Rroxscaffold_1G00029530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001194
Physical Location & Seq
Forward (+)
38109428 .. 38111705
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029530.1

Sequence Viewer

Length: 1437 bp
ATGGCTCGCACTCGCGGTGGCAAGGCTCCTCCATCTGGTTATCACCGTGGCGGCACTACTCCCCGGCCTACTGGTTCCCGGGTCTCCTCTCGCTTGCGTAATCTCCGCGCCTCGCAAGCTCCGCCCACTTCCGGTTCTTTCCCGGTTCCGATTGTCTCTCCGACTCCGCCGCCGTCCAGTTCGTCATCGTCTTCATCATCTCTGCCATTGGACACAGTTCCTGCTGCTGCGCCGCCTCTGGCCTCTCCTTCTGGTTCGCCTTCCGCCTCCTCACCTCACTCCTTGTCCTCCTTGTCCGGTTCTGGCTCGGATCCCGCATTTGCGCCTCCTCCACCATCTCCCCGGCGTAAGCGCAAGGCTGCATCGTCTTCACCTCGGTCCTGCAAGCATCCCAAGCGTGTTCCAAAGCATACTCATGTTTCGTCCAAGCCCCATCCAGCCTCCAGGCCCAAACCCAAATCGGTTTCCAAGCTTTCTCACCCAGATCCGCCACAGCCCACTGCTCGAAAGAAGCGTACCAAAATCTCTGAGTACGAGCTTCCTGAGCAGGTTGACTTGTATCACTCCTCTGTGTCACCTCCTTGTGCTGTCTGGGTTCGTGGTCAGCATATTTTGTTCACTCCTGCTGTTATTCGTATCTGTCTTGGACTGTCGTCTCCTCGCCAGGACGCTATTGACCTTGCTGCTCCCTTCCTTGCCAATCCGGATATTGACACTTTGATCCATGCCTTATATCGCAGCACTCCAAGGGTTAGTCCTCCATATCTCTCTAGTGGGCAAATGGATGAGTGGATTCGCCTTCTTGGTTATTTAGTTCGCAACATGCTCTATCCAACCTCTCAGACCAGCAAGATTTTTCGAAGTGAGGCTGCTATGATCCATGCACTAAATCTGCAGAGCCATTATCTTCCTCCTGAGCACTACATTTATGCCTCTATTCGCCATGCTGCGGTTGTCCATCGCCATGCCTCTCGTGCTTCTCTTGTGTTCCGTTCTATCATCACTCGGATCTGTGCTCGGTTTGGTGCTTCTTTTCTTCCTAGAGATGATATTGGCATACCCCCTGTTCCGGTGACCAACTCTACTTTAGCTCGGGGTACAGGTCAGGCTCTTGATGGTGGTCTTCATATTGATTCTGTGATCATGTTAAAGGTTCTTGAGGATCATGTTCTAGGACTTCGCACTCTCATTCATGGGGTTCATGCTCAGCTTGATACACTGGTTACCCGAGTTCGTGGGCTTGAGCACTTTTTCTGGATTACATTCGTGCTTCTCATCCACCCCCTGCTGATGGTTCTCCTGATCCTCCACCTGGACCTAGTTCTGCTATTACACCTGACGATACGCCTATTGCTGCTGATGAGGCTGCAGAGGTTGCGGCTATTCCTCTTCCTGAGCCTGTTGCCGCTGTTGTTGATGAGATTGAAGATCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

478

Amino Acids

52.29

Weight (kDa)

10.98

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 193 - 342 1.3e-08 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AccII CGCG 2 cut(s) 15, 108
AccIII TCCGGA 1 cut(s) 703
AclWI GGATC 9 cut(s) 305, 318, 479, 715, 871, 1016, 1170, 1297, 1423
AfaI GTAC 3 cut(s) 517, 533, 1099
AfiI CCNNNNNNNGG 6 cut(s) 35, 131, 949, 1069, 1291, 1312
AgsI TTSAA 1 cut(s) 1426
AjnI CCWGG 3 cut(s) 443, 663, 1311
AluBI AGCT 5 cut(s) 119, 472, 538, 1091, 1210
AluI AGCT 5 cut(s) 119, 472, 538, 1091, 1210
Alw21I GWGCWC 3 cut(s) 921, 1018, 1248
Alw26I GTCTC 3 cut(s) 88, 160, 660
AlwI GGATC 9 cut(s) 305, 318, 479, 715, 871, 1016, 1170, 1297, 1423
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 3 cut(s) 78, 1092, 1227
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 3 cut(s) 65, 240, 446
ApeKI GCWGC 9 cut(s) 224, 227, 359, 683, 738, 869, 947, 1354, 1366
AspLEI GCGC 4 cut(s) 110, 232, 325, 354
AspS9I GGNCC 3 cut(s) 378, 447, 1315
AsuC2I CCSGG 5 cut(s) 64, 79, 80, 143, 343
AsuHPI GGTGA 6 cut(s) 35, 264, 363, 470, 567, 1084
AsuII TTCGAA 1 cut(s) 859
AvaI CYCGRG 3 cut(s) 78, 1092, 1227
AvaII GGWCC 2 cut(s) 378, 1315
BaeI ACNNNNGTAYC 2 cut(s) 1206, 1239
BamHI GGATCC 1 cut(s) 310
BauI CACGAG 1 cut(s) 972
BbsI GAAGAC 3 cut(s) 183, 360, 1115
Bbv12I GWGCWC 3 cut(s) 921, 1018, 1248
BbvI GCAGC 9 cut(s) 211, 214, 346, 670, 750, 856, 934, 1341, 1353
BccI CCATC 6 cut(s) 40, 343, 441, 966, 1109, 1285
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 3 cut(s) 445, 665, 1313
BclI TGATCA 1 cut(s) 1140
BcnI CCSGG 5 cut(s) 64, 79, 80, 143, 343
BcoDI GTCTC 3 cut(s) 88, 160, 660
BfaI CTAG 4 cut(s) 771, 1041, 1172, 1319
BfmI CTRYAG 2 cut(s) 893, 1367
BfuAI ACCTGC 1 cut(s) 538
BlpI GCTNAGC 1 cut(s) 1206
Bme1390I CCNGG 8 cut(s) 64, 79, 80, 143, 343, 445, 665, 1313
Bme18I GGWCC 2 cut(s) 378, 1315
BmeT110I CYCGRG 3 cut(s) 78, 1092, 1227
BmgT120I GGNCC 3 cut(s) 378, 447, 1315
BmiI GGNNCC 4 cut(s) 27, 76, 147, 312
BmrFI CCNGG 8 cut(s) 64, 79, 80, 143, 343, 445, 665, 1313
BmsI GCATC 2 cut(s) 371, 397
BoxI GACNNNNGTC 1 cut(s) 652
BpiI GAAGAC 3 cut(s) 183, 360, 1115
BpmI CTGGAG 1 cut(s) 427
Bpu10I CCTNAGC 3 cut(s) 543, 915, 1394
Bpu1102I GCTNAGC 1 cut(s) 1206
Bpu14I TTCGAA 1 cut(s) 859
BpuEI CTTGAG 2 cut(s) 1178, 1262
BpuMI CCSGG 5 cut(s) 64, 79, 80, 143, 343
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 6 cut(s) 46, 62, 78, 341, 374, 746
BsaWI WCCGGW 4 cut(s) 131, 296, 703, 1069
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 131, 949, 1069, 1291, 1312
Bse1I ACTGG 3 cut(s) 76, 177, 1224
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 3 cut(s) 445, 665, 1313
BseDI CCNNGG 6 cut(s) 46, 62, 78, 341, 374, 746
BseGI GGATG 4 cut(s) 388, 433, 790, 1275
BseLI CCNNNNNNNGG 6 cut(s) 35, 131, 949, 1069, 1291, 1312
BseMII CTCAG 6 cut(s) 519, 534, 854, 906, 1220, 1385
BseNI ACTGG 3 cut(s) 76, 177, 1224
BseRI GAGGAG 6 cut(s) 18, 76, 259, 318, 556, 648
BseXI GCAGC 9 cut(s) 211, 214, 346, 670, 750, 856, 934, 1341, 1353
Bsh1236I CGCG 2 cut(s) 15, 108
BshFI GGCC 3 cut(s) 67, 242, 448
BsiHKAI GWGCWC 3 cut(s) 921, 1018, 1248
BsiHKCI CYCGRG 3 cut(s) 78, 1092, 1227
BsiSI CCGG 8 cut(s) 64, 79, 132, 143, 297, 343, 704, 1070
BslI CCNNNNNNNGG 6 cut(s) 35, 131, 949, 1069, 1291, 1312
BsmAI GTCTC 3 cut(s) 88, 160, 660
BsmBI CGTCTC 1 cut(s) 660
BsnI GGCC 3 cut(s) 67, 242, 448
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 3 cut(s) 78, 1092, 1227
Bsp119I TTCGAA 1 cut(s) 859
Bsp1286I GDGCHC 3 cut(s) 921, 1018, 1248
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
Bsp1720I GCTNAGC 1 cut(s) 1206
BspANI GGCC 3 cut(s) 67, 242, 448
BspCNI CTCAG 6 cut(s) 520, 535, 853, 907, 1219, 1386
BspEI TCCGGA 1 cut(s) 703
BspFNI CGCG 2 cut(s) 15, 108
BspLI GGNNCC 4 cut(s) 27, 76, 147, 312
BspMAI CTGCAG 2 cut(s) 897, 1371
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 9 cut(s) 305, 318, 479, 715, 871, 1016, 1170, 1297, 1423
BspT104I TTCGAA 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 88
BsrI ACTGG 3 cut(s) 76, 177, 1224
BssECI CCNNGG 6 cut(s) 46, 62, 78, 341, 374, 746
BssMI GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
BssSI CACGAG 1 cut(s) 972
BssT1I CCWWGG 1 cut(s) 746
Bst2BI CACGAG 1 cut(s) 972
Bst2UI CCWGG 3 cut(s) 445, 665, 1313
Bst4CI ACNGT 3 cut(s) 47, 217, 651
Bst6I CTCTTC 1 cut(s) 1394
BstAPI GCANNNNNTGC 1 cut(s) 1375
BstBI TTCGAA 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 7, 95, 117, 386
BstDEI CTNAG 6 cut(s) 528, 543, 840, 915, 1206, 1394
BstDSI CCRYGG 1 cut(s) 46
BstEII GGTNACC 2 cut(s) 1072, 1222
BstF5I GGATG 4 cut(s) 388, 433, 790, 1275
BstFNI CGCG 2 cut(s) 15, 108
BstHHI GCGC 4 cut(s) 110, 232, 325, 354
BstKTI GATC 9 cut(s) 313, 487, 723, 879, 1011, 1143, 1165, 1305, 1431
BstMAI GTCTC 3 cut(s) 88, 160, 660
BstMBI GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
BstMWI GCNNNNNNNGC 7 cut(s) 116, 121, 394, 544, 974, 1363, 1375
BstNI CCWGG 3 cut(s) 445, 665, 1313
BstNSI RCATGY 1 cut(s) 826
BstPAI GACNNNNGTC 1 cut(s) 652
BstPI GGTNACC 2 cut(s) 1072, 1222
BstSCI CCNGG 8 cut(s) 62, 77, 78, 141, 341, 443, 663, 1311
BstSFI CTRYAG 2 cut(s) 893, 1367
BstUI CGCG 2 cut(s) 15, 108
BstV1I GCAGC 9 cut(s) 211, 214, 346, 670, 750, 856, 934, 1341, 1353
BstV2I GAAGAC 3 cut(s) 183, 360, 1115
BstX2I RGATCY 4 cut(s) 310, 484, 1008, 1428
BstYI RGATCY 4 cut(s) 310, 484, 1008, 1428
BsuRI GGCC 3 cut(s) 67, 242, 448
BtgI CCRYGG 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 944
BtsCI GGATG 4 cut(s) 388, 433, 790, 1275
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 2 cut(s) 498, 1217
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 4 cut(s) 7, 95, 117, 386
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 4 cut(s) 110, 232, 325, 354
Cfr13I GGNCC 3 cut(s) 378, 447, 1315
Cfr9I CCCGGG 1 cut(s) 78
CseI GACGC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 516, 532, 1098
CviQI GTAC 3 cut(s) 516, 532, 1098
DdeI CTNAG 6 cut(s) 528, 543, 840, 915, 1206, 1394
DpnI GATC 9 cut(s) 312, 486, 722, 878, 1010, 1142, 1164, 1304, 1430
DpnII GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
Eam1104I CTCTTC 1 cut(s) 1394
EarI CTCTTC 1 cut(s) 1394
EciI GGCGGA 4 cut(s) 111, 156, 253, 477
Eco130I CCWWGG 1 cut(s) 746
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 378, 1315
Eco88I CYCGRG 3 cut(s) 78, 1092, 1227
Eco91I GGTNACC 2 cut(s) 1072, 1222
EcoO65I GGTNACC 2 cut(s) 1072, 1222
EcoRII CCWGG 3 cut(s) 443, 663, 1311
EcoT14I CCWWGG 1 cut(s) 746
ErhI CCWWGG 1 cut(s) 746
Esp3I CGTCTC 1 cut(s) 660
FauI CCCGC 1 cut(s) 322
FbaI TGATCA 1 cut(s) 1140
FokI GGATG 4 cut(s) 375, 420, 797, 1262
FspBI CTAG 4 cut(s) 771, 1041, 1172, 1319
GlaI GCGC 4 cut(s) 109, 231, 324, 353
GsuI CTGGAG 1 cut(s) 427
HaeIII GGCC 3 cut(s) 67, 242, 448
HapII CCGG 8 cut(s) 64, 79, 132, 143, 297, 343, 704, 1070
HgaI GACGC 1 cut(s) 677
HhaI GCGC 4 cut(s) 110, 232, 325, 354
Hin6I GCGC 4 cut(s) 108, 230, 323, 352
HinP1I GCGC 4 cut(s) 108, 230, 323, 352
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 163, 793, 1133
HpaII CCGG 8 cut(s) 64, 79, 132, 143, 297, 343, 704, 1070
HphI GGTGA 6 cut(s) 35, 264, 363, 470, 567, 1084
Hpy166II GTNNAC 2 cut(s) 553, 618
Hpy188I TCNGA 6 cut(s) 150, 162, 310, 529, 843, 1008
Hpy188III TCNNGA 8 cut(s) 542, 704, 914, 1112, 1157, 1255, 1300, 1393
Hpy8I GTNNAC 2 cut(s) 553, 618
HpyAV CCTTC 4 cut(s) 258, 270, 700, 809
HpyCH4III ACNGT 3 cut(s) 47, 217, 651
HpyCH4V TGCA 5 cut(s) 362, 384, 884, 895, 1369
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 121, 394, 544, 974, 1363, 1375
HpyF3I CTNAG 6 cut(s) 528, 543, 840, 915, 1206, 1394
HspAI GCGC 4 cut(s) 108, 230, 323, 352
Kpn2I TCCGGA 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 1140
Kzo9I GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
LmnI GCTCC 3 cut(s) 31, 124, 691
Lsp1109I GCAGC 9 cut(s) 211, 214, 346, 670, 750, 856, 934, 1341, 1353
LweI GCATC 2 cut(s) 371, 397
MaeI CTAG 4 cut(s) 771, 1041, 1172, 1319
MaeIII GTNAC 3 cut(s) 573, 1072, 1222
MalI GATC 9 cut(s) 312, 486, 722, 878, 1010, 1142, 1164, 1304, 1430
MboI GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
MboII GAAGA 6 cut(s) 183, 360, 899, 1028, 1115, 1381
MflI RGATCY 4 cut(s) 310, 484, 1008, 1428
MhlI GDGCHC 3 cut(s) 921, 1018, 1248
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 185, 857
MroI TCCGGA 1 cut(s) 703
MseI TTAA 1 cut(s) 1148
MslI CAYNNNNRTG 2 cut(s) 414, 963
MspA1I CMGCKG 1 cut(s) 1408
MspI CCGG 8 cut(s) 64, 79, 132, 143, 297, 343, 704, 1070
MspR9I CCNGG 8 cut(s) 64, 79, 80, 143, 343, 445, 665, 1313
MvaI CCWGG 3 cut(s) 445, 665, 1313
MvnI CGCG 2 cut(s) 15, 108
MwoI GCNNNNNNNGC 7 cut(s) 116, 121, 394, 544, 974, 1363, 1375
NciI CCSGG 5 cut(s) 64, 79, 80, 143, 343
NdeII GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
NlaIV GGNNCC 4 cut(s) 27, 76, 147, 312
NmuCI GTSAC 2 cut(s) 573, 1072
NspI RCATGY 1 cut(s) 826
NspV TTCGAA 1 cut(s) 859
PcsI WCGNNNNNNNCGW 1 cut(s) 511
PfeI GAWTC 2 cut(s) 793, 1133
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 652
Psp6I CCWGG 3 cut(s) 443, 663, 1311
PspEI GGTNACC 2 cut(s) 1072, 1222
PspGI CCWGG 3 cut(s) 443, 663, 1311
PspN4I GGNNCC 4 cut(s) 27, 76, 147, 312
PspPI GGNCC 3 cut(s) 378, 447, 1315
PstI CTGCAG 2 cut(s) 897, 1371
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 4 cut(s) 310, 484, 1008, 1428
RsaI GTAC 3 cut(s) 517, 533, 1099
RsaNI GTAC 3 cut(s) 516, 532, 1098
RseI CAYNNNNRTG 2 cut(s) 414, 963
SaqAI TTAA 1 cut(s) 1148
Sau3AI GATC 9 cut(s) 310, 484, 720, 876, 1008, 1140, 1162, 1302, 1428
Sau96I GGNCC 3 cut(s) 378, 447, 1315
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 8 cut(s) 64, 79, 80, 143, 343, 445, 665, 1313
SduI GDGCHC 3 cut(s) 921, 1018, 1248
SfaNI GCATC 2 cut(s) 371, 397
SfcI CTRYAG 2 cut(s) 893, 1367
SfuI TTCGAA 1 cut(s) 859
SinI GGWCC 2 cut(s) 378, 1315
SmaI CCCGGG 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 414, 963
SmlI CTYRAG 2 cut(s) 1157, 1241
SmoI CTYRAG 2 cut(s) 1157, 1241
SspMI CTAG 4 cut(s) 771, 1041, 1172, 1319
StyD4I CCNGG 8 cut(s) 62, 77, 78, 141, 341, 443, 663, 1311
StyI CCWWGG 1 cut(s) 746
TaaI ACNGT 3 cut(s) 47, 217, 651
TaqI TCGA 2 cut(s) 505, 859
TaqII GACCGA 1 cut(s) 366
TauI GCSGC 5 cut(s) 54, 172, 235, 1381, 1408
TfiI GAWTC 2 cut(s) 793, 1133
Tru1I TTAA 1 cut(s) 1148
Tru9I TTAA 1 cut(s) 1148
TscAI CASTG 2 cut(s) 505, 1224
TseFI GTSAC 2 cut(s) 573, 1072
TseI GCWGC 9 cut(s) 224, 227, 359, 683, 738, 869, 947, 1354, 1366
Tsp45I GTSAC 2 cut(s) 573, 1072
TspDTI ATGAA 4 cut(s) 183, 1115, 1181, 1190
TspGWI ACGGA 1 cut(s) 980
TspMI CCCGGG 1 cut(s) 78
TspRI CASTG 2 cut(s) 505, 1224
VpaK11BI GGWCC 2 cut(s) 378, 1315
XceI RCATGY 1 cut(s) 826
XmaI CCCGGG 1 cut(s) 78
XspI CTAG 4 cut(s) 771, 1041, 1172, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.