Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Forward (+)

80569533 .. 80570923

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG575200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTCCGCACCAAAAATCCATCCATCATCGATGCTGCTTCCTCCAAACCGGAGTCCCTCATGCGCCGCTCCCAGCGCCTCAACCGGATTGGACCGGATACTGGGCCACCTACCTCTGTTGCTGCGCCTCACATCATTGAGACTCCTCCTTCAAGTCCACGAGGTTCTCACTCCGCCTCCGCAGCGTCGTCGCACTCTTCCTATGCTGCTCTCTCAAAGTCTCCGTCCCCGTCAGCCCCATCTGCTCCGGTCTCTCCATCCGCGAACCGGGCCTTATCGTCTGTACCTCTTTTGCCCAGAGCTCCTGATCCCAAGCGCCGCCGTCTGCATGACTCTTCCGCCGGTCCTTCCAAGTCCACTCTCACTTCTCATGGGGTTGCCAGCAAGAAACTCAAGGTTGCTACTTCTGCAAAATCCACTAGGGCTGCATCGAAATCCACACTCCTTCGGGTTCTTGAGAGTCGGTTGGGCAGTCTTGCCGCCACCATTGGGGCTCGGTTTGATCGTGTTGACCAGACTCTTCAGCAGCTTCTGTCCTCCCGACCCCCAAGTCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

19.39

Weight (kDa)

11.72

Isoelectric Point (pI)

70.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	549
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	263
AciI	CCGC	8 cut(s)	7, 67, 174, 180, 261, 319, 339, 480
AclWI	GGATC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	3 cut(s)	101, 267, 489
AgsI	TTSAA	1 cut(s)	153
AluBI	AGCT	2 cut(s)	302, 529
AluI	AGCT	2 cut(s)	302, 529
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	134, 225, 256
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	2 cut(s)	104, 270
ApeKI	GCWGC	6 cut(s)	35, 122, 182, 206, 425, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	4 cut(s)	66, 78, 127, 318
AspS9I	GGNCC	5 cut(s)	4, 92, 104, 270, 344
AsuC2I	CCSGG	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	4, 92, 344
BanII	GRGCYC	2 cut(s)	304, 496
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	6 cut(s)	22, 109, 193, 194, 412, 538
BccI	CCATC	4 cut(s)	28, 32, 247, 265
BceAI	ACGGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciVI	GTATCC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	3 cut(s)	134, 225, 256
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	2 cut(s)	79, 319
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	9 cut(s)	36, 67, 123, 183, 207, 319, 426, 480, 527
BlsI	GCNGC	9 cut(s)	37, 68, 124, 184, 208, 320, 427, 481, 528
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	3 cut(s)	4, 92, 344
BmgT120I	GGNCC	5 cut(s)	4, 92, 104, 270, 344
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	22, 437
BmuI	ACTGGG	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	377, 476
BpuMI	CCSGG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	256
BsaWI	WCCGGW	4 cut(s)	49, 84, 94, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 267, 489
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	30
BseGI	GGATG	2 cut(s)	20, 257
BseLI	CCNNNNNNNGG	3 cut(s)	101, 267, 489
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	6 cut(s)	22, 109, 193, 194, 412, 538
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	106, 272
BshVI	ATCGAT	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	6 cut(s)	50, 85, 95, 248, 268, 342
BslFI	GGGAC	2 cut(s)	40, 211
BslI	CCNNNNNNNGG	3 cut(s)	101, 267, 489
BsmAI	GTCTC	3 cut(s)	134, 225, 256
BsmFI	GGGAC	2 cut(s)	40, 211
BsnI	GGCC	2 cut(s)	106, 272
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	304, 496
Bsp143I	GATC	2 cut(s)	307, 502
BspACI	CCGC	8 cut(s)	7, 67, 174, 180, 261, 319, 339, 480
BspANI	GGCC	2 cut(s)	106, 272
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	263
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	341
BssMI	GATC	2 cut(s)	307, 502
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst6I	CTCTTC	3 cut(s)	202, 340, 525
BstC8I	GCNNGC	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	20, 257
BstFNI	CGCG	1 cut(s)	263
BstH2I	RGCGCY	2 cut(s)	79, 319
BstHHI	GCGC	4 cut(s)	66, 78, 127, 318
BstKTI	GATC	2 cut(s)	310, 505
BstMAI	GTCTC	3 cut(s)	134, 225, 256
BstMBI	GATC	2 cut(s)	307, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 182, 242, 269, 407
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	6 cut(s)	22, 109, 193, 194, 412, 538
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	106, 272
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	20, 257
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	4 cut(s)	66, 78, 127, 318
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	5 cut(s)	4, 92, 104, 270, 344
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	3 cut(s)	61, 329, 371
CviJI	RGCY	7 cut(s)	106, 236, 272, 302, 425, 494, 529
CviKI_1	RGCY	7 cut(s)	106, 236, 272, 302, 425, 494, 529
CviQI	GTAC	1 cut(s)	284
DpnI	GATC	2 cut(s)	309, 504
DpnII	GATC	2 cut(s)	307, 502
DrdI	GACNNNNNNGTC	1 cut(s)	549
DseDI	GACNNNNNNGTC	1 cut(s)	549
Eam1104I	CTCTTC	3 cut(s)	202, 340, 525
EarI	CTCTTC	3 cut(s)	202, 340, 525
EciI	GGCGGA	2 cut(s)	163, 328
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	2 cut(s)	304, 496
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	4, 92, 344
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	302
EcoT38I	GRGCYC	2 cut(s)	304, 496
FaeI	CATG	3 cut(s)	64, 332, 374
FaiI	YATR	4 cut(s)	62, 204, 330, 372
FaqI	GGGAC	2 cut(s)	40, 211
FatI	CATG	3 cut(s)	60, 328, 370
Fnu4HI	GCNGC	9 cut(s)	36, 67, 123, 183, 207, 319, 426, 480, 527
FokI	GGATG	2 cut(s)	7, 244
FriOI	GRGCYC	2 cut(s)	304, 496
Fsp4HI	GCNGC	9 cut(s)	36, 67, 123, 183, 207, 319, 426, 480, 527
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	4 cut(s)	65, 77, 126, 317
GluI	GCNGC	9 cut(s)	36, 67, 123, 183, 207, 319, 426, 480, 527
GsaI	CCCAGC	1 cut(s)	76
HaeII	RGCGCY	2 cut(s)	79, 319
HaeIII	GGCC	2 cut(s)	106, 272
HapII	CCGG	6 cut(s)	50, 85, 95, 248, 268, 342
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	4 cut(s)	66, 78, 127, 318
Hin1II	CATG	3 cut(s)	64, 332, 374
Hin6I	GCGC	4 cut(s)	64, 76, 125, 316
HinP1I	GCGC	4 cut(s)	64, 76, 125, 316
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	5 cut(s)	53, 142, 332, 460, 517
HpaII	CCGG	6 cut(s)	50, 85, 95, 248, 268, 342
Hpy166II	GTNNAC	3 cut(s)	158, 357, 511
Hpy188III	TCNNGA	4 cut(s)	305, 455, 540, 554
Hpy8I	GTNNAC	3 cut(s)	158, 357, 511
Hpy99I	CGWCG	2 cut(s)	190, 193
HpyAV	CCTTC	3 cut(s)	159, 357, 455
HpyCH4V	TGCA	3 cut(s)	328, 410, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 182, 242, 269, 407
Hsp92II	CATG	3 cut(s)	64, 332, 374
HspAI	GCGC	4 cut(s)	64, 76, 125, 316
Kzo9I	GATC	2 cut(s)	307, 502
LmnI	GCTCC	3 cut(s)	74, 250, 307
Lsp1109I	GCAGC	6 cut(s)	22, 109, 193, 194, 412, 538
LweI	GCATC	2 cut(s)	22, 437
MaeI	CTAG	1 cut(s)	420
MalI	GATC	2 cut(s)	309, 504
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	2 cut(s)	307, 502
MboII	GAAGA	3 cut(s)	189, 327, 512
MhlI	GDGCHC	2 cut(s)	304, 496
MlyI	GAGTC	5 cut(s)	62, 136, 326, 469, 511
MspI	CCGG	6 cut(s)	50, 85, 95, 248, 268, 342
MspR9I	CCNGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	5 cut(s)	75, 182, 242, 269, 407
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	307, 502
NlaIII	CATG	3 cut(s)	64, 332, 374
PcsI	WCGNNNNNNNCGW	1 cut(s)	502
PkrI	GCNGC	9 cut(s)	37, 68, 124, 184, 208, 320, 427, 481, 528
PleI	GAGTC	5 cut(s)	61, 136, 326, 468, 511
PpsI	GAGTC	5 cut(s)	61, 136, 326, 468, 511
Psp124BI	GAGCTC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	72
PspPI	GGNCC	5 cut(s)	4, 92, 104, 270, 344
PstNI	CAGNNNCTG	1 cut(s)	532
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	304
SatI	GCNGC	9 cut(s)	36, 67, 123, 183, 207, 319, 426, 480, 527
Sau3AI	GATC	2 cut(s)	307, 502
Sau96I	GGNCC	5 cut(s)	4, 92, 104, 270, 344
SchI	GAGTC	5 cut(s)	62, 136, 326, 469, 511
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	304, 496
SetI	ASST	7 cut(s)	112, 116, 166, 289, 304, 399, 531
SfaNI	GCATC	2 cut(s)	22, 437
SinI	GGWCC	3 cut(s)	4, 92, 344
SmlI	CTYRAG	2 cut(s)	392, 455
SmoI	CTYRAG	2 cut(s)	392, 455
SsiI	CCGC	8 cut(s)	7, 67, 174, 180, 261, 319, 339, 480
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	267
TaqI	TCGA	2 cut(s)	30, 431
TauI	GCSGC	3 cut(s)	69, 321, 482
TseI	GCWGC	6 cut(s)	35, 122, 182, 206, 425, 526
TspGWI	ACGGA	1 cut(s)	213
VpaK11BI	GGWCC	3 cut(s)	4, 92, 344
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.