RchiOBHm_Chr6g0250891

L-threonine ammonia-lyase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
6194839 .. 6202624
7786 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22490

Sequence Viewer

Length: 4884 bp
ATGACCCTCCGTGGCCTGCAAAACCCCACCCCATCCATCCCCTTCTCCTCCGCCCTAGTCGACCCACCACCCTCTTCTCCAACTCCGCTCCACCAGCCCTCCTCTTCCACCTCCGTATCTGATACCCAGGCACTGAATCTCCAAAACACCATTGAATTCCTCCAAAACCAGAATGAAGACCTGCACACATCCTTCGAATCCTTTCAAAATCGTATGTCAGCTCAATTCGCAGCCCTCCAAAACACCGTGGTGGCATCGTTGGTTCACCGTCCACAACCCCCTGTGAGCAATACCTGTAGCACCCCTGCATCTGGCTCCCCACAAATCATATTTGGCTCCCTTAACTCCGCCTCTCCCATCATTACACCGCCGTGCTCCACCACAGGTACAACCAGCTCCATCTCTCCATCCTCTAGCACAATCCCACCAGAGTCCCAACCAAACCCACCCCCACAGTCTACTCCACCACCACAATACTCCTGGCCTTACCCACCACACTATTACTCCCACCCACCCATCAGCCCTCTTGCTCCTCCTCCAGGTTTCCACTCCATCCCTGGTCCTTCGAGCTCAGCCGTTTACTCAACCATAACCTCCTCGATCAGTGACCCGATTCACTCAGCCCCACACCCACATCTCTTTCCACCACAACCCGTTCCTCCTTACAAACTCCTTCAGACCCCATACCCACACCAAGACCACACCTTTCGACCTCCAAAGATAGACTTACCACGTTTCACCGGCGACGACGCCGTTGGTTGGGTGGCTATGGCGGAACGCTATCTGCGGGTTCACCGGATTCCTTTACACGAACAGGTGGCCATGGTCTCTTCCCACTTCGGGCCCGATGCCTCAGTGTGGATGAACGCCTTTGAACAACGCCACCCATTCTCCACTTGGGATCTGTTTATCACGGCCTTCCTCGAACATTTTGGGGCCGGCAGCAATACTGATTTCAAGTCTCAGCTTTCCCACCTGCAACAATGGAATTCGGTGGATGAGTTTATCACTGAATTTACAAAGCTCTCGTGTCGTGCTCCGGAGTGGTCCGACGAGCAACTCTTACCTATTTTCCTCGGCGGTTTGAAGCCCGAGATCCGGCACGATGTGATGGCCATGGAGCCACGCTCTTTATCCCATGCTCACCGCCTTGCACGGCGTTACGAGGCTAAGGTCAAGGACCTCCACGCTGCCACAAGCCACACTTTTCGCTCCCAACCTTGGTCATACGGTAGACCAGTCGGTGGTCCACACCACTCCCCATTTCCAGCCATGAGCCATGGCCCCACCCCAACAACCCAGCCCCCAAATTCAAATCTTGTCACCACTGGTCGCCCTGCAGGTCCTTACAGACGTTATTCCACAGCAGAGCAACGTGACAGAAGGGAAAAAGGCCTCTGTTACACATGTGATGAACCTTATTCCAAATACCATGTCTGCAAAAGACCTTTTCTCGCTATAATGGAGGCACCGACCGCTACTACCACAGAGGAACTATCAGAATTTCATGATGCCGCCGCCTCCTTGGAGGACCCACCAGTTGCCTCTGCGGAAATCCTTCCTTTACATGCCATCACTGAATCGGCAGCTGGGGACGTGATGCGCATCGATGGGTCCATATTAAACACTCCCATCCGGGTCTTCATCGACTGTGGCTCAGCTTCTAATTTTCTCAATCCCGTGGTTGCTCAACGCCTCGGCCTCCAGATCCATCATGATTCGCAGCTCACTTTCACCTCTGCTTCTGGGCATCCCCTGCAACCAATGGGCACTGTGCGTAACGTCACCGTTAAGGTCCAGTCCTTCACTTTCACAGATGATTTCTTTCTTCTTCCAGTAACAGGGTGTGACTTAGTCCTGGGTGCTAAGTGGCTGAACACACTGGGTTTTATTGGATGGCATTTTGCTGAAAAAGTAATGGTTTTCTTCATGGACGGTCAGTGCTACACACTCCATGGCCTTTCAGCTACTAACCGGACTCCGGATACCTCCGGCTTGCTCGCGTTGGTTCAGGCCGAGCAATCATCTTCCCTACTCCAAACCGGTATCGACCCTGTCCACACCCTTCCTCAATGTGTACAGGACCTTCTCTCCTTGTTTGATGACCTCTTTCAACCCCCAACGCGGTTGCCCCCAAAACGAGCCATTGACCACAGAATAACCCTCTTGCCCAATTCTGGCCCAGTCAATGTCAGACCTTACCGCTATGCCCATTCCCAAAAGGACGAGCTAGAAGCCCAAGTTCAAGAAATGTTACAGGCAGGCTTGATAAGACCCAGTTCCAGTCCCTATTCTTCTCCGGTCCTGCTTGTCAAAAAGAAAGAAGGGACATGGAGGTTTTGTGTGGATTACAGGGGACTTAATGCCGTAACGGTCAAAGATCGATTTCCAATTCCGGTAGTCGATGAATTATTGGATGAACTCCATGGGGCTACATACTTTACCAAATTGGACCTTCGTTCCGGATATCATCAAATCAGAATGCATGAAGACGACATTGAAAAAACGGCATTTCGGACACATGATGGCCACTTTGAATTCGTTGTTATGCCTTTTGGCCTAACGAACGCCCCTTCAACGTTTCAAGCCTTGATGAATCACATCTTCAAGCCACTACTTCGTAAGTTTGTGTTGGTTTTCTTTGATGACATCTTAATTTTTAGCTCCGATTTACTTACTCATCTTTCTCACATTACACATGTATTTGAGTTATTGCGAGCTAACAATTTAAAGCTCAAGCTGTCCAAATGTGCACTTGCTAAGACCCAAGTTGAATACTTGGGCCATGTGGTCAGTGCCAAAGGAGTTGAGATGGATCCTTCCAAGATCAAATGCATTACTGATTGGCCCAAACCCAAGTCAGTTAAGAGTCTTCGAGGGTTTCTCGGTTTGGCCGGATATTATAGGCGTTTTGTGCCGTACTTCGGTGTGATTGCACAACCATTGACTGCAATGCTCAAAACTGATAATTTTCAGTGGAACCCAGCCTCAGAGCAAGCATTTGAACGCCTAAAACAGGCCATAATCTCCGCTCCGGTCTTGGCCCTTCCGGATTTCACAAAGCCATTTGTGGTTGAAACTGATGCTAGCGGATCTGGAATCGGTGCAGTGTTGACTCAAGAGAAACACCCAGTAGCCTTCCTCAGTAAGTCCCTCTCTCCAAACCATCAAGCTATGTCCACTTATGATCGTGAGATGTTCGCGGTGATGTATGCCATTGACAAGTGGAGACCTTATCTTCTGGGCAATTCTTTCAAAATCCTTACTGACCATCAAACTTTGAAGCATTTGATGGATCAACGAATCTCCACTCCTGCGCAACACAAGTGGATAGCAAAACTCCTAGGCTATAATTATACAATTGAGTACAAGGCAGGGAATACCAACACTGTACCTGACATACTATCCAGGCGGCATGAGCTTTGTGCCATTCAAACGGTGTCCTCCCCAGTCTTTGACAGCATCTACCTTATTGATCGAGCTTGTCAACATGATCCTTCCGCACAGGCAATCATCCAAGCACTCAAGGATGGCATCCCTACCAACAAGAATTTCAAACTCCACCAGGGCAGACTATTCTACAAGGATCGTATTTTTGTGCCTGAGACATCAGAATGGCGTTCTAAACTCCTCCTTGAGTTTCATGCCTCACTTCAAGCAGGACATTCTGGCTATCTTCGAACACTCACACGTCTCTCTCGAAACTTTGCTTGGCCGGGAATGAGGAAAGATGTGAAATTGTATGTTGCTTCTTGTGACCAATGCCAGCGCCAAAAATATGAATCAATCCATCCACCTGGCCTGTTGCAGCCACTGCCAATTCCAGATCACACTTGGGAAGACATTTCCATGGACTTCGTCGAAGGGTTGCCAGATTCTCAAGGTTACAATGCCATCATGGTTGTAGTTGATCGCCTATCCAAATATGCACACTTTGTGCCTGTGTCTCACCCCTTTACAGCCTCTCAAATAGCTGATACCTTCATGAAGCACATCTTCAAACTCCATGGAATGCCAAAACGGATTGTCAGTGACCGTGACCCTGTTTTCTTGAGCCATTTTTGGACTGTTTTTTTCAAACTACAGGGCACACAACTCTGCCATAGCTCTGCATATCACCCTCAATCTGATGGGCAATCTGAAGTGGTTAATCGCTCTTTGGAACACTTTCTTCGCTGCTTCGTGCTGGACAAACCATCTACATGGAAAGAACTACTACACTGGGCCGAGTGGTGGAATAACACCACTTTCCACTCCACAATTCGAATGTCCCCCTTTGAAGCTCTCTATGGGCATCCTCCACCCTCAATTGAGAAATACCTTCCTGGTTCAACAAAGGTGAATGCTGTGGATTCCGCATTACAGACCCGAGACCTTCTCCTCCAAAACCTCAAGTCACACATGGCTGAAGCCCAAAACAGAATGAAGCAAATTTATGATAAGGGCCACACCGAGAGAGAATTTACGGAGGGAGATTGGGTCTTCTTGAAACTTCACCCTTACCGCCAGCGGTCATTACTCAAAAGATCATCCCACAAGCTGGCACCACGCTATTATGGCCCATTCCAAGTGGTGAAGAAGATTGGGACAGTGGCTTACCATCTTAAACTTCCACCATCTTCCAGACTACACCCGGTGTTCCATGTTTCATTGCTAAAGAGACGCATTGGAGATGACATCCCAGTGTCACCAACCCTGCCTCAATTTGACAACTCTGGAGAATTTCAATGGCAGCCCCTCAAGGTACTAGACATGGGTACCAGGAGTCTGAACAAGAAGCGAATTACCACCTGGCTCATACAGTGGAAAGGCCTACCTGTGGAGGATGCAACCTGGGAAGATGCTCATGACATAGCTGCCCGATTTCCAGTTTTTTGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1627

Amino Acids

183.3

Weight (kDa)

8.35

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 269 - 391 4.7e-14 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 275 - 364 3.9e-13 Retrotransposon gag protein
gag-asp_proteas PF13975 536 - 626 8.6e-07 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 537 - 608 5.1e-06 Aspartyl protease
RVT_1 PF00078 771 - 930 2.8e-39 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 993 - 1087 3.3e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 1018 - 1117 2.9e-31 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1205 - 1260 1.2e-18 Integrase zinc binding domain
rve PF00665 1282 - 1374 2.6e-08 Integrase core domain
SH3_Tf2-1 PF24626 1491 - 1554 1.3e-23 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 984
Acc16I TGCGCA 2 cut(s) 1604, 3318
Acc36I ACCTGC 3 cut(s) 189, 984, 1331
Acc65I GGTACC 1 cut(s) 4757
AccB1I GGYRCC 3 cut(s) 1468, 4543, 4757
AccB7I CCANNNNNTGG 2 cut(s) 1244, 4540
AccBSI CCGCTC 2 cut(s) 88, 3032
AccI GTMKAC 3 cut(s) 60, 458, 1234
AccII CGCG 3 cut(s) 2003, 2125, 3203
AccIII TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
AclI AACGTT 1 cut(s) 2579
AclWI GGATC 9 cut(s) 909, 1090, 1702, 2810, 2823, 3100, 3303, 3488, 3594
AcoI YGGCCR 5 cut(s) 819, 1113, 2527, 2892, 3713
AcuI CTGAAG 3 cut(s) 659, 4161, 4428
AcyI GRCGYC 1 cut(s) 750
AdeI CACNNNGTG 3 cut(s) 1108, 3937, 4636
AfaI GTAC 7 cut(s) 388, 2079, 2921, 3368, 3393, 4746, 4759
AflIII ACRYGT 3 cut(s) 1406, 2698, 3689
AgeI ACCGGT 1 cut(s) 2042
AjiI CACGTC 2 cut(s) 1597, 3692
AjuI GAANNNNNNNTTGG 4 cut(s) 3536, 3568, 3694, 3726
AleI CACNNNNGTG 2 cut(s) 248, 370
Alw21I GWGCWC 4 cut(s) 377, 572, 1039, 2755
Alw26I GTCTC 8 cut(s) 832, 966, 3223, 3599, 3698, 3951, 4365, 4654
Alw44I GTGCAC 1 cut(s) 2751
AlwI GGATC 9 cut(s) 909, 1090, 1702, 2810, 2823, 3100, 3303, 3488, 3594
AlwNI CAGNNNCTG 2 cut(s) 133, 3814
Ama87I CYCGRG 2 cut(s) 1091, 4368
Aor13HI TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
ApaI GGGCCC 1 cut(s) 846
ApaLI GTGCAC 1 cut(s) 2751
ApeKI GCWGC 9 cut(s) 230, 942, 1190, 1586, 1723, 3808, 4176, 4732, 4856
ArsI GACNNNNNNTTYG 2 cut(s) 1419, 1451
AsiGI ACCGGT 1 cut(s) 2042
Asp700I GAANNNNTTC 3 cut(s) 201, 1557, 4167
Asp718I GGTACC 1 cut(s) 4757
AspA2I CCTAGG 1 cut(s) 3343
AspLEI GCGC 4 cut(s) 1605, 3319, 3771, 4880
AsuC2I CCSGG 3 cut(s) 1637, 3717, 4634
AsuII TTCGAA 3 cut(s) 195, 3679, 4264
AsuNHI GCTAGC 1 cut(s) 3086
AvaI CYCGRG 2 cut(s) 1091, 4368
AvrII CCTAGG 1 cut(s) 3343
BaeGI GKGCMC 4 cut(s) 846, 1772, 2755, 4091
BaeI ACNNNNGTAYC 4 cut(s) 99, 132, 4741, 4774
BalI TGGCCA 3 cut(s) 821, 1115, 2529
BamHI GGATCC 1 cut(s) 2815
BanI GGYRCC 3 cut(s) 1468, 4543, 4757
BanII GRGCYC 2 cut(s) 572, 846
BarI GAAGNNNNNNTAC 2 cut(s) 2070, 2102
BauI CACGAG 1 cut(s) 1027
BbsI GAAGAC 6 cut(s) 183, 1633, 2496, 2864, 3846, 4474
Bbv12I GWGCWC 4 cut(s) 377, 572, 1039, 2755
BbvI GCAGC 9 cut(s) 242, 954, 1177, 1598, 1735, 3820, 4163, 4744, 4843
BceAI ACGGC 8 cut(s) 355, 560, 737, 930, 1172, 2351, 2523, 2902
BciVI GTATCC 1 cut(s) 1978
BcnI CCSGG 3 cut(s) 1637, 3717, 4634
BcoDI GTCTC 8 cut(s) 832, 966, 3223, 3599, 3698, 3951, 4365, 4654
BfaI CTAG 6 cut(s) 56, 414, 2231, 3087, 3344, 4748
BfmI CTRYAG 3 cut(s) 295, 1338, 4082
BfoI RGCGCY 1 cut(s) 3772
BfuAI ACCTGC 3 cut(s) 189, 984, 1331
BfuI GTATCC 1 cut(s) 1978
BlnI CCTAGG 1 cut(s) 3343
BlpI GCTNAGC 2 cut(s) 571, 1657
BmeT110I CYCGRG 2 cut(s) 1091, 4368
BmgBI CACGTC 2 cut(s) 1597, 3692
BmrI ACTGGG 7 cut(s) 1892, 2177, 2271, 3125, 3443, 4231, 4676
BmtI GCTAGC 1 cut(s) 3090
BmuI ACTGGG 7 cut(s) 1892, 2177, 2271, 3125, 3443, 4231, 4676
BpiI GAAGAC 6 cut(s) 183, 1633, 2496, 2864, 3846, 4474
BplI GAGNNNNNCTC 6 cut(s) 1112, 1144, 2868, 2900, 4362, 4394
BpmI CTGGAG 3 cut(s) 522, 1688, 4737
Bpu10I CCTNAGC 1 cut(s) 1170
Bpu1102I GCTNAGC 2 cut(s) 571, 1657
Bpu14I TTCGAA 3 cut(s) 195, 3679, 4264
BpuEI CTTGAG 8 cut(s) 2720, 3102, 3509, 3656, 3864, 4072, 4376, 4724
BpuMI CCSGG 3 cut(s) 1637, 3717, 4634
Bsa29I ATCGAT 2 cut(s) 1608, 2383
BsaBI GATNNNNATC 1 cut(s) 1604
BsaHI GRCGYC 1 cut(s) 750
BsaI GGTCTC 3 cut(s) 832, 3223, 4365
Bse118I RCCGGY 3 cut(s) 740, 938, 2042
Bse3DI GCAATG 2 cut(s) 2958, 4649
Bse8I GATNNNNATC 1 cut(s) 1604
BseAI TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
BseCI ATCGAT 2 cut(s) 1608, 2383
BseJI GATNNNNATC 1 cut(s) 1604
BseMI GCAATG 2 cut(s) 2958, 4649
BseMII CTCAG 8 cut(s) 585, 633, 867, 977, 1671, 3003, 3157, 3594
BseRI GAGGAG 7 cut(s) 37, 91, 522, 525, 586, 3620, 4370
BseSI GKGCMC 4 cut(s) 846, 1772, 2755, 4091
BseXI GCAGC 9 cut(s) 242, 954, 1177, 1598, 1735, 3820, 4163, 4744, 4843
BseYI CCCAGC 3 cut(s) 1299, 1589, 2983
BsgI GTGCAG 2 cut(s) 167, 3126
Bsh1236I CGCG 3 cut(s) 2003, 2125, 3203
Bsh1285I CGRYCG 1 cut(s) 1476
BshNI GGYRCC 3 cut(s) 1468, 4543, 4757
BshTI ACCGGT 1 cut(s) 2042
BshVI ATCGAT 2 cut(s) 1608, 2383
BsiEI CGRYCG 1 cut(s) 1476
BsiHKAI GWGCWC 4 cut(s) 377, 572, 1039, 2755
BsiHKCI CYCGRG 2 cut(s) 1091, 4368
BslFI GGGAC 8 cut(s) 418, 1607, 2271, 2341, 2370, 3136, 4255, 4600
BsmAI GTCTC 8 cut(s) 832, 966, 3223, 3599, 3698, 3951, 4365, 4654
BsmBI CGTCTC 2 cut(s) 3698, 4654
BsmFI GGGAC 8 cut(s) 418, 1607, 2271, 2341, 2370, 3136, 4255, 4600
BsmI GAATGC 3 cut(s) 2487, 4017, 4348
Bso31I GGTCTC 3 cut(s) 832, 3223, 4365
BsoBI CYCGRG 2 cut(s) 1091, 4368
Bsp119I TTCGAA 3 cut(s) 195, 3679, 4264
Bsp120I GGGCCC 1 cut(s) 842
Bsp1286I GDGCHC 7 cut(s) 377, 572, 846, 1039, 1772, 2755, 4091
Bsp13I TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
Bsp1407I TGTACA 1 cut(s) 2077
Bsp1720I GCTNAGC 2 cut(s) 571, 1657
Bsp19I CCATGG 7 cut(s) 822, 1116, 1279, 1954, 2425, 3849, 4006
BspCNI CTCAG 8 cut(s) 584, 632, 866, 976, 1670, 3002, 3156, 3595
BspDI ATCGAT 2 cut(s) 1608, 2383
BspEI TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
BspFNI CGCG 3 cut(s) 2003, 2125, 3203
BspHI TCATGA 4 cut(s) 1507, 1714, 3984, 4846
BspMAI CTGCAG 1 cut(s) 1342
BspMI ACCTGC 3 cut(s) 189, 984, 1331
BspOI GCTAGC 1 cut(s) 3090
BspPI GGATC 9 cut(s) 909, 1090, 1702, 2810, 2823, 3100, 3303, 3488, 3594
BspT104I TTCGAA 3 cut(s) 195, 3679, 4264
BspT107I GGYRCC 3 cut(s) 1468, 4543, 4757
BspTNI GGTCTC 3 cut(s) 832, 3223, 4365
BsrBI CCGCTC 2 cut(s) 88, 3032
BsrDI GCAATG 2 cut(s) 2958, 4649
BsrFI RCCGGY 3 cut(s) 740, 938, 2042
BsrGI TGTACA 1 cut(s) 2077
BssAI RCCGGY 3 cut(s) 740, 938, 2042
BssNI GRCGYC 1 cut(s) 750
BssSI CACGAG 1 cut(s) 1027
Bst2BI CACGAG 1 cut(s) 1027
Bst6I CTCTTC 3 cut(s) 79, 109, 835
BstACI GRCGYC 1 cut(s) 750
BstAPI GCANNNNNTGC 2 cut(s) 1756, 3814
BstAUI TGTACA 1 cut(s) 2077
BstBI TTCGAA 3 cut(s) 195, 3679, 4264
BstENI CCTNNNNNAGG 2 cut(s) 537, 3014
BstFNI CGCG 3 cut(s) 2003, 2125, 3203
BstH2I RGCGCY 1 cut(s) 3772
BstHHI GCGC 4 cut(s) 1605, 3319, 3771, 4880
BstMAI GTCTC 8 cut(s) 832, 966, 3223, 3599, 3698, 3951, 4365, 4654
BstMCI CGRYCG 1 cut(s) 1476
BstMWI GCNNNNNNNGC 8 cut(s) 94, 227, 1475, 1756, 2914, 3418, 3814, 4557
BstNSI RCATGY 3 cut(s) 1410, 1571, 2702
BstSFI CTRYAG 3 cut(s) 295, 1338, 4082
BstSLI GKGCMC 4 cut(s) 846, 1772, 2755, 4091
BstUI CGCG 3 cut(s) 2003, 2125, 3203
BstV1I GCAGC 9 cut(s) 242, 954, 1177, 1598, 1735, 3820, 4163, 4744, 4843
BstV2I GAAGAC 6 cut(s) 183, 1633, 2496, 2864, 3846, 4474
BstX2I RGATCY 5 cut(s) 901, 1095, 1707, 2815, 3092
BstXI CCANNNNNNTGG 2 cut(s) 3797, 4203
BstYI RGATCY 5 cut(s) 901, 1095, 1707, 2815, 3092
Bsu15I ATCGAT 2 cut(s) 1608, 2383
BsuI GTATCC 1 cut(s) 1978
BsuTUI ATCGAT 2 cut(s) 1608, 2383
BtrI CACGTC 2 cut(s) 1597, 3692
BtsI GCAGTG 2 cut(s) 3114, 3812
BveI ACCTGC 3 cut(s) 189, 984, 1331
CaiI CAGNNNCTG 2 cut(s) 133, 3814
CciI TCATGA 4 cut(s) 1507, 1714, 3984, 4846
CfoI GCGC 4 cut(s) 1605, 3319, 3771, 4880
Cfr10I RCCGGY 3 cut(s) 740, 938, 2042
ClaI ATCGAT 2 cut(s) 1608, 2383
CseI GACGC 2 cut(s) 758, 4671
Csp6I GTAC 7 cut(s) 387, 2078, 2920, 3367, 3392, 4745, 4758
CspAI ACCGGT 1 cut(s) 2042
CspCI CAANNNNNGTGG 2 cut(s) 3308, 3343
CviQI GTAC 7 cut(s) 387, 2078, 2920, 3367, 3392, 4745, 4758
DraI TTTAAA 1 cut(s) 2730
DraIII CACNNNGTG 3 cut(s) 1108, 3937, 4636
EaeI YGGCCR 5 cut(s) 819, 1113, 2527, 2892, 3713
Eam1104I CTCTTC 3 cut(s) 79, 109, 835
EarI CTCTTC 3 cut(s) 79, 109, 835
EciI GGCGGA 3 cut(s) 40, 337, 788
Ecl136II GAGCTC 1 cut(s) 570
Eco147I AGGCCT 2 cut(s) 1395, 4812
Eco24I GRGCYC 2 cut(s) 572, 846
Eco31I GGTCTC 3 cut(s) 832, 3223, 4365
Eco32I GATATC 1 cut(s) 2468
Eco53kI GAGCTC 1 cut(s) 570
Eco57I CTGAAG 3 cut(s) 659, 4161, 4428
Eco88I CYCGRG 2 cut(s) 1091, 4368
EcoICRI GAGCTC 1 cut(s) 570
EcoNI CCTNNNNNAGG 2 cut(s) 537, 3014
EcoO109I RGGNCCY 4 cut(s) 1180, 1343, 1531, 2083
EcoRI GAATTC 3 cut(s) 155, 988, 2537
EcoRV GATATC 1 cut(s) 2468
EcoT22I ATGCAT 2 cut(s) 2487, 2837
EcoT38I GRGCYC 2 cut(s) 572, 846
Esp3I CGTCTC 2 cut(s) 3698, 4654
FalI AAGNNNNNCTT 6 cut(s) 710, 742, 1189, 1221, 3980, 4012
FaqI GGGAC 8 cut(s) 418, 1607, 2271, 2341, 2370, 3136, 4255, 4600
FauI CCCGC 1 cut(s) 780
FblI GTMKAC 3 cut(s) 60, 458, 1234
FriOI GRGCYC 2 cut(s) 572, 846
FspAI RTGCGCAY 1 cut(s) 1604
FspBI CTAG 6 cut(s) 56, 414, 2231, 3087, 3344, 4748
FspI TGCGCA 2 cut(s) 1604, 3318
GlaI GCGC 4 cut(s) 1604, 3318, 3770, 4879
GsaI CCCAGC 3 cut(s) 1303, 1593, 2987
GsuI CTGGAG 3 cut(s) 522, 1688, 4737
HaeII RGCGCY 1 cut(s) 3772
HgaI GACGC 2 cut(s) 758, 4671
HhaI GCGC 4 cut(s) 1605, 3319, 3771, 4880
Hin1I GRCGYC 1 cut(s) 750
Hin6I GCGC 4 cut(s) 1603, 3317, 3769, 4878
HinP1I GCGC 4 cut(s) 1603, 3317, 3769, 4878
HincII GTYRAC 3 cut(s) 61, 3114, 3488
HindII GTYRAC 3 cut(s) 61, 3114, 3488
Hpy99I CGWCG 4 cut(s) 749, 752, 1055, 3863
HpyCH4IV ACGT 7 cut(s) 733, 1354, 1375, 1596, 1782, 2579, 3691
HpyF10VI GCNNNNNNNGC 8 cut(s) 94, 227, 1475, 1756, 2914, 3418, 3814, 4557
HpySE526I ACGT 7 cut(s) 733, 1354, 1375, 1596, 1782, 2579, 3691
Hsp92I GRCGYC 1 cut(s) 750
HspAI GCGC 4 cut(s) 1603, 3317, 3769, 4878
Kpn2I TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
KpnI GGTACC 1 cut(s) 4761
KroI GCCGGC 1 cut(s) 938
KroNI GCCGGC 1 cut(s) 940
Lsp1109I GCAGC 9 cut(s) 242, 954, 1177, 1598, 1735, 3820, 4163, 4744, 4843
MaeI CTAG 6 cut(s) 56, 414, 2231, 3087, 3344, 4748
MaeII ACGT 7 cut(s) 733, 1354, 1375, 1596, 1782, 2579, 3691
MbiI CCGCTC 2 cut(s) 88, 3032
MfeI CAATTG 2 cut(s) 3360, 4308
MflI RGATCY 5 cut(s) 901, 1095, 1707, 2815, 3092
MhlI GDGCHC 7 cut(s) 377, 572, 846, 1039, 1772, 2755, 4091
MlsI TGGCCA 3 cut(s) 821, 1115, 2529
MluNI TGGCCA 3 cut(s) 821, 1115, 2529
MlyI GAGTC 5 cut(s) 440, 1972, 2878, 3109, 4774
MmeI TCCRAC 2 cut(s) 104, 1074
Mox20I TGGCCA 3 cut(s) 821, 1115, 2529
Mph1103I ATGCAT 2 cut(s) 2487, 2837
MroI TCCGGA 4 cut(s) 1039, 1981, 2462, 3049
MroNI GCCGGC 1 cut(s) 938
MroXI GAANNNNTTC 3 cut(s) 201, 1557, 4167
MscI TGGCCA 3 cut(s) 821, 1115, 2529
MseI TTAA 9 cut(s) 342, 1622, 1791, 2361, 2654, 2729, 2865, 4149, 4605
MslI CAYNNNNRTG 6 cut(s) 248, 370, 3613, 3848, 4201, 4682
Msp20I TGGCCA 3 cut(s) 821, 1115, 2529
MspA1I CMGCKG 2 cut(s) 1589, 4510
MunI CAATTG 2 cut(s) 3360, 4308
Mva1269I GAATGC 3 cut(s) 2487, 4017, 4348
MvnI CGCG 3 cut(s) 2003, 2125, 3203
MwoI GCNNNNNNNGC 8 cut(s) 94, 227, 1475, 1756, 2914, 3418, 3814, 4557
NaeI GCCGGC 1 cut(s) 940
NciI CCSGG 3 cut(s) 1637, 3717, 4634
NcoI CCATGG 7 cut(s) 822, 1116, 1279, 1954, 2425, 3849, 4006
NgoMIV GCCGGC 1 cut(s) 938
NheI GCTAGC 1 cut(s) 3086
NmeAIII GCCGAG 4 cut(s) 1056, 1677, 2041, 4252
NsbI TGCGCA 2 cut(s) 1604, 3318
NsiI ATGCAT 2 cut(s) 2487, 2837
NspI RCATGY 3 cut(s) 1410, 1571, 2702
NspV TTCGAA 3 cut(s) 195, 3679, 4264
OliI CACNNNNGTG 2 cut(s) 248, 370
PagI TCATGA 4 cut(s) 1507, 1714, 3984, 4846
PaqCI CACCTGC 1 cut(s) 984
PceI AGGCCT 2 cut(s) 1395, 4812
PciI ACATGT 2 cut(s) 1406, 2698
PcsI WCGNNNNNNNCGW 1 cut(s) 3697
PctI GAATGC 3 cut(s) 2487, 4017, 4348
PdiI GCCGGC 1 cut(s) 940
PdmI GAANNNNTTC 3 cut(s) 201, 1557, 4167
PflFI GACNNNGTC 3 cut(s) 1853, 2054, 3857
PflMI CCANNNNNTGG 2 cut(s) 1244, 4540
PinAI ACCGGT 1 cut(s) 2042
PleI GAGTC 5 cut(s) 439, 1972, 2877, 3109, 4773
PpsI GAGTC 5 cut(s) 439, 1972, 2877, 3109, 4773
PpuMI RGGWCCY 4 cut(s) 1180, 1343, 1531, 2083
PscI ACATGT 2 cut(s) 1406, 2698
Psp124BI GAGCTC 1 cut(s) 572
Psp1406I AACGTT 1 cut(s) 2579
Psp5II RGGWCCY 4 cut(s) 1180, 1343, 1531, 2083
PspFI CCCAGC 3 cut(s) 1299, 1589, 2983
PspOMI GGGCCC 1 cut(s) 842
PspPPI RGGWCCY 4 cut(s) 1180, 1343, 1531, 2083
PstI CTGCAG 1 cut(s) 1342
PstNI CAGNNNCTG 2 cut(s) 133, 3814
PsuI RGATCY 5 cut(s) 901, 1095, 1707, 2815, 3092
PsyI GACNNNGTC 3 cut(s) 1853, 2054, 3857
PvuII CAGCTG 1 cut(s) 1589
RsaI GTAC 7 cut(s) 388, 2079, 2921, 3368, 3393, 4746, 4759
RsaNI GTAC 7 cut(s) 387, 2078, 2920, 3367, 3392, 4745, 4758
RseI CAYNNNNRTG 6 cut(s) 248, 370, 3613, 3848, 4201, 4682
SacI GAGCTC 1 cut(s) 572
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 9 cut(s) 342, 1622, 1791, 2361, 2654, 2729, 2865, 4149, 4605
SbfI CCTGCAGG 1 cut(s) 1342
SchI GAGTC 5 cut(s) 440, 1972, 2878, 3109, 4774
SdaI CCTGCAGG 1 cut(s) 1342
SduI GDGCHC 7 cut(s) 377, 572, 846, 1039, 1772, 2755, 4091
SfcI CTRYAG 3 cut(s) 295, 1338, 4082
SfuI TTCGAA 3 cut(s) 195, 3679, 4264
SgrAI CRCCGGYG 1 cut(s) 740
SmiMI CAYNNNNRTG 6 cut(s) 248, 370, 3613, 3848, 4201, 4682
SmlI CTYRAG 8 cut(s) 2735, 3117, 3524, 3635, 3879, 4051, 4391, 4739
SmoI CTYRAG 8 cut(s) 2735, 3117, 3524, 3635, 3879, 4051, 4391, 4739
Sse8387I CCTGCAGG 1 cut(s) 1342
SseBI AGGCCT 2 cut(s) 1395, 4812
SspMI CTAG 6 cut(s) 56, 414, 2231, 3087, 3344, 4748
SstI GAGCTC 1 cut(s) 572
StuI AGGCCT 2 cut(s) 1395, 4812
TaiI ACGT 7 cut(s) 736, 1357, 1378, 1599, 1785, 2582, 3694
TatI WGTACW 2 cut(s) 2077, 3366
TauI GCSGC 3 cut(s) 1517, 1520, 3415
Tru1I TTAA 9 cut(s) 342, 1622, 1791, 2361, 2654, 2729, 2865, 4149, 4605
Tru9I TTAA 9 cut(s) 342, 1622, 1791, 2361, 2654, 2729, 2865, 4149, 4605
TseI GCWGC 9 cut(s) 230, 942, 1190, 1586, 1723, 3808, 4176, 4732, 4856
TspGWI ACGGA 3 cut(s) 103, 4036, 4481
Tth111I GACNNNGTC 3 cut(s) 1853, 2054, 3857
Van91I CCANNNNNTGG 2 cut(s) 1244, 4540
VneI GTGCAC 1 cut(s) 2751
XagI CCTNNNNNAGG 2 cut(s) 537, 3014
XceI RCATGY 3 cut(s) 1410, 1571, 2702
XcmI CCANNNNNNNNNTGG 4 cut(s) 477, 554, 894, 3831
XmaJI CCTAGG 1 cut(s) 3343
XmiI GTMKAC 3 cut(s) 60, 458, 1234
XmnI GAANNNNTTC 3 cut(s) 201, 1557, 4167
XspI CTAG 6 cut(s) 56, 414, 2231, 3087, 3344, 4748
Zsp2I ATGCAT 2 cut(s) 2487, 2837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.