gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_32 | PF20167 | 333 - 422 | 5.8e-07 | Putative plant transposon protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 251 |
| AciI | CCGC | 2 cut(s) | 188, 206 |
| AclI | AACGTT | 1 cut(s) | 718 |
| AclWI | GGATC | 5 cut(s) | 187, 335, 897, 1511, 1532 |
| AcsI | RAATTY | 2 cut(s) | 231, 728 |
| AcuI | CTGAAG | 1 cut(s) | 897 |
| AfaI | GTAC | 6 cut(s) | 398, 410, 853, 1166, 1201, 1492 |
| AgsI | TTSAA | 7 cut(s) | 383, 533, 884, 1268, 1327, 1439, 1460 |
| AjnI | CCWGG | 1 cut(s) | 1395 |
| AluBI | AGCT | 9 cut(s) | 386, 490, 593, 710, 741, 1172, 1184, 1288, 1524 |
| AluI | AGCT | 9 cut(s) | 386, 490, 593, 710, 741, 1172, 1184, 1288, 1524 |
| Alw21I | GWGCWC | 2 cut(s) | 1018, 1423 |
| AlwI | GGATC | 5 cut(s) | 187, 335, 897, 1511, 1532 |
| AoxI | GGCC | 2 cut(s) | 240, 693 |
| ApeKI | GCWGC | 2 cut(s) | 1184, 1214 |
| ApoI | RAATTY | 2 cut(s) | 231, 728 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 921 |
| AspS9I | GGNCC | 1 cut(s) | 1351 |
| AsuHPI | GGTGA | 3 cut(s) | 65, 1153, 1304 |
| AsuII | TTCGAA | 1 cut(s) | 723 |
| AvaII | GGWCC | 1 cut(s) | 1351 |
| BaeGI | GKGCMC | 1 cut(s) | 1447 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 558, 590, 895, 927 |
| Bbv12I | GWGCWC | 2 cut(s) | 1018, 1423 |
| BbvI | GCAGC | 2 cut(s) | 1171, 1201 |
| BccI | CCATC | 5 cut(s) | 44, 359, 1038, 1078, 1513 |
| BceAI | ACGGC | 1 cut(s) | 1124 |
| BciT130I | CCWGG | 1 cut(s) | 1397 |
| BclI | TGATCA | 2 cut(s) | 442, 762 |
| BfaI | CTAG | 4 cut(s) | 305, 461, 503, 800 |
| BfmI | CTRYAG | 2 cut(s) | 24, 557 |
| BisI | GCNGC | 3 cut(s) | 206, 1185, 1215 |
| BlsI | GCNGC | 3 cut(s) | 207, 1186, 1216 |
| Bme1390I | CCNGG | 1 cut(s) | 1397 |
| Bme18I | GGWCC | 1 cut(s) | 1351 |
| BmgT120I | GGNCC | 1 cut(s) | 1351 |
| BmrFI | CCNGG | 1 cut(s) | 1397 |
| BmrI | ACTGGG | 1 cut(s) | 297 |
| BmsI | GCATC | 3 cut(s) | 578, 917, 946 |
| BmuI | ACTGGG | 1 cut(s) | 297 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 725, 757 |
| BpmI | CTGGAG | 1 cut(s) | 1379 |
| Bpu10I | CCTNAGC | 1 cut(s) | 960 |
| Bpu14I | TTCGAA | 1 cut(s) | 723 |
| BpuEI | CTTGAG | 5 cut(s) | 87, 512, 570, 1008, 1242 |
| BsaBI | GATNNNNATC | 1 cut(s) | 339 |
| BsaJI | CCNNGG | 2 cut(s) | 1354, 1386 |
| BsaWI | WCCGGW | 1 cut(s) | 1138 |
| Bse1I | ACTGG | 2 cut(s) | 292, 999 |
| Bse3DI | GCAATG | 2 cut(s) | 871, 1342 |
| Bse8I | GATNNNNATC | 1 cut(s) | 339 |
| BseBI | CCWGG | 1 cut(s) | 1397 |
| BseDI | CCNNGG | 2 cut(s) | 1354, 1386 |
| BseGI | GGATG | 4 cut(s) | 145, 568, 613, 961 |
| BseJI | GATNNNNATC | 1 cut(s) | 339 |
| BseMI | GCAATG | 2 cut(s) | 871, 1342 |
| BseMII | CTCAG | 4 cut(s) | 965, 974, 1091, 1143 |
| BseNI | ACTGG | 2 cut(s) | 292, 999 |
| BseRI | GAGGAG | 2 cut(s) | 27, 1115 |
| BseSI | GKGCMC | 1 cut(s) | 1447 |
| BseXI | GCAGC | 2 cut(s) | 1171, 1201 |
| BseYI | CCCAGC | 1 cut(s) | 1520 |
| BsgI | GTGCAG | 1 cut(s) | 218 |
| BshFI | GGCC | 2 cut(s) | 242, 695 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1018, 1423 |
| BsiSI | CCGG | 1 cut(s) | 1139 |
| BslFI | GGGAC | 1 cut(s) | 539 |
| BsmFI | GGGAC | 1 cut(s) | 539 |
| BsnI | GGCC | 2 cut(s) | 242, 695 |
| Bsp119I | TTCGAA | 1 cut(s) | 723 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1018, 1423, 1447 |
| Bsp1407I | TGTACA | 3 cut(s) | 396, 408, 1164 |
| BspACI | CCGC | 2 cut(s) | 188, 206 |
| BspANI | GGCC | 2 cut(s) | 242, 695 |
| BspCNI | CTCAG | 4 cut(s) | 964, 973, 1090, 1144 |
| BspHI | TCATGA | 2 cut(s) | 712, 1276 |
| BspMAI | CTGCAG | 2 cut(s) | 28, 561 |
| BspPI | GGATC | 5 cut(s) | 187, 335, 897, 1511, 1532 |
| BspT104I | TTCGAA | 1 cut(s) | 723 |
| BsrDI | GCAATG | 2 cut(s) | 871, 1342 |
| BsrGI | TGTACA | 3 cut(s) | 396, 408, 1164 |
| BsrI | ACTGG | 2 cut(s) | 292, 999 |
| BssECI | CCNNGG | 2 cut(s) | 1354, 1386 |
| BssT1I | CCWWGG | 1 cut(s) | 1386 |
| Bst2UI | CCWGG | 1 cut(s) | 1397 |
| Bst4CI | ACNGT | 2 cut(s) | 421, 1414 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 196 |
| BstAUI | TGTACA | 3 cut(s) | 396, 408, 1164 |
| BstBI | TTCGAA | 1 cut(s) | 723 |
| BstC8I | GCNNGC | 3 cut(s) | 693, 739, 1482 |
| BstDEI | CTNAG | 4 cut(s) | 951, 960, 1077, 1152 |
| BstDSI | CCRYGG | 1 cut(s) | 1354 |
| BstF5I | GGATG | 4 cut(s) | 145, 568, 613, 961 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 196, 205, 1294, 1451 |
| BstNI | CCWGG | 1 cut(s) | 1397 |
| BstSCI | CCNGG | 1 cut(s) | 1395 |
| BstSFI | CTRYAG | 2 cut(s) | 24, 557 |
| BstSLI | GKGCMC | 1 cut(s) | 1447 |
| BstV1I | GCAGC | 2 cut(s) | 1171, 1201 |
| BstX2I | RGATCY | 2 cut(s) | 179, 889 |
| BstYI | RGATCY | 2 cut(s) | 179, 889 |
| BsuRI | GGCC | 2 cut(s) | 242, 695 |
| BtgI | CCRYGG | 1 cut(s) | 1354 |
| BtgZI | GCGATG | 1 cut(s) | 282 |
| BtsCI | GGATG | 4 cut(s) | 145, 568, 613, 961 |
| BtsI | GCAGTG | 1 cut(s) | 1371 |
| BtsIMutI | CAGTG | 2 cut(s) | 1006, 1371 |
| Cac8I | GCNNGC | 3 cut(s) | 693, 739, 1482 |
| CciI | TCATGA | 2 cut(s) | 712, 1276 |
| Cfr13I | GGNCC | 1 cut(s) | 1351 |
| CseI | GACGC | 1 cut(s) | 861 |
| Csp6I | GTAC | 6 cut(s) | 397, 409, 852, 1165, 1200, 1491 |
| CviAII | CATG | 8 cut(s) | 209, 244, 320, 713, 1010, 1162, 1277, 1514 |
| CviQI | GTAC | 6 cut(s) | 397, 409, 852, 1165, 1200, 1491 |
| DdeI | CTNAG | 4 cut(s) | 951, 960, 1077, 1152 |
| Eco130I | CCWWGG | 1 cut(s) | 1386 |
| Eco47I | GGWCC | 1 cut(s) | 1351 |
| Eco57I | CTGAAG | 1 cut(s) | 897 |
| EcoRII | CCWGG | 1 cut(s) | 1395 |
| EcoT14I | CCWWGG | 1 cut(s) | 1386 |
| ErhI | CCWWGG | 1 cut(s) | 1386 |
| FaeI | CATG | 8 cut(s) | 212, 247, 323, 716, 1013, 1165, 1280, 1517 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 354, 386 |
| FaqI | GGGAC | 1 cut(s) | 539 |
| FatI | CATG | 8 cut(s) | 208, 243, 319, 712, 1009, 1161, 1276, 1513 |
| FbaI | TGATCA | 2 cut(s) | 442, 762 |
| FblI | GTMKAC | 1 cut(s) | 251 |
| Fnu4HI | GCNGC | 3 cut(s) | 206, 1185, 1215 |
| FokI | GGATG | 4 cut(s) | 132, 575, 620, 968 |
| Fsp4HI | GCNGC | 3 cut(s) | 206, 1185, 1215 |
| FspBI | CTAG | 4 cut(s) | 305, 461, 503, 800 |
| GluI | GCNGC | 3 cut(s) | 206, 1185, 1215 |
| GsaI | CCCAGC | 1 cut(s) | 1524 |
| GsuI | CTGGAG | 1 cut(s) | 1379 |
| HaeIII | GGCC | 2 cut(s) | 242, 695 |
| HapII | CCGG | 1 cut(s) | 1139 |
| HgaI | GACGC | 1 cut(s) | 861 |
| Hin1II | CATG | 8 cut(s) | 212, 247, 323, 716, 1013, 1165, 1280, 1517 |
| HincII | GTYRAC | 1 cut(s) | 515 |
| HindII | GTYRAC | 1 cut(s) | 515 |
| HindIII | AAGCTT | 1 cut(s) | 488 |
| HinfI | GANTC | 3 cut(s) | 142, 329, 1144 |
| HpaII | CCGG | 1 cut(s) | 1139 |
| HphI | GGTGA | 3 cut(s) | 65, 1153, 1304 |
| Hpy166II | GTNNAC | 4 cut(s) | 141, 252, 399, 515 |
| Hpy188I | TCNGA | 7 cut(s) | 184, 334, 355, 745, 894, 916, 973 |
| Hpy8I | GTNNAC | 4 cut(s) | 141, 252, 399, 515 |
| Hpy99I | CGWCG | 1 cut(s) | 1234 |
| HpyAV | CCTTC | 7 cut(s) | 127, 788, 839, 1204, 1297, 1394, 1433 |
| HpyCH4III | ACNGT | 2 cut(s) | 421, 1414 |
| HpyCH4IV | ACGT | 3 cut(s) | 7, 718, 1489 |
| HpyCH4V | TGCA | 7 cut(s) | 26, 199, 430, 559, 691, 864, 1465 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 196, 205, 1294, 1451 |
| HpyF3I | CTNAG | 4 cut(s) | 951, 960, 1077, 1152 |
| HpySE526I | ACGT | 3 cut(s) | 7, 718, 1489 |
| Hsp92II | CATG | 8 cut(s) | 212, 247, 323, 716, 1013, 1165, 1280, 1517 |
| Ksp22I | TGATCA | 2 cut(s) | 442, 762 |
| LmnI | GCTCC | 1 cut(s) | 1529 |
| Lsp1109I | GCAGC | 2 cut(s) | 1171, 1201 |
| LweI | GCATC | 3 cut(s) | 578, 917, 946 |
| MaeI | CTAG | 4 cut(s) | 305, 461, 503, 800 |
| MaeII | ACGT | 3 cut(s) | 7, 718, 1489 |
| MaeIII | GTNAC | 3 cut(s) | 8, 260, 580 |
| MboII | GAAGA | 8 cut(s) | 85, 224, 335, 374, 868, 903, 1150, 1500 |
| MflI | RGATCY | 2 cut(s) | 179, 889 |
| MhlI | GDGCHC | 3 cut(s) | 1018, 1423, 1447 |
| MlyI | GAGTC | 1 cut(s) | 136 |
| MroXI | GAANNNNTTC | 1 cut(s) | 921 |
| MseI | TTAA | 3 cut(s) | 423, 638, 668 |
| MslI | CAYNNNNRTG | 2 cut(s) | 324, 1281 |
| MspI | CCGG | 1 cut(s) | 1139 |
| MspR9I | CCNGG | 1 cut(s) | 1397 |
| MvaI | CCWGG | 1 cut(s) | 1397 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 196, 205, 1294, 1451 |
| NlaIII | CATG | 8 cut(s) | 212, 247, 323, 716, 1013, 1165, 1280, 1517 |
| NmuCI | GTSAC | 3 cut(s) | 8, 260, 580 |
| NspV | TTCGAA | 1 cut(s) | 723 |
| PagI | TCATGA | 2 cut(s) | 712, 1276 |
| PdmI | GAANNNNTTC | 1 cut(s) | 921 |
| PfeI | GAWTC | 2 cut(s) | 329, 1144 |
| PfoI | TCCNGGA | 1 cut(s) | 1395 |
| PkrI | GCNGC | 3 cut(s) | 207, 1186, 1216 |
| PleI | GAGTC | 1 cut(s) | 136 |
| PpsI | GAGTC | 1 cut(s) | 136 |
| Psp1406I | AACGTT | 1 cut(s) | 718 |
| Psp6I | CCWGG | 1 cut(s) | 1395 |
| PspFI | CCCAGC | 1 cut(s) | 1520 |
| PspGI | CCWGG | 1 cut(s) | 1395 |
| PspPI | GGNCC | 1 cut(s) | 1351 |
| PstI | CTGCAG | 2 cut(s) | 28, 561 |
| PsuI | RGATCY | 2 cut(s) | 179, 889 |
| RsaI | GTAC | 6 cut(s) | 398, 410, 853, 1166, 1201, 1492 |
| RsaNI | GTAC | 6 cut(s) | 397, 409, 852, 1165, 1200, 1491 |
| RseI | CAYNNNNRTG | 2 cut(s) | 324, 1281 |
| SaqAI | TTAA | 3 cut(s) | 423, 638, 668 |
| SatI | GCNGC | 3 cut(s) | 206, 1185, 1215 |
| Sau96I | GGNCC | 1 cut(s) | 1351 |
| SchI | GAGTC | 1 cut(s) | 136 |
| ScrFI | CCNGG | 1 cut(s) | 1397 |
| SduI | GDGCHC | 3 cut(s) | 1018, 1423, 1447 |
| SfaNI | GCATC | 3 cut(s) | 578, 917, 946 |
| SfcI | CTRYAG | 2 cut(s) | 24, 557 |
| SfuI | TTCGAA | 1 cut(s) | 723 |
| SinI | GGWCC | 1 cut(s) | 1351 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 324, 1281 |
| SmlI | CTYRAG | 5 cut(s) | 102, 491, 585, 1023, 1257 |
| SmoI | CTYRAG | 5 cut(s) | 102, 491, 585, 1023, 1257 |
| SsiI | CCGC | 2 cut(s) | 188, 206 |
| SspMI | CTAG | 4 cut(s) | 305, 461, 503, 800 |
| StyD4I | CCNGG | 1 cut(s) | 1395 |
| StyI | CCWWGG | 1 cut(s) | 1386 |
| TaaI | ACNGT | 2 cut(s) | 421, 1414 |
| TaiI | ACGT | 3 cut(s) | 10, 721, 1492 |
| TaqI | TCGA | 3 cut(s) | 48, 723, 1194 |
| TaqII | GACCGA | 1 cut(s) | 1222 |
| TatI | WGTACW | 3 cut(s) | 396, 408, 1164 |
| TauI | GCSGC | 1 cut(s) | 208 |
| TfiI | GAWTC | 2 cut(s) | 329, 1144 |
| Tru1I | TTAA | 3 cut(s) | 423, 638, 668 |
| Tru9I | TTAA | 3 cut(s) | 423, 638, 668 |
| TscAI | CASTG | 2 cut(s) | 1006, 1378 |
| TseFI | GTSAC | 3 cut(s) | 8, 260, 580 |
| TseI | GCWGC | 2 cut(s) | 1184, 1214 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 260, 580 |
| TspGWI | ACGGA | 3 cut(s) | 550, 1343, 1516 |
| TspRI | CASTG | 2 cut(s) | 1006, 1378 |
| VpaK11BI | GGWCC | 1 cut(s) | 1351 |
| XapI | RAATTY | 2 cut(s) | 231, 728 |
| XbaI | TCTAGA | 2 cut(s) | 460, 502 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1037 |
| XmiI | GTMKAC | 1 cut(s) | 251 |
| XmnI | GAANNNNTTC | 1 cut(s) | 921 |
| XspI | CTAG | 4 cut(s) | 305, 461, 503, 800 |