Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Reverse (-)

42535341 .. 42535895

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATGAGTTGTATTGGAATAAGGAGGCAGTCAATCCATCTGACACCTATGCTACTCTTGGTCATTTGTCTCAGCTCACCAAGCTTGTATATCATTTTGTGACCAGTTACTTGTGGCCGTCTTCTCAGTCTTCTCAACTCTCCATCGGACCGGGTGCTTTAGCTGTTGCTATTAAGACTAGAAAGTTTTCCTCCATTCCTCTTCATCAATATGTCTTTGATAGAGTGAAGGAAGCTGCTTTAACCAAGGGAACCAGTACCTCAGCCTTCCTTATTTTTCCATGCCTGATCACTCAAATCTGCAATGCAAGCAATGTTCCCACCTCTCGTGATGATGATTGGGCTGAGGCCCCCTTGTATAATCTGCATTCTCTGTCTCGCAGTGATGGGCAAAGCTCTCTTCCATGCCCCTCCATCAATGATGAAGCTTGGTACACGCTATTGGATCAGCGTTTTTCTCGTCTTGAAGGGTCGTTTGCTGCACTTCAGTCCTCCATCAAAGAGACCCTGGCTCCTTTTTCTCGTCTCATTGAGCTCATGAGCAGGCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.54

Weight (kDa)

6.06

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_32	PF20167	21 - 107	5.2e-10	Putative plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	453
AcoI	YGGCCR	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	259, 434
AgsI	TTSAA	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	7 cut(s)	76, 85, 164, 236, 396, 428, 535
AluI	AGCT	7 cut(s)	76, 85, 164, 236, 396, 428, 535
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	4 cut(s)	75, 381, 497, 530
AlwI	GGATC	1 cut(s)	453
AoxI	GGCC	3 cut(s)	116, 348, 545
ApeKI	GCWGC	2 cut(s)	236, 479
Asp700I	GAANNNNTTC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	149, 349
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	114, 123
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	2 cut(s)	262, 345
BbvI	GCAGC	2 cut(s)	223, 466
BccI	CCATC	5 cut(s)	46, 152, 380, 422, 503
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	509
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	4 cut(s)	75, 381, 497, 530
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	237, 480
BlsI	GCNGC	2 cut(s)	238, 481
Bme1390I	CCNGG	2 cut(s)	153, 509
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 349
BmiI	GGNNCC	3 cut(s)	253, 351, 513
BmrFI	CCNGG	2 cut(s)	153, 509
BpiI	GAAGAC	2 cut(s)	114, 123
Bpu10I	CCTNAGC	2 cut(s)	262, 345
BpuMI	CCSGG	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	246, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bse1I	ACTGG	2 cut(s)	105, 255
Bse3DI	GCAATG	2 cut(s)	310, 319
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	246, 507
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	2 cut(s)	310, 319
BseMII	CTCAG	4 cut(s)	86, 140, 276, 336
BseNI	ACTGG	2 cut(s)	105, 255
BseXI	GCAGC	2 cut(s)	223, 466
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	118, 350, 547
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	4 cut(s)	75, 381, 497, 530
BsmBI	CGTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	118, 350, 547
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	288, 445
BspANI	GGCC	3 cut(s)	118, 350, 547
BspCNI	CTCAG	4 cut(s)	85, 139, 275, 337
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	253, 351, 513
BspPI	GGATC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	310, 319
BsrI	ACTGG	2 cut(s)	105, 255
BssECI	CCNNGG	2 cut(s)	246, 507
BssMI	GATC	2 cut(s)	288, 445
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	207, 405
BstC8I	GCNNGC	2 cut(s)	310, 545
BstDEI	CTNAG	4 cut(s)	72, 126, 262, 345
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	291, 448
BstMAI	GTCTC	4 cut(s)	75, 381, 497, 530
BstMBI	GATC	2 cut(s)	288, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 309
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	151, 507
BstV1I	GCAGC	2 cut(s)	223, 466
BstV2I	GAAGAC	2 cut(s)	114, 123
BsuRI	GGCC	3 cut(s)	118, 350, 547
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	310, 545
CciI	TCATGA	1 cut(s)	537
Cfr13I	GGNCC	2 cut(s)	149, 349
CpoI	CGGWCCG	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	258, 433
CspI	CGGWCCG	1 cut(s)	149
CviAII	CATG	3 cut(s)	282, 405, 538
CviQI	GTAC	2 cut(s)	258, 433
DdeI	CTNAG	4 cut(s)	72, 126, 262, 345
DpnI	GATC	2 cut(s)	290, 447
DpnII	GATC	2 cut(s)	288, 445
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	207, 405
EarI	CTCTTC	2 cut(s)	207, 405
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	3 cut(s)	285, 408, 541
FaiI	YATR	7 cut(s)	51, 91, 213, 283, 360, 406, 539
FatI	CATG	3 cut(s)	281, 404, 537
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	237, 480
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	2 cut(s)	237, 480
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	237, 480
HaeIII	GGCC	3 cut(s)	118, 350, 547
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	3 cut(s)	285, 408, 541
HindIII	AAGCTT	2 cut(s)	83, 426
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	43, 149, 554
Hpy188III	TCNNGA	3 cut(s)	329, 464, 538
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	223, 277, 461
HpyCH4V	TGCA	4 cut(s)	303, 308, 367, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 309
HpyF3I	CTNAG	4 cut(s)	72, 126, 262, 345
Hsp92II	CATG	3 cut(s)	285, 408, 541
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	288, 445
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	7 cut(s)	118, 165, 268, 299, 494, 521, 529
Lsp1109I	GCAGC	2 cut(s)	223, 466
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	100, 107
MalI	GATC	2 cut(s)	290, 447
MboI	GATC	2 cut(s)	288, 445
MboII	GAAGA	4 cut(s)	114, 123, 194, 392
MhlI	GDGCHC	1 cut(s)	537
MnlI	CCTC	8 cut(s)	19, 202, 210, 271, 334, 340, 421, 502
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	2 cut(s)	174, 242
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	153, 509
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	82, 309
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	288, 445
NlaIII	CATG	3 cut(s)	285, 408, 541
NlaIV	GGNNCC	3 cut(s)	253, 351, 513
NmuCI	GTSAC	1 cut(s)	100
PagI	TCATGA	1 cut(s)	537
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	238, 481
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	3 cut(s)	253, 351, 513
PspPI	GGNCC	2 cut(s)	149, 349
RsaI	GTAC	2 cut(s)	259, 434
RsaNI	GTAC	2 cut(s)	258, 433
RseI	CAYNNNNRTG	1 cut(s)	210
Rsr2I	CGGWCCG	1 cut(s)	149
RsrII	CGGWCCG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	174, 242
SatI	GCNGC	2 cut(s)	237, 480
Sau3AI	GATC	2 cut(s)	288, 445
Sau96I	GGNCC	2 cut(s)	149, 349
ScrFI	CCNGG	2 cut(s)	153, 509
SduI	GDGCHC	1 cut(s)	537
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	210
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	151, 507
StyI	CCWWGG	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	174, 242
Tru9I	TTAA	2 cut(s)	174, 242
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	236, 479
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	194, 438
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.