Rw4G006730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001194
Physical Location & Seq
Forward (+)
14125391 .. 14125705
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006730.1

Sequence Viewer

Length: 315 bp
ATGTACAAAGCCATCCGGAAGGCAGCTGTTGAAGGTCGTCGTCACAAGAAGGATGCCTTAGTTTTTCCCTCTGTAATCACTGCTGTTTGCAAAGCCAAAGGTGTTCGATTTGCTGATGATGATGAATATAGTCCAGCCTTGAAGGTCTTTTCCCGAAGTTCCCTTCATCGGAGTACTAGTCACAGCAAGACCAAAGGCGCTTCAGTAGAGACCACCGCTATCACTCGTGCATTTCAGGAGCAGTTTGCTCTTGTTTATCAGCGTTTGGATCTTATTGAGGGCAACATTCGTGCTCTTCGGAATGCTTGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

10.01

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 15
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 5, 175
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 32, 142
AhlI ACTAGT 1 cut(s) 176
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 200
BauI CACGAG 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmcAI AGTACT 1 cut(s) 175
BmsI GCATC 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 15
BseGI GGATG 2 cut(s) 12, 58
BseLI CCNNNNNNNGG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 295
Bsp13I TCCGGA 1 cut(s) 15
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 15
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 1 cut(s) 268
BssSI CACGAG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 12, 58
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 2 cut(s) 12, 58
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 4, 174
CviJI RGCY 4 cut(s) 11, 26, 95, 137
CviKI_1 RGCY 4 cut(s) 11, 26, 95, 137
CviQI GTAC 2 cut(s) 4, 174
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 186
FaiI YATR 1 cut(s) 129
FalI AAGNNNNNCTT 2 cut(s) 41, 73
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 16
HhaI GCGC 1 cut(s) 200
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HpaII CCGG 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 171, 300
Hpy188III TCNNGA 3 cut(s) 16, 153, 236
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 5 cut(s) 13, 26, 43, 136, 173
HpyCH4V TGCA 3 cut(s) 90, 230, 309
HpyF3I CTNAG 1 cut(s) 58
HspAI GCGC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 15
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 29, 147, 221
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 41, 179
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 295
MnlI CCTC 2 cut(s) 79, 271
MroI TCCGGA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 307
NdeII GATC 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 41, 179
PciSI GCTCTTC 1 cut(s) 300
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 5, 175
RsaNI GTAC 2 cut(s) 4, 174
SapI GCTCTTC 1 cut(s) 300
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 175
SduI GDGCHC 1 cut(s) 295
SetI ASST 5 cut(s) 28, 37, 103, 147, 314
SfaNI GCATC 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 176
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 177
TaqI TCGA 1 cut(s) 106
TatI WGTACW 2 cut(s) 3, 173
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 2 cut(s) 41, 179
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 41, 179
TspDTI ATGAA 2 cut(s) 138, 155
TspRI CASTG 1 cut(s) 85
XspI CTAG 1 cut(s) 177
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.