Rh7BG431200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001194
Physical Location & Seq
Forward (+)
49339699 .. 49340133
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG431200.1

Sequence Viewer

Length: 435 bp
ATGCTGCCATCATTGACGCTGCACCGTCACGCCGCTGCCATTGTTTATGAAAAGAGGTTCGATTTGGCTTCTCTAGATCGTATGTTTGGCAATATTGTTCGGGTTTTTCAGTGGGTTCCCTTCTTGGAGTCTCTGTCATGTCCTAATTTATCTGTTGTGCGGGAATTTTATGCTAATTGCTCCCCTAACATGCCCTCGAGTGTTGGATTGCTTGACTCTGCCACTTCCTGTGACTACATGGTCAGTGTGCGTGGCATGTCCGTTGCTTTTACTCCTACTGCCATCCGAACCGTCATGCATCTTCCCAGGCCTCGTGAGGATACTCTCATCACTGCTGCTACCTTTCTTGCATCCCTGACTCCAGATCTGTTGGTGGATACCATGTATACTAATCCTCCTGATCAGCCTCCTAAGGAACTTGTCGGCGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.92

Weight (kDa)

5.84

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 36 - 106 4.7e-08 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 386
AciI CCGC 3 cut(s) 33, 160, 426
AcsI RAATTY 1 cut(s) 164
AjnI CCWGG 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 196
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 4 cut(s) 4, 19, 35, 335
ApoI RAATTY 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 411
BauI CACGAG 1 cut(s) 312
BbvI GCAGC 3 cut(s) 6, 22, 322
BccI CCATC 2 cut(s) 16, 290
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 2 cut(s) 313, 370
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 74
BfuI GTATCC 2 cut(s) 313, 370
BglII AGATCT 1 cut(s) 364
BisI GCNGC 5 cut(s) 5, 20, 33, 36, 336
BlsI GCNGC 5 cut(s) 6, 21, 34, 37, 337
Bme1390I CCNGG 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 307, 359
BpmI CTGGAG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 379, 409
Bse21I CCTNAGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 282, 350
BseXI GCAGC 3 cut(s) 6, 22, 322
BsgI GTGCAG 1 cut(s) 5
BshFI GGCC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 196
Bsp143I GATC 3 cut(s) 76, 364, 400
BspACI CCGC 3 cut(s) 33, 160, 426
BspANI GGCC 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 3 cut(s) 76, 364, 400
BssNAI GTATAC 1 cut(s) 387
BssSI CACGAG 1 cut(s) 312
Bst1107I GTATAC 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 26, 292
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 282, 350
BstKTI GATC 3 cut(s) 79, 367, 403
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 76, 364, 400
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 193, 259
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 6, 22, 322
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BstZ17I GTATAC 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 411
BsuI GTATCC 2 cut(s) 313, 370
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 282, 350
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 116, 250, 330
CseI GACGC 1 cut(s) 25
CviAII CATG 6 cut(s) 138, 190, 238, 256, 295, 382
CviJI RGCY 3 cut(s) 68, 310, 406
CviKI_1 RGCY 3 cut(s) 68, 310, 406
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 78, 366, 402
DpnII GATC 3 cut(s) 76, 364, 400
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 305
EcoT22I ATGCAT 1 cut(s) 300
FaeI CATG 6 cut(s) 141, 193, 241, 259, 298, 385
FatI CATG 6 cut(s) 137, 189, 237, 255, 294, 381
FauI CCCGC 2 cut(s) 153, 419
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 5 cut(s) 5, 20, 33, 36, 336
FokI GGATG 2 cut(s) 269, 337
Fsp4HI GCNGC 5 cut(s) 5, 20, 33, 36, 336
FspBI CTAG 1 cut(s) 74
GluI GCNGC 5 cut(s) 5, 20, 33, 36, 336
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 310
HgaI GACGC 1 cut(s) 25
Hin1II CATG 6 cut(s) 141, 193, 241, 259, 298, 385
HinfI GANTC 3 cut(s) 128, 215, 358
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 4 cut(s) 74, 314, 362, 398
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 26, 292
HpyCH4V TGCA 3 cut(s) 22, 298, 350
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 6 cut(s) 141, 193, 241, 259, 298, 385
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 76, 364, 400
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 241, 292, 319, 368, 375, 411
Lsp1109I GCAGC 3 cut(s) 6, 22, 322
LweI GCATC 2 cut(s) 307, 359
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 26, 230
MalI GATC 3 cut(s) 78, 366, 402
MboI GATC 3 cut(s) 76, 364, 400
MboII GAAGA 1 cut(s) 293
MflI RGATCY 1 cut(s) 364
MluCI AATT 3 cut(s) 145, 164, 175
MlyI GAGTC 3 cut(s) 137, 209, 352
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 6 cut(s) 48, 205, 310, 321, 405, 417
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 433
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
NdeII GATC 3 cut(s) 76, 364, 400
NlaIII CATG 6 cut(s) 141, 193, 241, 259, 298, 385
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 26, 230
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 2 cut(s) 193, 259
PaeR7I CTCGAG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 310
PkrI GCNGC 5 cut(s) 6, 21, 34, 37, 337
PleI GAGTC 3 cut(s) 136, 209, 352
PpsI GAGTC 3 cut(s) 136, 209, 352
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 117
PspXI VCTCGAGB 1 cut(s) 196
PsuI RGATCY 1 cut(s) 364
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 5 cut(s) 5, 20, 33, 36, 336
Sau3AI GATC 3 cut(s) 76, 364, 400
SchI GAGTC 3 cut(s) 137, 209, 352
ScrFI CCNGG 1 cut(s) 307
SetI ASST 2 cut(s) 59, 344
SfaNI GCATC 2 cut(s) 307, 359
Sfr274I CTCGAG 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 3 cut(s) 145, 164, 175
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 3 cut(s) 33, 160, 426
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 74
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 26, 292
TaqI TCGA 2 cut(s) 60, 197
TasI AATT 3 cut(s) 145, 164, 175
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TscAI CASTG 3 cut(s) 116, 250, 337
TseFI GTSAC 2 cut(s) 26, 230
TseI GCWGC 4 cut(s) 4, 19, 35, 335
Tsp45I GTSAC 2 cut(s) 26, 230
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 3 cut(s) 116, 250, 337
XapI RAATTY 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 2 cut(s) 193, 259
XhoI CTCGAG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.