTGAATTTATTTGATCTTTTTTCTGTGGTTAAAGCGCATCAGAGAGCCTTGCAGATAGAAAAACAGATGAGTCGAAAGGAAAATACTGGCGGCACGTGGGCTGCAAGCAGTTCTAATAATCAGGGTGGTGTGAGCAATTCAGCCCCTAGTCGTTTGCAAGCTCCCCAAGTTCACAACACGAGGACAAACTCAAATATAACTCCAGGGAAAGCACAGACTGTGGGTCCTGAACGAGGTGGTAGTCGTTGTTTTAATTGTGGGGAATATGGACATCGAATGGCTGTTTGCACAAAGGGAGGAAAAACTAGCAAAAGATTGTTTACAGAGGGTGAAAGTGCTCAATTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag zf-CCHC

Protein Analysis

181

Amino Acids

20.04

Weight (kDa)

8.32

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	172, 282
AcsI	RAATTY	2 cut(s)	65, 196
AcuI	CTGAAG	1 cut(s)	108
AcvI	CACGTG	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	5 cut(s)	65, 83, 131, 185, 196
AhdI	GACNNNNNGTC	1 cut(s)	414
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	2 cut(s)	113, 353
AluI	AGCT	2 cut(s)	113, 353
Alw21I	GWGCWC	1 cut(s)	532
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	65, 196
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	166, 416
AsuHPI	GGTGA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	416
BauI	CACGAG	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	396
BfaI	CTAG	3 cut(s)	27, 339, 498
BisI	GCNGC	2 cut(s)	283, 294
BlsI	GCNGC	2 cut(s)	284, 295
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	416
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	166, 416
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmI	GAATGC	2 cut(s)	78, 174
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	172, 282
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	156, 412
Bst6I	CTCTTC	2 cut(s)	84, 112
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	298, 351
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	298, 351
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	166, 416
CviJI	RGCY	8 cut(s)	95, 113, 168, 239, 293, 335, 353, 473
CviKI_1	RGCY	8 cut(s)	95, 113, 168, 239, 293, 335, 353, 473
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DriI	GACNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	84, 112
Eam1105I	GACNNNNNGTC	1 cut(s)	414
EarI	CTCTTC	2 cut(s)	84, 112
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	108
Eco72I	CACGTG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	394
FaiI	YATR	5 cut(s)	103, 159, 389, 459, 541
Fnu4HI	GCNGC	2 cut(s)	283, 294
Fsp4HI	GCNGC	2 cut(s)	283, 294
FspBI	CTAG	3 cut(s)	27, 339, 498
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	283, 294
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	38, 262
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	364, 513
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	4 cut(s)	42, 62, 185, 419
Hpy8I	GTNNAC	2 cut(s)	364, 513
HpyCH4III	ACNGT	2 cut(s)	156, 412
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	244, 296, 349, 480
HpySE526I	ACGT	1 cut(s)	287
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	139, 358
LpnPI	CCDG	7 cut(s)	27, 99, 264, 299, 381, 408, 432
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	27, 339, 498
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	101, 129
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	7 cut(s)	51, 65, 98, 196, 328, 445, 533
MlyI	GAGTC	2 cut(s)	47, 271
MnlI	CCTC	7 cut(s)	85, 130, 179, 366, 419, 482, 511
MseI	TTAA	2 cut(s)	222, 444
MspR9I	CCNGG	1 cut(s)	396
Mva1269I	GAATGC	2 cut(s)	78, 174
MvaI	CCWGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	150
PctI	GAATGC	2 cut(s)	78, 174
PkrI	GCNGC	2 cut(s)	284, 295
PleI	GAGTC	2 cut(s)	46, 270
PmaCI	CACGTG	1 cut(s)	288
PmlI	CACGTG	1 cut(s)	288
PpsI	GAGTC	2 cut(s)	46, 270
Ppu21I	YACGTR	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	394
PspCI	CACGTG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	166, 416
PspPPI	RGGWCCY	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	222, 444
SatI	GCNGC	2 cut(s)	283, 294
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	166, 416
SchI	GAGTC	2 cut(s)	47, 271
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	6 cut(s)	32, 88, 115, 290, 355, 430
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	7 cut(s)	51, 65, 98, 196, 328, 445, 533
SsiI	CCGC	2 cut(s)	172, 282
SspMI	CTAG	3 cut(s)	27, 339, 498
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	156, 412
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	3 cut(s)	115, 265, 466
TasI	AATT	7 cut(s)	51, 65, 98, 196, 328, 445, 533
TauI	GCSGC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	222, 444
Tru9I	TTAA	2 cut(s)	222, 444
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	2 cut(s)	65, 196
XspI	CTAG	3 cut(s)	27, 339, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.