Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001157

Physical Location & Seq

Genomic Coordinates Forward (+)

53369001 .. 53369691

Gene Structure 691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACTCCTTTTCAGGCTGTGTATGGCACTCCCCCTCCCTCTGTACCCATGTACTTACCCGGTTCTACCACTGTCCATGCAGTAGATTGTGCTCTCAAGGATCGTGATGCTCTGCTCCAATTGCTCAAATTACATATGTCCCAAGCACAAAACAGGATGAAGCAACAATCGGATCGCTCTCGCACTGAACGCGAGTTCAAGGTAGGTGATTGGGTCTTTTTGAAACTGCACCCATATCGACAGCGTTCCCTGGTCAAGCATCCCTCACACAAGCTTTCCCCACGCTACTATGGACCCTTTGAAATTCAAGCTCGGATTGGTCAGGTTGCTTATCGTCTGCTTCTTCCAACTTCATGCCGGCTTCATCCAGTTTTTCATGTTTCCCTCCTTAAGAAGAGGATTGGTGAAGGCACCCCACTCACAACCATGCTGCCAGAATTTGATGATAAAGGTGAGCATCTTTGGCGTCCTGAGAAAGTGCTGGATATGGCAGTTGTCAAGAAAAAGAAACGCTCTATCACACAGTGGCTCATCCAATGGCACGGCCTCCCTGCTGCTGATGCTACTTGGGAGGATGCACACACCATTAGAGCTAGATTCCCCGCGTTCTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo

Protein Analysis

205

Amino Acids

23.67

Weight (kDa)

9.89

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_Tf2-1	PF24626	69 - 132	1.2e-24	Tf2-1-like, SH3 domain
Chromo	PF00385	156 - 201	2.2e-07	Chromo (CHRromatin Organisation MOdifier) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00850
fragaria_vesca	FvH4_1g23441 FvH4_2g05351 FvH4_3g42702 FvH4_4g00102 FvH4_4g14286 FvH4_4g15489 FvH4_6g15081 FvH4_6g32371 FvH4_7g29723 FvH4_7g29724
malus_domestica	MD03G1059800.v1.1
pyrus_communis	pycom02g17090 pycom04g00340
rosa_chinensis	RchiOBHm_Chr1g0313301 RchiOBHm_Chr1g0339801 RchiOBHm_Chr1g0384471 RchiOBHm_Chr2g0098581 RchiOBHm_Chr2g0099161 RchiOBHm_Chr2g0174581 RchiOBHm_Chr3g0488331 RchiOBHm_Chr5g0056121 RchiOBHm_Chr5g0056131 RchiOBHm_Chr5g0082941 RchiOBHm_Chr6g0250891 RchiOBHm_Chr6g0258591 RchiOBHm_Chr6g0290351
rosa_laevigata	RLG00000002118 RLG00000010853 RLG00000024377 RLG00000030355
rosa_roxburghii	Rroxscaffold_155G00443850 Rroxscaffold_159G00432700 Rroxscaffold_1G00045030 Rroxscaffold_1G00066280 Rroxscaffold_3G00276420 Rroxscaffold_5G00359430 Rroxscaffold_5G00378120
rosa_rugosa	Rorug06G0154800
rosa_samantha	Rh1AG114400 Rh3BG237700 Rh3CG227400
rosa_wichuraiana	Rw0G004600 Rw0G007090 Rw1G026280 Rw1G036440 Rw2G004680 Rw2G015650 Rw3G000560 Rw3G014520 Rw3G020520 Rw4G027690 Rw5G014430 Rw5G014610 Rw6G001250 Rw7G007160 Rw7G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccII	CGCG	2 cut(s)	192, 605
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	108, 180
AcsI	RAATTY	2 cut(s)	303, 437
AcyI	GRCGYC	1 cut(s)	466
AdeI	CACNNNGTG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	45, 53
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	199, 223, 302, 308
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	274, 311, 593
AluI	AGCT	3 cut(s)	274, 311, 593
Alw21I	GWGCWC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	108, 180
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	430, 554
ApoI	RAATTY	2 cut(s)	303, 437
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	218, 416, 464
AvaII	GGWCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	417, 541
BceAI	ACGGC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	2 cut(s)	431, 555
BlsI	GCNGC	2 cut(s)	432, 556
Bme1390I	CCNGG	2 cut(s)	60, 251
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	295, 412
BmrFI	CCNGG	2 cut(s)	60, 251
BmsI	GCATC	5 cut(s)	97, 268, 466, 550, 565
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	5 cut(s)	162, 259, 364, 531, 580
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	417, 541
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	192, 605
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	60, 358
BslFI	GGGAC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	2 cut(s)	100, 172
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	192, 605
BspLI	GGNNCC	2 cut(s)	295, 412
BspPI	GGATC	2 cut(s)	108, 180
BspT107I	GGYRCC	1 cut(s)	410
BspTI	CTTAAG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	100, 172
BssNI	GRCGYC	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	73, 525
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	466
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	5 cut(s)	162, 259, 364, 531, 580
BstFNI	CGCG	2 cut(s)	192, 605
BstKTI	GATC	2 cut(s)	103, 175
BstMBI	GATC	2 cut(s)	100, 172
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 189, 463, 560, 611
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	58, 249
BstUI	CGCG	2 cut(s)	192, 605
BstV1I	GCAGC	2 cut(s)	417, 541
BsuRI	GGCC	1 cut(s)	546
BtsCI	GGATG	5 cut(s)	162, 259, 364, 531, 580
BtsIMutI	CAGTG	3 cut(s)	69, 183, 530
Cac8I	GCNNGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	44, 52
CviAII	CATG	5 cut(s)	49, 77, 354, 377, 427
CviJI	RGCY	7 cut(s)	17, 274, 311, 361, 529, 546, 593
CviKI_1	RGCY	7 cut(s)	17, 274, 311, 361, 529, 546, 593
CviQI	GTAC	2 cut(s)	44, 52
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	2 cut(s)	102, 174
DpnII	GATC	2 cut(s)	100, 172
DraIII	CACNNNGTG	1 cut(s)	525
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	52, 80, 357, 380, 430
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	5 cut(s)	48, 76, 353, 376, 426
FauI	CCCGC	1 cut(s)	610
FauNDI	CATATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	431, 555
FokI	GGATG	5 cut(s)	169, 246, 351, 518, 587
Fsp4HI	GCNGC	2 cut(s)	431, 555
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	2 cut(s)	431, 555
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	2 cut(s)	60, 358
HgaI	GACGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	5 cut(s)	52, 80, 357, 380, 430
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	4, 597
HpaII	CCGG	2 cut(s)	60, 358
HphI	GGTGA	3 cut(s)	218, 416, 464
Hpy188I	TCNGA	2 cut(s)	172, 315
Hpy188III	TCNNGA	3 cut(s)	104, 470, 499
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	73, 525
HpyCH4V	TGCA	3 cut(s)	80, 229, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 189, 463, 560, 611
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	5 cut(s)	52, 80, 357, 380, 430
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	100, 172
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	417, 541
LweI	GCATC	5 cut(s)	97, 268, 466, 550, 565
MaeI	CTAG	1 cut(s)	594
MalI	GATC	2 cut(s)	102, 174
MboI	GATC	2 cut(s)	100, 172
MboII	GAAGA	2 cut(s)	335, 406
MfeI	CAATTG	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	4 cut(s)	119, 128, 303, 437
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	7 cut(s)	45, 49, 274, 390, 395, 557, 565
MroNI	GCCGGC	1 cut(s)	357
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	2 cut(s)	60, 358
MspR9I	CCNGG	2 cut(s)	60, 251
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	2 cut(s)	192, 605
MwoI	GCNNNNNNNGC	5 cut(s)	121, 189, 463, 560, 611
NaeI	GCCGGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	2 cut(s)	100, 172
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	5 cut(s)	52, 80, 357, 380, 430
NlaIV	GGNNCC	2 cut(s)	295, 412
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	597
PkrI	GCNGC	2 cut(s)	432, 556
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	295, 412
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	45, 53
RsaNI	GTAC	2 cut(s)	44, 52
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	431, 555
Sau3AI	GATC	2 cut(s)	100, 172
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	60, 251
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	7 cut(s)	204, 208, 276, 313, 327, 454, 595
SfaNI	GCATC	5 cut(s)	97, 268, 466, 550, 565
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	95, 389
SmoI	CTYRAG	2 cut(s)	95, 389
Sse9I	AATT	4 cut(s)	119, 128, 303, 437
SsiI	CCGC	1 cut(s)	603
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	58, 249
TaaI	ACNGT	2 cut(s)	73, 525
TaqI	TCGA	1 cut(s)	238
TasI	AATT	4 cut(s)	119, 128, 303, 437
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	597
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	3 cut(s)	76, 190, 530
TseI	GCWGC	2 cut(s)	430, 554
TspDTI	ATGAA	4 cut(s)	173, 342, 353, 365
TspRI	CASTG	3 cut(s)	76, 190, 530
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	2 cut(s)	303, 437
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.