Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Forward (+)

16629735 .. 16631075

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24842.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTTCGCCTAAAACGAGCTGCAAATCACAAGCCGAAAGGTGCTCACTCCTCCGCTCGCCTCCGCAAGATGGTGGATGTCGGTCCTCCTACCTCCGTCGAGAACCCCGCCACTGTCCTCTATGCTCCCGACGACTCCGCTACTGCATCGCTCTCCGGCGATGGTGGAGCTTCCTGGTTGCCTTCCCCCTCTCGCACTCACTCGGATCATGGTGAATCACCACTTTGGTCTCTGTCCCGATCTCCTTCTCCGGTGGCTCCCCCTCGCAAGCGAACCAAGGTCTCGAAGTCTTCTCAACCCTCATCTTCCCAATCTTCTGTGATCACATCAAGTAAGGGATCCTCTCTTACTACTTTTTCCACCATTGATGTCAAGAAGATCTTTGAAAAATATGTGTGTGATAGAGTGTTTGTCTTTGAGAAAAAGTTTGCACTTGCCGAATTGGGGGACATGTTTAATCAAATTGTTGTGAATCTTGGTTGGGATACTGTGCTTGATAATCTTCCCATTCCAAACTTGACAATGGTTCAGACTTTGGTGATTTTCACTCCTGACAAGATTCGTGAGGCATTGGGACTCCCAATGCCCTCTCTGGATGCAATGAAAGTTGTCCACAACGCCTTGGATTTAATAGACATAATAGCCATCATCAAGGAGTGTTATGAGAAGCAACCTACCTCACTCCCTTGGGATTTGTCTCATTCCAGCAAGCTTACCTTGGAGGAGGCGCAGCTTATTTGTTTGGTCTTTCGTCAAACTCCGGTGATCCCTCTTGAGTATTTTATGTACAAGGCCATTCGAAAAGCTGCCATTGTCGAGCGTACTCATAAGAAGGCTGCTTTGGTGTTCCCGAGCAATGGTCAGAGTAAGGTTCGTGGTCAGTCCGTTGACACTGCTGCTATATCCAAGGAACTCCAGGAAGGGTTTGTTGCTGTATGTGCTCGTCTTACTCATCTTGAGGGGGCGCACAAGGCTCTTGAGTTGAAAGTTGCTTCCTTGATGGCTCAAAGTTCTCTTGCGGTGACATCCTCACATGCTACCAACTCTGTTCCTGAAGATCCTTTGGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

38.79

Weight (kDa)

9.13

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	5 cut(s)	54, 64, 108, 138, 1019
AclWI	GGATC	5 cut(s)	213, 333, 346, 760, 1052
AcuI	CTGAAG	1 cut(s)	1074
AfaI	GTAC	2 cut(s)	788, 823
AfiI	CCNNNNNNNGG	3 cut(s)	70, 444, 857
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	386, 985
AjnI	CCWGG	2 cut(s)	173, 915
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AluBI	AGCT	5 cut(s)	20, 170, 712, 733, 806
AluI	AGCT	5 cut(s)	20, 170, 712, 733, 806
Alw21I	GWGCWC	2 cut(s)	46, 943
Alw26I	GTCTC	3 cut(s)	234, 286, 702
AlwI	GGATC	5 cut(s)	213, 333, 346, 760, 1052
Ama87I	CYCGRG	1 cut(s)	850
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	5 cut(s)	20, 730, 806, 836, 896
AspLEI	GCGC	2 cut(s)	730, 967
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	5 cut(s)	210, 224, 550, 775, 1033
AsuII	TTCGAA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	46, 943
BbvI	GCAGC	5 cut(s)	7, 742, 793, 823, 883
BccI	CCATC	4 cut(s)	64, 155, 653, 994
BciT130I	CCWGG	2 cut(s)	175, 917
BciVI	GTATCC	1 cut(s)	478
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	3 cut(s)	234, 286, 702
BfaI	CTAG	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	5 cut(s)	21, 731, 807, 837, 897
BlsI	GCNGC	5 cut(s)	22, 732, 808, 838, 898
Bme1390I	CCNGG	2 cut(s)	175, 917
Bme18I	GGWCC	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	258, 340
BmrFI	CCNGG	2 cut(s)	175, 917
BmsI	GCATC	2 cut(s)	155, 586
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	899
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	3 cut(s)	794, 977, 998
BsaI	GGTCTC	2 cut(s)	234, 286
BsaJI	CCNNGG	5 cut(s)	276, 621, 686, 717, 906
BsaWI	WCCGGW	2 cut(s)	250, 760
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 444, 857
Bse3DI	GCAATG	2 cut(s)	606, 862
BseBI	CCWGG	2 cut(s)	175, 917
BseDI	CCNNGG	5 cut(s)	276, 621, 686, 717, 906
BseGI	GGATG	3 cut(s)	82, 601, 1025
BseLI	CCNNNNNNNGG	3 cut(s)	70, 444, 857
BseMI	GCAATG	2 cut(s)	606, 862
BseRI	GAGGAG	2 cut(s)	40, 737
BseXI	GCAGC	5 cut(s)	7, 742, 793, 823, 883
BshFI	GGCC	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	46, 943
BsiHKCI	CYCGRG	1 cut(s)	850
BsiSI	CCGG	3 cut(s)	156, 251, 761
BslFI	GGGAC	3 cut(s)	220, 461, 588
BslI	CCNNNNNNNGG	3 cut(s)	70, 444, 857
BsmAI	GTCTC	3 cut(s)	234, 286, 702
BsmFI	GGGAC	3 cut(s)	220, 461, 588
BsnI	GGCC	1 cut(s)	794
Bso31I	GGTCTC	2 cut(s)	234, 286
BsoBI	CYCGRG	1 cut(s)	850
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	46, 943
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
BspACI	CCGC	5 cut(s)	54, 64, 108, 138, 1019
BspANI	GGCC	1 cut(s)	794
BspLI	GGNNCC	2 cut(s)	258, 340
BspPI	GGATC	5 cut(s)	213, 333, 346, 760, 1052
BspT104I	TTCGAA	1 cut(s)	799
BspTNI	GGTCTC	2 cut(s)	234, 286
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	606, 862
BsrGI	TGTACA	1 cut(s)	786
BssECI	CCNNGG	5 cut(s)	276, 621, 686, 717, 906
BssMI	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
BssT1I	CCWWGG	5 cut(s)	276, 621, 686, 717, 906
Bst2UI	CCWGG	2 cut(s)	175, 917
Bst4CI	ACNGT	2 cut(s)	115, 490
BstAUI	TGTACA	1 cut(s)	786
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	3 cut(s)	58, 269, 710
BstF5I	GGATG	3 cut(s)	82, 601, 1025
BstHHI	GCGC	2 cut(s)	730, 967
BstKTI	GATC	7 cut(s)	208, 242, 324, 341, 381, 768, 1060
BstMAI	GTCTC	3 cut(s)	234, 286, 702
BstMBI	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	938, 971
BstNI	CCWGG	2 cut(s)	175, 917
BstNSI	RCATGY	2 cut(s)	454, 1037
BstSCI	CCNGG	2 cut(s)	173, 915
BstV1I	GCAGC	5 cut(s)	7, 742, 793, 823, 883
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	3 cut(s)	338, 378, 1057
BstYI	RGATCY	3 cut(s)	338, 378, 1057
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	794
BtgZI	GCGATG	2 cut(s)	132, 174
BtsCI	GGATG	3 cut(s)	82, 601, 1025
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	2 cut(s)	111, 891
Cac8I	GCNNGC	3 cut(s)	58, 269, 710
CfoI	GCGC	2 cut(s)	730, 967
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	787, 822
CviAII	CATG	3 cut(s)	209, 451, 1034
CviQI	GTAC	2 cut(s)	787, 822
DpnI	GATC	7 cut(s)	207, 241, 323, 340, 380, 767, 1059
DpnII	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
Eco130I	CCWWGG	5 cut(s)	276, 621, 686, 717, 906
Eco31I	GGTCTC	2 cut(s)	234, 286
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	1074
Eco88I	CYCGRG	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	173, 915
EcoT14I	CCWWGG	5 cut(s)	276, 621, 686, 717, 906
ErhI	CCWWGG	5 cut(s)	276, 621, 686, 717, 906
FaeI	CATG	3 cut(s)	212, 454, 1037
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 701, 733
FaqI	GGGAC	3 cut(s)	220, 461, 588
FatI	CATG	3 cut(s)	208, 450, 1033
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	5 cut(s)	21, 731, 807, 837, 897
FokI	GGATG	3 cut(s)	89, 608, 1012
Fsp4HI	GCNGC	5 cut(s)	21, 731, 807, 837, 897
FspBI	CTAG	1 cut(s)	1072
GlaI	GCGC	2 cut(s)	729, 966
GluI	GCNGC	5 cut(s)	21, 731, 807, 837, 897
GsuI	CTGGAG	1 cut(s)	899
HaeIII	GGCC	1 cut(s)	794
HapII	CCGG	3 cut(s)	156, 251, 761
HhaI	GCGC	2 cut(s)	730, 967
Hin1II	CATG	3 cut(s)	212, 454, 1037
Hin6I	GCGC	2 cut(s)	728, 965
HinP1I	GCGC	2 cut(s)	728, 965
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	5 cut(s)	134, 215, 472, 559, 576
HpaII	CCGG	3 cut(s)	156, 251, 761
HphI	GGTGA	5 cut(s)	210, 224, 550, 775, 1033
Hpy166II	GTNNAC	2 cut(s)	613, 889
Hpy188I	TCNGA	3 cut(s)	205, 531, 864
Hpy8I	GTNNAC	2 cut(s)	613, 889
Hpy99I	CGWCG	2 cut(s)	101, 134
HpyAV	CCTTC	4 cut(s)	192, 255, 826, 914
HpyCH4III	ACNGT	2 cut(s)	115, 490
HpyCH4V	TGCA	4 cut(s)	23, 146, 431, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	938, 971
Hsp92II	CATG	3 cut(s)	212, 454, 1037
HspAI	GCGC	2 cut(s)	728, 965
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
LmnI	GCTCC	3 cut(s)	130, 167, 262
Lsp1109I	GCAGC	5 cut(s)	7, 742, 793, 823, 883
LweI	GCATC	2 cut(s)	155, 586
MaeI	CTAG	1 cut(s)	1072
MaeIII	GTNAC	1 cut(s)	1021
MalI	GATC	7 cut(s)	207, 241, 323, 340, 380, 767, 1059
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
MboII	GAAGA	6 cut(s)	282, 297, 306, 388, 494, 1067
MflI	RGATCY	3 cut(s)	338, 378, 1057
MhlI	GDGCHC	2 cut(s)	46, 943
MluCI	AATT	2 cut(s)	440, 462
MlyI	GAGTC	2 cut(s)	128, 570
MseI	TTAA	2 cut(s)	456, 629
MspI	CCGG	3 cut(s)	156, 251, 761
MspR9I	CCNGG	2 cut(s)	175, 917
MvaI	CCWGG	2 cut(s)	175, 917
MwoI	GCNNNNNNNGC	2 cut(s)	938, 971
NdeII	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
NlaIII	CATG	3 cut(s)	212, 454, 1037
NlaIV	GGNNCC	2 cut(s)	258, 340
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	2 cut(s)	454, 1037
NspV	TTCGAA	1 cut(s)	799
PciI	ACATGT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	3 cut(s)	215, 472, 559
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	5 cut(s)	22, 732, 808, 838, 898
PleI	GAGTC	2 cut(s)	128, 570
PpsI	GAGTC	2 cut(s)	128, 570
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	173, 915
PspGI	CCWGG	2 cut(s)	173, 915
PspN4I	GGNNCC	2 cut(s)	258, 340
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	3 cut(s)	338, 378, 1057
RsaI	GTAC	2 cut(s)	788, 823
RsaNI	GTAC	2 cut(s)	787, 822
SaqAI	TTAA	2 cut(s)	456, 629
SatI	GCNGC	5 cut(s)	21, 731, 807, 837, 897
Sau3AI	GATC	7 cut(s)	205, 239, 321, 338, 378, 765, 1057
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	128, 570
ScrFI	CCNGG	2 cut(s)	175, 917
SduI	GDGCHC	2 cut(s)	46, 943
SfaNI	GCATC	2 cut(s)	155, 586
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	773, 956, 977
SmoI	CTYRAG	3 cut(s)	773, 956, 977
Sse9I	AATT	2 cut(s)	440, 462
SsiI	CCGC	5 cut(s)	54, 64, 108, 138, 1019
SspMI	CTAG	1 cut(s)	1072
StyD4I	CCNGG	2 cut(s)	173, 915
StyI	CCWWGG	5 cut(s)	276, 621, 686, 717, 906
TaaI	ACNGT	2 cut(s)	115, 490
TaqI	TCGA	4 cut(s)	99, 284, 799, 816
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	440, 462
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	3 cut(s)	215, 472, 559
Tru1I	TTAA	2 cut(s)	456, 629
Tru9I	TTAA	2 cut(s)	456, 629
TscAI	CASTG	2 cut(s)	118, 898
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	5 cut(s)	20, 730, 806, 836, 896
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	1 cut(s)	617
TspGWI	ACGGA	2 cut(s)	85, 874
TspRI	CASTG	2 cut(s)	118, 898
VpaK11BI	GGWCC	1 cut(s)	83
XceI	RCATGY	2 cut(s)	454, 1037
XspI	CTAG	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.