Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Reverse (-)

17809895 .. 17810200

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTCGAATCAAACATACCATCAAGCGGCCCTCCGCTCCGGCCAGTGGTCCCTCTAGGCGTTCCAATTGCCTCCACCGCCCTAGGGACTCTGGGCCTCCTACCTCCGCGGAGCATCCTCAAGAATTGGCAGATTCCCCATCTTGGCCCACCGCCCAAGCACCGTCATCCCCTTCTGGGTCCGAGCACTCCTCCGCCGCCGCTGCTCTCTCTGATTCCGTTGCCTCTAAGCCCACTCCTGTCTCTCCTTCACCTACTCCGGCTTCGCCACGCCACTCTGTCAGTCCTTCCTCAACTGTTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.3

Weight (kDa)

10.26

Isoelectric Point (pI)

96.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	110
AciI	CCGC	9 cut(s)	28, 36, 79, 108, 110, 153, 195, 198, 201
AcoI	YGGCCR	1 cut(s)	42
AfiI	CCNNNNNNNGG	5 cut(s)	27, 47, 85, 144, 177
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	247
AoxI	GGCC	4 cut(s)	29, 42, 95, 146
ApeKI	GCWGC	1 cut(s)	203
AspA2I	CCTAGG	1 cut(s)	83
AspS9I	GGNCC	5 cut(s)	30, 50, 95, 147, 180
AsuHPI	GGTGA	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	50, 180
AvrII	CCTAGG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	29, 148
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	57, 84
BisI	GCNGC	4 cut(s)	29, 198, 201, 204
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	4 cut(s)	30, 199, 202, 205
Bme18I	GGWCC	2 cut(s)	50, 180
BmgT120I	GGNCC	5 cut(s)	30, 50, 95, 147, 180
BmiI	GGNNCC	2 cut(s)	52, 181
BmsI	GCATC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuEI	CTTGAG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	83, 108
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 47, 85, 144, 177
Bse1I	ACTGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	83, 108
BseGI	GGATG	2 cut(s)	115, 167
BseLI	CCNNNNNNNGG	5 cut(s)	27, 47, 85, 144, 177
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	4 cut(s)	31, 44, 97, 148
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	41, 260
BslFI	GGGAC	2 cut(s)	36, 101
BslI	CCNNNNNNNGG	5 cut(s)	27, 47, 85, 144, 177
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	36, 101
BsnI	GGCC	4 cut(s)	31, 44, 97, 148
Bsp1286I	GDGCHC	1 cut(s)	189
BspACI	CCGC	9 cut(s)	28, 36, 79, 108, 110, 153, 195, 198, 201
BspANI	GGCC	4 cut(s)	31, 44, 97, 148
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	52, 181
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	83, 108
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	165, 298
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	115, 167
BstFNI	CGCG	1 cut(s)	110
BstMAI	GTCTC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 203
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	190
BsuRI	GGCC	4 cut(s)	31, 44, 97, 148
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	115, 167
BtsIMutI	CAGTG	1 cut(s)	52
Cfr13I	GGNCC	5 cut(s)	30, 50, 95, 147, 180
Cfr42I	CCGCGG	1 cut(s)	111
CviJI	RGCY	7 cut(s)	5, 31, 44, 97, 148, 232, 263
CviKI_1	RGCY	7 cut(s)	5, 31, 44, 97, 148, 232, 263
DdeI	CTNAG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	50, 180
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaiI	YATR	1 cut(s)	18
FaqI	GGGAC	2 cut(s)	36, 101
Fnu4HI	GCNGC	4 cut(s)	29, 198, 201, 204
FokI	GGATG	2 cut(s)	102, 154
Fsp4HI	GCNGC	4 cut(s)	29, 198, 201, 204
FspBI	CTAG	2 cut(s)	57, 84
GluI	GCNGC	4 cut(s)	29, 198, 201, 204
HaeIII	GGCC	4 cut(s)	31, 44, 97, 148
HapII	CCGG	2 cut(s)	41, 260
HinfI	GANTC	4 cut(s)	9, 89, 134, 215
HpaII	CCGG	2 cut(s)	41, 260
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	184, 214
Hpy188III	TCNNGA	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	183, 258, 297
HpyCH4III	ACNGT	2 cut(s)	165, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 203
HpyF3I	CTNAG	1 cut(s)	228
KspI	CCGCGG	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	43, 112
LpnPI	CCDG	6 cut(s)	54, 58, 78, 162, 252, 273
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	57, 84
MbiI	CCGCTC	1 cut(s)	38
MfeI	CAATTG	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	67, 125
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	43, 64, 83, 108, 115, 129, 202, 235, 301
MspA1I	CMGCKG	2 cut(s)	110, 203
MspI	CCGG	2 cut(s)	41, 260
MunI	CAATTG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	78, 203
NlaIV	GGNNCC	2 cut(s)	52, 181
PfeI	GAWTC	3 cut(s)	9, 134, 215
PkrI	GCNGC	4 cut(s)	30, 199, 202, 205
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	52, 181
PspPI	GGNCC	5 cut(s)	30, 50, 95, 147, 180
SacII	CCGCGG	1 cut(s)	111
SatI	GCNGC	4 cut(s)	29, 198, 201, 204
Sau96I	GGNCC	5 cut(s)	30, 50, 95, 147, 180
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	2 cut(s)	107, 256
SfaNI	GCATC	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	50, 180
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	67, 125
SsiI	CCGC	9 cut(s)	28, 36, 79, 108, 110, 153, 195, 198, 201
SspMI	CTAG	2 cut(s)	57, 84
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	165, 298
TaqI	TCGA	1 cut(s)	7
TasI	AATT	2 cut(s)	67, 125
TauI	GCSGC	3 cut(s)	31, 200, 203
TfiI	GAWTC	3 cut(s)	9, 134, 215
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	203
TspGWI	ACGGA	2 cut(s)	208, 291
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	50, 180
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	57, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.