Rh5DG271500

function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001194
Physical Location & Seq
Reverse (-)
33031043 .. 33032947
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG271500.1

Sequence Viewer

Length: 1014 bp
ATGAGTCCAAGGATTAAAGCTTCCTCCAAGGTGAGTAAGAAAAATACCATTGCGCGTACAGTTTGTCGGCGATCACCTTCTGTCACCAAACGTGTTTGTAACCAAAAAGTTAAGTTGTGCTATGAAATCAGCACTTTGAAATGTAACATCATCTGTGAGCGTCCTTTTGAACTAGAGGATGTTGGTGAAGATTTCACTAATATTATTAACAAACGTCAGTGGAATTCCCTGATAGATTATAATGATCCACCAAATGCCACTCTGGTCAAAGAATTCTATACTCGTCTTGCTGAGGATACTGGTCCTGATCAGGATAAAGTTTATGTCAGGAAAAAGTTGGTACCTTTTAACCCTGAGGTTATTCGATGTACTCTCAATCTTCCTCCTTGTAGTTTACCTGACAGCTATGCCACTTTCAAGAAAATGATTGACAGAAAGAAGCAGCACTTGCCTTCTGACCTTCGTGATTCTGGGATCGGTCATGGTGAAATGCCATCATCAAACTATGGATGTCTGACTGATCTCCATAGGACCCTTGCTCAGCTCAGTAGATCATCTATTTGGCCTTCTAGTCAAGTATCATGGCTTTCAAATCGTTTGACCTGTTTAATTTGGCTCATCACTCAAGACGCAGTTGAAATCCCCTTACATGAAATCATTTATGATTGGATCTGTAAAGCAGCCAAGAGCAAGAAGTCATGTTTGGGCTTTCCTTGTCTTATCACCAAAATTGCTCATGATGCAGGAGTTGCTTTCCACGTGCACGATAAGTTTATGAAGATTCCGGAGCCTGTTGACAGTGTCAATAAGGTCCAGAGTGATGCTCATATAAAATTTTCCAACTCAAATCGTTCTTCTAGTAGTGCCCCTGTTGCCTCTTCTGGTCTGCATGATGATGCTTCTTTAACTTCGAATCCAATGTTGTGCGACTTGCAGAGTTCAATTATTGCTGTGGAAAAGGGGATAGCTTGCCTTAAGAATGCTCTCTCATGTTACTCAAGATACCATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.88

Weight (kDa)

9.01

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 71 - 250 7.1e-25 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
Acc65I GGTACC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 340
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 784
AclWI GGATC 3 cut(s) 239, 482, 677
AcsI RAATTY 3 cut(s) 223, 272, 833
AcvI CACGTG 1 cut(s) 760
AfaI GTAC 3 cut(s) 58, 342, 370
AflII CTTAAG 1 cut(s) 974
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 6 cut(s) 139, 170, 418, 591, 638, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 4 cut(s) 20, 405, 544, 968
AluI AGCT 4 cut(s) 20, 405, 544, 968
Alw21I GWGCWC 1 cut(s) 765
Alw44I GTGCAC 1 cut(s) 761
AlwI GGATC 3 cut(s) 239, 482, 677
Aor13HI TCCGGA 1 cut(s) 784
AoxI GGCC 1 cut(s) 563
ApaLI GTGCAC 1 cut(s) 761
ApeKI GCWGC 2 cut(s) 442, 680
ApoI RAATTY 3 cut(s) 223, 272, 833
Asp718I GGTACC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 302, 531, 811
AsuHPI GGTGA 6 cut(s) 43, 66, 76, 197, 497, 715
AsuII TTCGAA 1 cut(s) 911
AvaII GGWCC 3 cut(s) 302, 531, 811
AxyI CCTNAGG 1 cut(s) 354
BaeGI GKGCMC 2 cut(s) 765, 868
BanI GGYRCC 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 760
Bbv12I GWGCWC 1 cut(s) 765
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 454, 692
BccI CCATC 1 cut(s) 502
BciVI GTATCC 1 cut(s) 289
BclI TGATCA 1 cut(s) 307
BfaI CTAG 3 cut(s) 173, 570, 858
BfrI CTTAAG 1 cut(s) 974
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 2 cut(s) 443, 681
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 2 cut(s) 444, 682
Bme18I GGWCC 3 cut(s) 302, 531, 811
BmgT120I GGNCC 3 cut(s) 302, 531, 811
BmiI GGNNCC 3 cut(s) 342, 533, 789
BmsI GCATC 3 cut(s) 730, 811, 886
BplI GAGNNNNNCTC 2 cut(s) 808, 840
Bpu10I CCTNAGC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 609, 982
BsaAI YACGTR 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 8, 27
BsaWI WCCGGW 1 cut(s) 784
Bse1I ACTGG 1 cut(s) 304
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 784
BseDI CCNNGG 2 cut(s) 8, 27
BseGI GGATG 2 cut(s) 184, 515
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 4 cut(s) 282, 345, 554, 559
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 2 cut(s) 765, 868
BseXI GCAGC 2 cut(s) 454, 692
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 565
BshNI GGYRCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 1 cut(s) 785
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 1 cut(s) 565
Bsp119I TTCGAA 1 cut(s) 911
Bsp1286I GDGCHC 2 cut(s) 765, 868
Bsp13I TCCGGA 1 cut(s) 784
Bsp143I GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
Bsp1720I GCTNAGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 4 cut(s) 283, 346, 553, 558
BspEI TCCGGA 1 cut(s) 784
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 342, 533, 789
BspPI GGATC 3 cut(s) 239, 482, 677
BspT104I TTCGAA 1 cut(s) 911
BspT107I GGYRCC 1 cut(s) 340
BspTI CTTAAG 1 cut(s) 974
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 8, 27
BssMI GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
BssT1I CCWWGG 2 cut(s) 8, 27
Bst4CI ACNGT 2 cut(s) 61, 800
Bst6I CTCTTC 1 cut(s) 883
BstAFI CTTAAG 1 cut(s) 974
BstAPI GCANNNNNTGC 2 cut(s) 448, 749
BstBAI YACGTR 1 cut(s) 760
BstBI TTCGAA 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 970
BstDEI CTNAG 4 cut(s) 291, 354, 540, 545
BstF5I GGATG 2 cut(s) 184, 515
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 7 cut(s) 74, 247, 310, 477, 523, 554, 672
BstMBI GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
BstMWI GCNNNNNNNGC 4 cut(s) 448, 740, 749, 872
BstSLI GKGCMC 2 cut(s) 765, 868
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 454, 692
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
Bsu36I CCTNAGG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 565
BtsCI GGATG 2 cut(s) 184, 515
BtsIMutI CAGTG 2 cut(s) 224, 805
Cac8I GCNNGC 1 cut(s) 970
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 302, 531, 811
CseI GACGC 2 cut(s) 149, 638
Csp6I GTAC 3 cut(s) 57, 341, 369
CviAII CATG 7 cut(s) 482, 582, 650, 699, 737, 890, 990
CviQI GTAC 3 cut(s) 57, 341, 369
DdeI CTNAG 4 cut(s) 291, 354, 540, 545
DpnI GATC 7 cut(s) 73, 246, 309, 476, 522, 553, 671
DpnII GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
Eam1104I CTCTTC 1 cut(s) 883
EarI CTCTTC 1 cut(s) 883
Eco130I CCWWGG 2 cut(s) 8, 27
Eco47I GGWCC 3 cut(s) 302, 531, 811
Eco72I CACGTG 1 cut(s) 760
Eco81I CCTNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 531
EcoRI GAATTC 2 cut(s) 223, 272
EcoT14I CCWWGG 2 cut(s) 8, 27
ErhI CCWWGG 2 cut(s) 8, 27
FaeI CATG 7 cut(s) 485, 585, 653, 702, 740, 893, 993
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 7 cut(s) 481, 581, 649, 698, 736, 889, 989
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 443, 681
FokI GGATG 2 cut(s) 191, 522
Fsp4HI GCNGC 2 cut(s) 443, 681
FspBI CTAG 3 cut(s) 173, 570, 858
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 443, 681
HaeIII GGCC 1 cut(s) 565
HapII CCGG 1 cut(s) 785
HgaI GACGC 2 cut(s) 149, 638
HhaI GCGC 1 cut(s) 55
Hin1II CATG 7 cut(s) 485, 585, 653, 702, 740, 893, 993
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 4 cut(s) 4, 467, 781, 913
HpaII CCGG 1 cut(s) 785
HphI GGTGA 6 cut(s) 43, 66, 76, 197, 497, 715
Hpy166II GTNNAC 3 cut(s) 395, 763, 796
Hpy188I TCNGA 2 cut(s) 457, 516
Hpy8I GTNNAC 3 cut(s) 395, 763, 796
HpyAV CCTTC 4 cut(s) 87, 462, 470, 576
HpyCH4III ACNGT 2 cut(s) 61, 800
HpyCH4IV ACGT 3 cut(s) 91, 214, 759
HpyCH4V TGCA 4 cut(s) 743, 763, 889, 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 448, 740, 749, 872
HpyF3I CTNAG 4 cut(s) 291, 354, 540, 545
HpySE526I ACGT 3 cut(s) 91, 214, 759
Hsp92II CATG 7 cut(s) 485, 585, 653, 702, 740, 893, 993
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 784
KpnI GGTACC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
LmnI GCTCC 1 cut(s) 787
Lsp1109I GCAGC 2 cut(s) 454, 692
LweI GCATC 3 cut(s) 730, 811, 886
MaeI CTAG 3 cut(s) 173, 570, 858
MaeII ACGT 3 cut(s) 91, 214, 759
MaeIII GTNAC 4 cut(s) 82, 98, 143, 992
MalI GATC 7 cut(s) 73, 246, 309, 476, 522, 553, 671
MboI GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
MboII GAAGA 5 cut(s) 200, 371, 790, 846, 870
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 2 cut(s) 765, 868
MluCI AATT 6 cut(s) 223, 272, 609, 729, 833, 942
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 864
MnlI CCTC 6 cut(s) 34, 169, 286, 349, 393, 886
MroI TCCGGA 1 cut(s) 784
MseI TTAA 7 cut(s) 15, 111, 207, 348, 608, 905, 975
MslI CAYNNNNRTG 1 cut(s) 894
MspCI CTTAAG 1 cut(s) 974
MspI CCGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 448, 740, 749, 872
NdeII GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
NlaIII CATG 7 cut(s) 485, 585, 653, 702, 740, 893, 993
NlaIV GGNNCC 3 cut(s) 342, 533, 789
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 911
PagI TCATGA 1 cut(s) 736
PctI GAATGC 1 cut(s) 985
PfeI GAWTC 3 cut(s) 467, 781, 913
PflFI GACNNNGTC 1 cut(s) 800
PkrI GCNGC 2 cut(s) 444, 682
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 531
PsiI TTATAA 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 531
PspCI CACGTG 1 cut(s) 760
PspN4I GGNNCC 3 cut(s) 342, 533, 789
PspPI GGNCC 3 cut(s) 302, 531, 811
PspPPI RGGWCCY 1 cut(s) 531
PsuI RGATCY 1 cut(s) 669
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 3 cut(s) 58, 342, 370
RsaNI GTAC 3 cut(s) 57, 341, 369
RseI CAYNNNNRTG 1 cut(s) 894
SaqAI TTAA 7 cut(s) 15, 111, 207, 348, 608, 905, 975
SatI GCNGC 2 cut(s) 443, 681
Sau3AI GATC 7 cut(s) 71, 244, 307, 474, 520, 551, 669
Sau96I GGNCC 3 cut(s) 302, 531, 811
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 765, 868
SfaNI GCATC 3 cut(s) 730, 811, 886
SfuI TTCGAA 1 cut(s) 911
SinI GGWCC 3 cut(s) 302, 531, 811
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 3 cut(s) 624, 974, 997
SmoI CTYRAG 3 cut(s) 624, 974, 997
Sse9I AATT 6 cut(s) 223, 272, 609, 729, 833, 942
SspI AATATT 1 cut(s) 202
SspMI CTAG 3 cut(s) 173, 570, 858
StyI CCWWGG 2 cut(s) 8, 27
TaaI ACNGT 2 cut(s) 61, 800
TaiI ACGT 3 cut(s) 94, 217, 762
TaqI TCGA 2 cut(s) 364, 911
TaqII GACCGA 1 cut(s) 467
TasI AATT 6 cut(s) 223, 272, 609, 729, 833, 942
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 3 cut(s) 467, 781, 913
Tru1I TTAA 7 cut(s) 15, 111, 207, 348, 608, 905, 975
Tru9I TTAA 7 cut(s) 15, 111, 207, 348, 608, 905, 975
TscAI CASTG 2 cut(s) 224, 805
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 442, 680
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 138, 666, 791
TspRI CASTG 2 cut(s) 224, 805
Tth111I GACNNNGTC 1 cut(s) 800
Vha464I CTTAAG 1 cut(s) 974
VneI GTGCAC 1 cut(s) 761
VpaK11BI GGWCC 3 cut(s) 302, 531, 811
XapI RAATTY 3 cut(s) 223, 272, 833
XspI CTAG 3 cut(s) 173, 570, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.