Rh4CG200500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001194
Physical Location & Seq
Reverse (-)
42536013 .. 42536480
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG200500.1

Sequence Viewer

Length: 468 bp
ATGCCTCCCTCTAAGCCTGCTCTGCGCTCTCGGAAGAATCAAGTTGTTTCTCCTGCTTCCTCTCAAGATGCTACCTTGGCTGCGCCATCTTCTTCAAGACCTGCGGCCTCCAGTAAGCACCCCTCAAAGAAGACCAAAAGAGTTCAAGAGTCTTCTCCAGATGCCCCATCTTCCACTTTGGACTCCTTTCGATTTGCATCTGCTGACTCTCAATTCAGGTTTTATTCCTTCTCTTCTCACAGACCGGTTCTTTTTGAGAAGAAATTTGATCTTCCTAGTCTTGGTCCTGCATTCTCTGACATTTTGGCTTATTATGGTTGGTTGGAATTGCTTTCTGGGTTATCTGATGCAAACCTTTCTATTGTCCGAGAGTTTTATGCTAATTTTCCATCCCATATTGATTATGTTGCTCCCTCTTCGGAACCGGATTTCAATGCTCATCCGTATCAAGTCTTTGTTCGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

9.22

Isoelectric Point (pI)

78.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 96, 146, 433
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 244
AspLEI GCGC 2 cut(s) 27, 85
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 137, 144
BbvI GCAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 94, 175, 397
BfaI CTAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 2 cut(s) 81, 105
BlsI GCNGC 2 cut(s) 82, 106
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 423
BmsI GCATC 4 cut(s) 58, 151, 206, 337
BpiI GAAGAC 2 cut(s) 137, 144
BpmI CTGGAG 2 cut(s) 94, 141
BpuEI CTTGAG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 2 cut(s) 244, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 389, 439
BseJI GATNNNNATC 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 244
BsiSI CCGG 2 cut(s) 245, 425
BslI CCNNNNNNNGG 1 cut(s) 281
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 75
Bst6I CTCTTC 2 cut(s) 238, 421
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 389, 439
BstHHI GCGC 2 cut(s) 27, 85
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 22, 77
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 2 cut(s) 137, 144
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 389, 439
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 2 cut(s) 27, 85
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 284
CspAI ACCGGT 1 cut(s) 244
CviJI RGCY 4 cut(s) 16, 80, 107, 308
CviKI_1 RGCY 4 cut(s) 16, 80, 107, 308
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 238, 421
EarI CTCTTC 2 cut(s) 238, 421
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 4 cut(s) 315, 378, 396, 405
Fnu4HI GCNGC 2 cut(s) 81, 105
FokI GGATG 2 cut(s) 376, 426
Fsp4HI GCNGC 2 cut(s) 81, 105
FspBI CTAG 1 cut(s) 276
GlaI GCGC 2 cut(s) 26, 84
GluI GCNGC 2 cut(s) 81, 105
GsuI CTGGAG 2 cut(s) 94, 141
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 245, 425
HhaI GCGC 2 cut(s) 27, 85
Hin6I GCGC 2 cut(s) 25, 83
HinP1I GCGC 2 cut(s) 25, 83
HinfI GANTC 4 cut(s) 37, 149, 182, 206
HpaII CCGG 2 cut(s) 245, 425
Hpy188I TCNGA 5 cut(s) 33, 298, 346, 368, 421
Hpy188III TCNNGA 4 cut(s) 65, 96, 146, 158
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 197, 290, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 77
HpyF3I CTNAG 1 cut(s) 12
HspAI GCGC 2 cut(s) 25, 83
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 4 cut(s) 58, 151, 206, 337
MaeI CTAG 1 cut(s) 276
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MluCI AATT 4 cut(s) 212, 263, 326, 382
MlyI GAGTC 3 cut(s) 158, 176, 200
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 6 cut(s) 15, 19, 70, 118, 133, 424
MspI CCGG 2 cut(s) 245, 425
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 22, 77
NdeII GATC 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 423
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 37
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 2 cut(s) 82, 106
PleI GAGTC 3 cut(s) 157, 176, 200
PpsI GAGTC 3 cut(s) 157, 176, 200
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 284
SatI GCNGC 2 cut(s) 81, 105
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 3 cut(s) 158, 176, 200
SetI ASST 4 cut(s) 77, 103, 221, 357
SfaNI GCATC 4 cut(s) 58, 151, 206, 337
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 4 cut(s) 212, 263, 326, 382
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 190
TasI AATT 4 cut(s) 212, 263, 326, 382
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 37
TseI GCWGC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 263
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.