Rh6AG234900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001194
Physical Location & Seq
Forward (+)
41888211 .. 41888909
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG234900.1

Sequence Viewer

Length: 699 bp
ATGGATGAGTTGTATTGGAATAAGGAGGCAGTCAATCCATCTGACACCTATGCTACTCTTGGTCATTTGTCTCAGCTCACCAAGCTTGTATATCATTTTGTGACCAGTTACTTGTGGCCGTCTTCTCAGTCTTCTCAACTCTCCATCAGACCGGGTGCTTTAACTGTTGCTATTAAGACTAGAAAGTTTTCTTCCATTCCTCTTCATCAATATGTCTTTGATAGAGTGAAGGAAGCTGCTTTAACCAAGGGAACCAGTACCTCAGCCTTCCTTATTTTTCCATGCCTGATCACTCAAATCTGCAATGCAAGCAATGTTCCCACCTCTCATGATGATGATTGGGCTGAGGCCCCCTTGTATAATCTGCATTCTCTGTCTCGCAGTGATGGGCAAAGCTCTCTTCCATGCCCCTCCATCAATGATGAAGCTTGGTACACGCTATTGGATCAGCGTTTTTCTCGTCTTGAAGGGTCGTTTGCTGCACTTCAGTCCTCCATCAAAGAGACCCTGGCTCCGTTTTCTCGTCTCATTGATGCTCATGAGCAGGCCATTCTGAATGCCGTCTCTGCTGCTGCTCCTTCAGCCCATGTTGCTTCTGATAGTGAAGAAACTGAATCTCCATCCTCCTTTGACCGTGTCCACAGTGAGCGTCGCTCCAAGCGCTTTGCTGACCGTCCTGCTGCTCGTCCCCAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.73

Weight (kDa)

6.05

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 21 - 107 6.6e-10 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 470, 564
AfaI GTAC 2 cut(s) 259, 434
AfeI AGCGCT 1 cut(s) 662
AgsI TTSAA 1 cut(s) 467
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 76, 85, 236, 396, 428
AluI AGCT 5 cut(s) 76, 85, 236, 396, 428
Alw26I GTCTC 5 cut(s) 75, 381, 497, 530, 568
AlwI GGATC 1 cut(s) 453
Aor51HI AGCGCT 1 cut(s) 662
AoxI GGCC 3 cut(s) 116, 348, 546
ApeKI GCWGC 5 cut(s) 236, 479, 569, 572, 680
Asp700I GAANNNNTTC 1 cut(s) 187
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 70
BbsI GAAGAC 2 cut(s) 114, 123
BbvCI CCTCAGC 2 cut(s) 262, 345
BbvI GCAGC 5 cut(s) 223, 466, 556, 559, 667
BccI CCATC 6 cut(s) 46, 152, 380, 422, 503, 628
BceAI ACGGC 2 cut(s) 103, 545
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 1 cut(s) 288
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 5 cut(s) 75, 381, 497, 530, 568
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 664
BisI GCNGC 5 cut(s) 237, 480, 570, 573, 681
BlsI GCNGC 5 cut(s) 238, 481, 571, 574, 682
Bme1390I CCNGG 2 cut(s) 153, 509
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 3 cut(s) 253, 351, 513
BmrFI CCNGG 2 cut(s) 153, 509
BmsI GCATC 1 cut(s) 523
BpiI GAAGAC 2 cut(s) 114, 123
BplI GAGNNNNNCTC 2 cut(s) 638, 670
Bpu10I CCTNAGC 2 cut(s) 262, 345
BpuMI CCSGG 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 246, 507
BsaXI ACNNNNNCTCC 4 cut(s) 496, 526, 601, 631
Bse1I ACTGG 2 cut(s) 105, 255
Bse3DI GCAATG 2 cut(s) 310, 319
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 246, 507
BseGI GGATG 2 cut(s) 10, 620
BseMI GCAATG 2 cut(s) 310, 319
BseMII CTCAG 4 cut(s) 86, 140, 276, 336
BseNI ACTGG 2 cut(s) 105, 255
BseXI GCAGC 5 cut(s) 223, 466, 556, 559, 667
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 3 cut(s) 118, 350, 548
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 672
BsmAI GTCTC 5 cut(s) 75, 381, 497, 530, 568
BsmBI CGTCTC 2 cut(s) 530, 568
BsmFI GGGAC 1 cut(s) 672
BsmI GAATGC 2 cut(s) 367, 562
BsnI GGCC 3 cut(s) 118, 350, 548
Bso31I GGTCTC 1 cut(s) 497
Bsp143I GATC 2 cut(s) 288, 445
BspANI GGCC 3 cut(s) 118, 350, 548
BspCNI CTCAG 4 cut(s) 85, 139, 275, 337
BspHI TCATGA 2 cut(s) 328, 538
BspLI GGNNCC 3 cut(s) 253, 351, 513
BspPI GGATC 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 2 cut(s) 310, 319
BsrI ACTGG 2 cut(s) 105, 255
BssECI CCNNGG 2 cut(s) 246, 507
BssMI GATC 2 cut(s) 288, 445
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 5 cut(s) 166, 635, 644, 674, 696
Bst6I CTCTTC 2 cut(s) 207, 405
BstC8I GCNNGC 2 cut(s) 310, 546
BstDEI CTNAG 4 cut(s) 72, 126, 262, 345
BstF5I GGATG 2 cut(s) 10, 620
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 2 cut(s) 291, 448
BstMAI GTCTC 5 cut(s) 75, 381, 497, 530, 568
BstMBI GATC 2 cut(s) 288, 445
BstMWI GCNNNNNNNGC 6 cut(s) 82, 309, 566, 581, 590, 660
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 151, 507
BstV1I GCAGC 5 cut(s) 223, 466, 556, 559, 667
BstV2I GAAGAC 2 cut(s) 114, 123
BsuRI GGCC 3 cut(s) 118, 350, 548
BtsCI GGATG 2 cut(s) 10, 620
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 388, 649
Cac8I GCNNGC 2 cut(s) 310, 546
CciI TCATGA 2 cut(s) 328, 538
CfoI GCGC 1 cut(s) 663
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 638
Csp6I GTAC 2 cut(s) 258, 433
CviAII CATG 5 cut(s) 282, 329, 405, 539, 587
CviQI GTAC 2 cut(s) 258, 433
DdeI CTNAG 4 cut(s) 72, 126, 262, 345
DpnI GATC 2 cut(s) 290, 447
DpnII GATC 2 cut(s) 288, 445
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 207, 405
EarI CTCTTC 2 cut(s) 207, 405
Eco130I CCWWGG 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 497
Eco47III AGCGCT 1 cut(s) 662
Eco57I CTGAAG 2 cut(s) 470, 564
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 2 cut(s) 530, 568
FaeI CATG 5 cut(s) 285, 332, 408, 542, 590
FaiI YATR 9 cut(s) 51, 91, 213, 283, 330, 360, 406, 540, 588
FaqI GGGAC 1 cut(s) 672
FatI CATG 5 cut(s) 281, 328, 404, 538, 586
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 237, 480, 570, 573, 681
FokI GGATG 2 cut(s) 17, 607
Fsp4HI GCNGC 5 cut(s) 237, 480, 570, 573, 681
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 662
GluI GCNGC 5 cut(s) 237, 480, 570, 573, 681
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 3 cut(s) 118, 350, 548
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 663
Hin1II CATG 5 cut(s) 285, 332, 408, 542, 590
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HindIII AAGCTT 2 cut(s) 83, 426
HinfI GANTC 1 cut(s) 614
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 435, 640
Hpy188I TCNGA 4 cut(s) 43, 149, 555, 598
Hpy188III TCNNGA 3 cut(s) 329, 464, 539
Hpy8I GTNNAC 2 cut(s) 435, 640
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 4 cut(s) 223, 277, 461, 588
HpyCH4III ACNGT 5 cut(s) 166, 635, 644, 674, 696
HpyCH4V TGCA 4 cut(s) 303, 308, 367, 482
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 309, 566, 581, 590, 660
HpyF3I CTNAG 4 cut(s) 72, 126, 262, 345
Hsp92II CATG 5 cut(s) 285, 332, 408, 542, 590
HspAI GCGC 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 288, 445
LmnI GCTCC 3 cut(s) 517, 580, 659
LpnPI CCDG 8 cut(s) 118, 165, 268, 299, 494, 521, 530, 690
Lsp1109I GCAGC 5 cut(s) 223, 466, 556, 559, 667
LweI GCATC 1 cut(s) 523
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 100, 107
MalI GATC 2 cut(s) 290, 447
MboI GATC 2 cut(s) 288, 445
MboII GAAGA 6 cut(s) 114, 123, 183, 194, 392, 617
MnlI CCTC 8 cut(s) 19, 210, 271, 334, 340, 421, 502, 634
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 3 cut(s) 161, 174, 242
MslI CAYNNNNRTG 2 cut(s) 210, 333
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 153, 509
Mva1269I GAATGC 2 cut(s) 367, 562
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 6 cut(s) 82, 309, 566, 581, 590, 660
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 288, 445
NlaIII CATG 5 cut(s) 285, 332, 408, 542, 590
NlaIV GGNNCC 3 cut(s) 253, 351, 513
NmuCI GTSAC 1 cut(s) 100
PagI TCATGA 2 cut(s) 328, 538
PctI GAATGC 2 cut(s) 367, 562
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 614
PflFI GACNNNGTC 1 cut(s) 635
PkrI GCNGC 5 cut(s) 238, 481, 571, 574, 682
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 253, 351, 513
PspPI GGNCC 1 cut(s) 349
PsyI GACNNNGTC 1 cut(s) 635
RsaI GTAC 2 cut(s) 259, 434
RsaNI GTAC 2 cut(s) 258, 433
RseI CAYNNNNRTG 2 cut(s) 210, 333
SaqAI TTAA 3 cut(s) 161, 174, 242
SatI GCNGC 5 cut(s) 237, 480, 570, 573, 681
Sau3AI GATC 2 cut(s) 288, 445
Sau96I GGNCC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 153, 509
SetI ASST 8 cut(s) 50, 78, 87, 238, 263, 326, 398, 430
SfaNI GCATC 1 cut(s) 523
SmiMI CAYNNNNRTG 2 cut(s) 210, 333
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 151, 507
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 5 cut(s) 166, 635, 644, 674, 696
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 3 cut(s) 161, 174, 242
Tru9I TTAA 3 cut(s) 161, 174, 242
TscAI CASTG 2 cut(s) 388, 649
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 5 cut(s) 236, 479, 569, 572, 680
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 194, 438
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 2 cut(s) 388, 649
Tth111I GACNNNGTC 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.