Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Reverse (-)

4881773 .. 4882840

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCCGTCTTCTCTTCTGTCACTATCAGTAGACCCATTATCTATGAGAAGCCATTTGATTTTAAGAACATGCCTCAAGCAGTTAAGCATTTTGTTGATAGGCTAGGTTGGTCCGGGTTATATGTGGAGTCTTTGGAGCAGACCTTGCTGAAAAAGGAGATCAAGCTCATTGTGGACAAGACAATGCAGGAGGCAATCATTGGTTTTAGGGACTATGTTGGACGTCAGTTCTACAACTTTAAGAAGGAGATGCCTGAGATCTTAAGGGAGTTTGAGCGCTGCAGAGATGAGGATGCCTCTGGTTCTTCCACTGCTTCTTCTCAGGATACGCGTGCCTCCTCTGATCCTGATGATAAGGAGAGTGAGAGTGATGATGATGTGATCCGCAGGGAGCCCAGTGATGATGAGGATGCTTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.15

Weight (kDa)

4.63

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	1 cut(s)	331
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	338, 376
AcyI	GRCGYC	1 cut(s)	223
AfeI	AGCGCT	1 cut(s)	278
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	329
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	2 cut(s)	338, 376
Aor51HI	AGCGCT	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	3 cut(s)	240, 283, 400
BmuI	ACTGGG	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	298, 415
BseMII	CTCAG	2 cut(s)	246, 335
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	159, 258, 343, 381
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	247, 334
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	2 cut(s)	338, 376
BspTI	CTTAAG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	396
BssMI	GATC	4 cut(s)	159, 258, 343, 381
BssNI	GRCGYC	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	255, 321, 420
BstF5I	GGATG	2 cut(s)	298, 415
BstFNI	CGCG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	162, 261, 346, 384
BstMBI	GATC	4 cut(s)	159, 258, 343, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	298, 415
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	309, 403
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	111
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	52, 103, 166, 394
CviKI_1	RGCY	4 cut(s)	52, 103, 166, 394
DdeI	CTNAG	3 cut(s)	255, 321, 420
DpnI	GATC	4 cut(s)	161, 260, 345, 383
DpnII	GATC	4 cut(s)	159, 258, 343, 381
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	111
Eco47III	AGCGCT	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	396
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	45, 71, 121, 123, 216
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	32, 175
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	323, 347
Hpy8I	GTNNAC	2 cut(s)	32, 175
HpyAV	CCTTC	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	187, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	3 cut(s)	255, 321, 420
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	159, 258, 343, 381
LmnI	GCTCC	2 cut(s)	136, 391
LpnPI	CCDG	8 cut(s)	127, 173, 267, 285, 308, 360, 373, 409
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	3 cut(s)	240, 283, 400
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	4 cut(s)	161, 260, 345, 383
MboI	GATC	4 cut(s)	159, 258, 343, 381
MboII	GAAGA	3 cut(s)	6, 297, 309
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	396
MluI	ACGCGT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	7 cut(s)	84, 184, 283, 307, 346, 349, 400
MseI	TTAA	4 cut(s)	63, 84, 240, 263
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	4 cut(s)	159, 258, 343, 381
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	63, 84, 240, 263
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	4 cut(s)	159, 258, 343, 381
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	4 cut(s)	109, 146, 168, 226
SfaNI	GCATC	3 cut(s)	240, 283, 400
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	75, 262
SmoI	CTYRAG	2 cut(s)	75, 262
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	226
Tru1I	TTAA	4 cut(s)	63, 84, 240, 263
Tru9I	TTAA	4 cut(s)	63, 84, 240, 263
TscAI	CASTG	2 cut(s)	316, 403
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	2 cut(s)	316, 403
Vha464I	CTTAAG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	111
XceI	RCATGY	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.