Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Forward (+)

3985856 .. 3986194

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG032200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTCGCACTAGCGGTGGTAAGGCTCCTCCATCTGGTTCTCGCCGTGGAGGCACGACTCCCCGGCCGGCTGCTTCACGGGCCTCCTCTCGCTTGCTCAATCTCCGCGCCTCGCAAGCTCCGCCCACTTCCGGTTCCTCACCGGTTCAAATTGTCTCTCCACCTCCGGCATCTCCTTCTGGTTCACCCTCCGCCTCCTCACCTCACTCCTTGTCCTCCTTGTCTGGTTCCAGCTCATATTCCACATTTGCGCCTCCTCCACCATCTCCCCCTCGTAAGCTCAAGGCTGCACCGTCTCCACCTCAGTCCTACAAGCGTCCCAAGCATGTTCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.24

Weight (kDa)

12.0

Isoelectric Point (pI)

109.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	4 cut(s)	15, 106, 122, 192
AcoI	YGGCCR	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	35, 131
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	3 cut(s)	119, 234, 280
AluI	AGCT	3 cut(s)	119, 234, 280
Alw26I	GTCTC	2 cut(s)	160, 300
AoxI	GGCC	2 cut(s)	65, 81
ApeKI	GCWGC	2 cut(s)	71, 287
AsiGI	ACCGGT	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	110, 253
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	132, 177, 192
BbvI	GCAGC	2 cut(s)	58, 274
BccI	CCATC	2 cut(s)	40, 271
BceAI	ACGGC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	160, 300
BfaI	CTAG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	72, 288
BlsI	GCNGC	2 cut(s)	73, 289
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	3 cut(s)	27, 136, 229
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	46, 62
BsaWI	WCCGGW	2 cut(s)	131, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 131
Bse118I	RCCGGY	2 cut(s)	67, 142
BseDI	CCNNGG	2 cut(s)	46, 62
BseLI	CCNNNNNNNGG	2 cut(s)	35, 131
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	4 cut(s)	18, 76, 187, 246
BseX3I	CGGCCG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	58, 274
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	67, 83
BshTI	ACCGGT	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	68
BsiSI	CCGG	5 cut(s)	64, 68, 132, 143, 167
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	35, 131
BsmAI	GTCTC	2 cut(s)	160, 300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	67, 83
BspACI	CCGC	4 cut(s)	15, 106, 122, 192
BspANI	GGCC	2 cut(s)	67, 83
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	27, 136, 229
BsrFI	RCCGGY	2 cut(s)	67, 142
BssAI	RCCGGY	2 cut(s)	67, 142
BssECI	CCNNGG	2 cut(s)	46, 62
Bst4CI	ACNGT	1 cut(s)	294
BstC8I	GCNNGC	4 cut(s)	7, 69, 95, 117
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	110, 253
BstMAI	GTCTC	2 cut(s)	160, 300
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 80, 116, 121, 322
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	58, 274
BstZI	CGGCCG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	67, 83
BtgI	CCRYGG	1 cut(s)	46
Cac8I	GCNNGC	4 cut(s)	7, 69, 95, 117
CfoI	GCGC	2 cut(s)	110, 253
Cfr10I	RCCGGY	2 cut(s)	67, 142
Cfr13I	GGNCC	1 cut(s)	81
CseI	GACGC	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	9 cut(s)	5, 26, 67, 71, 83, 119, 234, 280, 287
CviKI_1	RGCY	9 cut(s)	5, 26, 67, 71, 83, 119, 234, 280, 287
DdeI	CTNAG	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	65
EagI	CGGCCG	1 cut(s)	65
EciI	GGCGGA	2 cut(s)	111, 181
EclXI	CGGCCG	1 cut(s)	65
Eco52I	CGGCCG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	329
FaiI	YATR	2 cut(s)	238, 327
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	72, 288
Fsp4HI	GCNGC	2 cut(s)	72, 288
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	109, 252
GluI	GCNGC	2 cut(s)	72, 288
HaeIII	GGCC	2 cut(s)	67, 83
HapII	CCGG	5 cut(s)	64, 68, 132, 143, 167
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	110, 253
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	2 cut(s)	108, 251
HinP1I	GCGC	2 cut(s)	108, 251
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	5 cut(s)	64, 68, 132, 143, 167
HphI	GGTGA	3 cut(s)	132, 177, 192
Hpy166II	GTNNAC	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 80, 116, 121, 322
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	2 cut(s)	108, 251
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	31, 124
LpnPI	CCDG	9 cut(s)	21, 77, 81, 145, 156, 165, 180, 210, 244
Lsp1109I	GCAGC	2 cut(s)	58, 274
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	12
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	67
MspI	CCGG	5 cut(s)	64, 68, 132, 143, 167
MspR9I	CCNGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	51, 80, 116, 121, 322
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	64
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	3 cut(s)	27, 136, 229
NspI	RCATGY	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	69
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	73, 289
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	27, 136, 229
PspPI	GGNCC	1 cut(s)	81
SatI	GCNGC	2 cut(s)	72, 288
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	6 cut(s)	121, 166, 205, 236, 282, 304
SfaNI	GCATC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	4 cut(s)	15, 106, 122, 192
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	294
TasI	AATT	1 cut(s)	150
TseI	GCWGC	2 cut(s)	71, 287
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.