Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Reverse (-)

36986550 .. 36986937

Gene Structure 388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCAAGCAATGTTCCCACCTCTCGTGAAGATGATTGGGCTGAGGCCCCCTTGTATAATCTGCATTCTCTGTCTCGCAGTGATGGGCAAAGCTCTCTTCCTTGCCCCTCCATCAATGATGAAGCTTGTCCTCCATCAAAGAGACCTGGCTCCGTTTTCTCGTCTCGTTGATGCTCATGAGCAGGCCATTCTGAATGCCCTCTCTGTTGCTGCTCCTTCAGCCCCTGCTGCTTCTGATAGTGAAGAAACTGAATCTCCATCCGCCTTAGACTTTGTCCACAGCGAGCGTCGCTCCAAGCGCTTTGCTGACCGCCCTGCTGCTCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.86

Weight (kDa)

7.81

Isoelectric Point (pI)

71.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	261, 310
AcuI	CTGAAG	1 cut(s)	201
AfeI	AGCGCT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	92, 124
AluI	AGCT	2 cut(s)	92, 124
Alw26I	GTCTC	3 cut(s)	77, 135, 167
AlwNI	CAGNNNCTG	1 cut(s)	224
Aor51HI	AGCGCT	1 cut(s)	299
AoxI	GGCC	2 cut(s)	44, 183
ApeKI	GCWGC	3 cut(s)	209, 227, 317
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	196, 214, 304
BccI	CCATC	4 cut(s)	76, 118, 141, 265
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	3 cut(s)	77, 135, 167
BfaI	CTAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	3 cut(s)	210, 228, 318
BlsI	GCNGC	3 cut(s)	211, 229, 319
Bme1390I	CCNGG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	47, 150
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu10I	CCTNAGC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	196, 214, 304
BshFI	GGCC	2 cut(s)	46, 185
BsmAI	GTCTC	3 cut(s)	77, 135, 167
BsmBI	CGTCTC	1 cut(s)	167
BsmI	GAATGC	2 cut(s)	63, 199
BsnI	GGCC	2 cut(s)	46, 185
Bso31I	GGTCTC	1 cut(s)	135
BspACI	CCGC	2 cut(s)	261, 310
BspANI	GGCC	2 cut(s)	46, 185
BspCNI	CTCAG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	47, 150
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	15
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	6, 183, 284
BstDEI	CTNAG	2 cut(s)	41, 265
BstF5I	GGATG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstMAI	GTCTC	3 cut(s)	77, 135, 167
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 227, 288, 297
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	196, 214, 304
BsuRI	GGCC	2 cut(s)	46, 185
BtsCI	GGATG	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	6, 183, 284
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	275
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	7 cut(s)	40, 46, 92, 124, 149, 185, 221
CviKI_1	RGCY	7 cut(s)	40, 46, 92, 124, 149, 185, 221
DdeI	CTNAG	2 cut(s)	41, 265
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	179
FaiI	YATR	2 cut(s)	56, 177
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	210, 228, 318
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	210, 228, 318
FspBI	CTAG	1 cut(s)	328
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	3 cut(s)	210, 228, 318
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	46, 185
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	192, 235
Hpy188III	TCNNGA	2 cut(s)	25, 176
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	4, 63
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 227, 288, 297
HpyF3I	CTNAG	2 cut(s)	41, 265
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	298
LmnI	GCTCC	3 cut(s)	154, 217, 296
LpnPI	CCDG	4 cut(s)	131, 158, 167, 237
Lsp1109I	GCAGC	3 cut(s)	196, 214, 304
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	328
MboII	GAAGA	3 cut(s)	40, 88, 254
MnlI	CCTC	5 cut(s)	30, 36, 117, 140, 209
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	2 cut(s)	63, 199
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	218, 227, 288, 297
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	47, 150
PagI	TCATGA	1 cut(s)	175
PctI	GAATGC	2 cut(s)	63, 199
PfeI	GAWTC	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	211, 229, 319
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	47, 150
PspPI	GGNCC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	272
SatI	GCNGC	3 cut(s)	210, 228, 318
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	4 cut(s)	22, 94, 126, 147
SfaNI	GCATC	1 cut(s)	160
SsiI	CCGC	2 cut(s)	261, 310
SspMI	CTAG	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	251
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	3 cut(s)	209, 227, 317
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.