FvH4_6g22791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001194
Physical Location & Seq
Forward (+)
16480402 .. 16481803
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22791.t1

Sequence Viewer

Length: 1227 bp
ATGAACCGAGCTCCGGTTGAGACCTCCTTGGAGGTCCCTGCTTCTGGGTCTCCGGTGTCTAGGCGACCTCCTCCCTCCAAGGCTCCTGCCAAGCCCTCCTCCAGTGCTAAGCCCTCTCGTTCTGGTCCTCGGAACTCGGCTGACAAAGGTAAGGGTCCCATGGATGGCACCAGGCCTCCCCAGTCCACCATGCCTCCCAAGAAGAGATCTGTTGAGGTATCCCACTCCTCTGTTCCTCCTCTTTCTCACTTTCAATCTGAGGAGAGTCGAGATTATTTCTGTACTTCTATTGTTACTAAGAGAATAGTGTTTGAGAGACCTATCGCTTTTGATTCTCTACATCCTGAAGTTAAGAAGTTAGCTGTTCACTGGGGTTGGGATCAGGTTCTGACATCCTTCCATAGGGTCAATAGGACTTGGGTTCAAGAATTTTATACCAATTTTCCTCAGAATGCACCTGAAAAGGTGAAAATTCAATCTCAGCGCCCCATTGTTGTCAAGGTTAGGGGTAAGGATGTTGACATTTCTCCTCCTAGGATTCGATCTAGCCTTTCTCTCCCTGCCACAGAACCCAACTCGGTCAAACTGGTTTTGGATTACATCCAATCTGTCTCTCTTCTTGAGCTAGGAGGAGCACTTTATCAGTCCACCTTTCCTCAGCCAGAGCTCACTGCTTCTCATCTTTCCAGTCAATTCATGTCTGAGTTGTGCAAGCTTTTAGGCTTCGTGGTTCGCTCTCTTTTGACTCCCACCTCCAACACAGGCAAAATCACTCACCAACAGGCTGCCTTGATTAAATATCTGATTTCTAGCCCTTCCAAGCCTCGTTTTCCTGCTGAGTATTTCATTTACAAAGCCATCAGGGGTGCGGGCACATCTCTTCGTGAGAATAGCTCTCTTGTCTTCCCTGCTGTCATCACCAAACTATGTTTGGATGCTGGTGTACATGTCCTTGATACTGATGTCATGGCTACTGAGAATGAGGCTGCTCCGACCCTGCTAAAGCAAGAGATCAAGCATCAAGTTTCAAATGCTGTTGCTACTCTGCAAGCTTCTTTTACTGCTCAGTTTGAGGCCCTGCGAAATGAACTGAAGGAATCTGTGGGGACACATGCGCCTCCTGCTAACACTTCTGGTGGGGATGGAGCCTCGTCTACCCCTTCTTCCAGCTCTCGTTCTGGGGAGTCCTCTGATGCCTCTGCTGAGGAGTCAGAAGAAGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

44.27

Weight (kDa)

9.19

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 125 - 315 5.2e-23 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 1154
AciI CCGC 1 cut(s) 869
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 2 cut(s) 428, 471
AcuI CTGAAG 2 cut(s) 366, 1112
AfaI GTAC 2 cut(s) 283, 945
AfiI CCNNNNNNNGG 4 cut(s) 13, 44, 164, 402
AflIII ACRYGT 1 cut(s) 946
AgsI TTSAA 4 cut(s) 254, 425, 476, 1029
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 9 cut(s) 11, 362, 625, 667, 715, 894, 1052, 1170, 1220
AluI AGCT 9 cut(s) 11, 362, 625, 667, 715, 894, 1052, 1170, 1220
Alw21I GWGCWC 3 cut(s) 13, 637, 669
Alw26I GTCTC 4 cut(s) 14, 54, 310, 616
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 2 cut(s) 173, 1074
ApeKI GCWGC 2 cut(s) 785, 986
ApoI RAATTY 2 cut(s) 428, 471
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 2 cut(s) 486, 1117
AspS9I GGNCC 4 cut(s) 34, 125, 155, 1075
AsuHPI GGTGA 3 cut(s) 478, 767, 910
AvaII GGWCC 3 cut(s) 34, 125, 155
AvrII CCTAGG 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 875
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 2 cut(s) 13, 669
BbsI GAAGAC 1 cut(s) 895
Bbv12I GWGCWC 3 cut(s) 13, 637, 669
BbvCI CCTCAGC 2 cut(s) 657, 1203
BbvI GCAGC 2 cut(s) 772, 973
BccI CCATC 3 cut(s) 158, 866, 1136
BciT130I CCWGG 1 cut(s) 172
BciVI GTATCC 1 cut(s) 229
BcoDI GTCTC 4 cut(s) 14, 54, 310, 616
BfaI CTAG 5 cut(s) 60, 534, 546, 626, 810
BfoI RGCGCY 1 cut(s) 487
BfuI GTATCC 1 cut(s) 229
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 786, 987
BlnI CCTAGG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 2 cut(s) 787, 988
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 3 cut(s) 34, 125, 155
BmgT120I GGNCC 4 cut(s) 34, 125, 155, 1075
BmiI GGNNCC 6 cut(s) 36, 84, 156, 157, 169, 1147
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 2 cut(s) 175, 379
BmsI GCATC 3 cut(s) 925, 1027, 1183
BmuI ACTGGG 2 cut(s) 175, 379
BpiI GAAGAC 1 cut(s) 895
BplI GAGNNNNNCTC 2 cut(s) 878, 910
BpmI CTGGAG 1 cut(s) 85
Bpu10I CCTNAGC 2 cut(s) 657, 1203
Bpu1102I GCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 641
BsaI GGTCTC 3 cut(s) 14, 54, 310
BsaJI CCNNGG 5 cut(s) 27, 78, 128, 159, 533
BsaWI WCCGGW 2 cut(s) 13, 52
BsaXI ACNNNNNCTCC 4 cut(s) 160, 178, 190, 208
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 44, 164, 402
Bse1I ACTGG 5 cut(s) 102, 181, 374, 591, 687
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 5 cut(s) 27, 78, 128, 159, 533
BseGI GGATG 7 cut(s) 169, 340, 392, 520, 600, 940, 1147
BseLI CCNNNNNNNGG 4 cut(s) 13, 44, 164, 402
BseMII CTCAG 9 cut(s) 249, 461, 494, 671, 693, 828, 966, 1079, 1194
BseNI ACTGG 5 cut(s) 102, 181, 374, 591, 687
BseRI GAGGAG 8 cut(s) 60, 88, 217, 228, 275, 519, 645, 1220
BseSI GKGCMC 1 cut(s) 875
BseXI GCAGC 2 cut(s) 772, 973
BshFI GGCC 2 cut(s) 175, 1076
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 3 cut(s) 13, 637, 669
BsiSI CCGG 2 cut(s) 14, 53
BslFI GGGAC 3 cut(s) 20, 141, 1120
BslI CCNNNNNNNGG 4 cut(s) 13, 44, 164, 402
BsmAI GTCTC 4 cut(s) 14, 54, 310, 616
BsmFI GGGAC 3 cut(s) 20, 141, 1120
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 175, 1076
Bso31I GGTCTC 3 cut(s) 14, 54, 310
Bsp1286I GDGCHC 4 cut(s) 13, 637, 669, 875
Bsp1407I TGTACA 1 cut(s) 943
Bsp143I GATC 4 cut(s) 206, 379, 542, 1011
Bsp1720I GCTNAGC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 869
BspANI GGCC 2 cut(s) 175, 1076
BspCNI CTCAG 9 cut(s) 250, 460, 493, 670, 694, 829, 967, 1078, 1195
BspLI GGNNCC 6 cut(s) 36, 84, 156, 157, 169, 1147
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 3 cut(s) 14, 54, 310
BsrGI TGTACA 1 cut(s) 943
BsrI ACTGG 5 cut(s) 102, 181, 374, 591, 687
BssECI CCNNGG 5 cut(s) 27, 78, 128, 159, 533
BssMI GATC 4 cut(s) 206, 379, 542, 1011
BssT1I CCWWGG 4 cut(s) 27, 78, 159, 533
Bst2UI CCWGG 1 cut(s) 172
Bst6I CTCTTC 3 cut(s) 197, 621, 885
BstAUI TGTACA 1 cut(s) 943
BstC8I GCNNGC 3 cut(s) 713, 871, 1050
BstDSI CCRYGG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 7 cut(s) 169, 340, 392, 520, 600, 940, 1147
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 2 cut(s) 486, 1117
BstKTI GATC 4 cut(s) 209, 382, 545, 1014
BstMAI GTCTC 4 cut(s) 14, 54, 310, 616
BstMBI GATC 4 cut(s) 206, 379, 542, 1011
BstMWI GCNNNNNNNGC 1 cut(s) 1121
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 2 cut(s) 950, 1115
BstSCI CCNGG 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 875
BstV1I GCAGC 2 cut(s) 772, 973
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 175, 1076
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 7 cut(s) 169, 340, 392, 520, 600, 940, 1147
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 3 cut(s) 109, 367, 669
Cac8I GCNNGC 3 cut(s) 713, 871, 1050
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 2 cut(s) 486, 1117
Cfr13I GGNCC 4 cut(s) 34, 125, 155, 1075
Csp6I GTAC 2 cut(s) 282, 944
CviAII CATG 6 cut(s) 160, 190, 697, 947, 967, 1112
CviQI GTAC 2 cut(s) 282, 944
DpnI GATC 4 cut(s) 208, 381, 544, 1013
DpnII GATC 4 cut(s) 206, 379, 542, 1011
Eam1104I CTCTTC 3 cut(s) 197, 621, 885
EarI CTCTTC 3 cut(s) 197, 621, 885
Ecl136II GAGCTC 2 cut(s) 11, 667
Eco130I CCWWGG 4 cut(s) 27, 78, 159, 533
Eco147I AGGCCT 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 13, 669
Eco31I GGTCTC 3 cut(s) 14, 54, 310
Eco47I GGWCC 3 cut(s) 34, 125, 155
Eco53kI GAGCTC 2 cut(s) 11, 667
Eco57I CTGAAG 2 cut(s) 366, 1112
EcoICRI GAGCTC 2 cut(s) 11, 667
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoO109I RGGNCCY 3 cut(s) 34, 155, 1075
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 4 cut(s) 27, 78, 159, 533
EcoT38I GRGCYC 2 cut(s) 13, 669
ErhI CCWWGG 4 cut(s) 27, 78, 159, 533
FaeI CATG 6 cut(s) 163, 193, 700, 950, 970, 1115
FaiI YATR 9 cut(s) 161, 191, 402, 435, 698, 928, 948, 968, 1113
FaqI GGGAC 3 cut(s) 20, 141, 1120
FatI CATG 6 cut(s) 159, 189, 696, 946, 966, 1111
FauI CCCGC 1 cut(s) 862
FblI GTMKAC 1 cut(s) 1154
Fnu4HI GCNGC 2 cut(s) 786, 987
FokI GGATG 7 cut(s) 176, 327, 379, 527, 587, 947, 1154
FriOI GRGCYC 2 cut(s) 13, 669
Fsp4HI GCNGC 2 cut(s) 786, 987
FspBI CTAG 5 cut(s) 60, 534, 546, 626, 810
GlaI GCGC 2 cut(s) 485, 1116
GluI GCNGC 2 cut(s) 786, 987
GsuI CTGGAG 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 2 cut(s) 175, 1076
HapII CCGG 2 cut(s) 14, 53
HhaI GCGC 2 cut(s) 486, 1117
Hin1II CATG 6 cut(s) 163, 193, 700, 950, 970, 1115
Hin6I GCGC 2 cut(s) 484, 1115
HinP1I GCGC 2 cut(s) 484, 1115
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 713, 1050
HinfI GANTC 7 cut(s) 265, 332, 538, 745, 1097, 1184, 1208
HpaII CCGG 2 cut(s) 14, 53
HphI GGTGA 3 cut(s) 478, 767, 910
Hpy166II GTNNAC 6 cut(s) 186, 367, 520, 648, 944, 1155
Hpy188I TCNGA 9 cut(s) 132, 259, 390, 450, 703, 804, 993, 1192, 1213
Hpy188III TCNNGA 5 cut(s) 269, 344, 425, 620, 884
Hpy8I GTNNAC 6 cut(s) 186, 367, 520, 648, 944, 1155
HpyAV CCTTC 4 cut(s) 406, 825, 1087, 1170
HpyCH4V TGCA 3 cut(s) 455, 711, 1048
HpyF10VI GCNNNNNNNGC 1 cut(s) 1121
Hsp92II CATG 6 cut(s) 163, 193, 700, 950, 970, 1115
HspAI GCGC 2 cut(s) 484, 1115
KflI GGGWCCC 1 cut(s) 155
Kzo9I GATC 4 cut(s) 206, 379, 542, 1011
LmnI GCTCC 5 cut(s) 16, 88, 632, 994, 1145
Lsp1109I GCAGC 2 cut(s) 772, 973
LweI GCATC 3 cut(s) 925, 1027, 1183
MaeI CTAG 5 cut(s) 60, 534, 546, 626, 810
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 208, 381, 544, 1013
MboI GATC 4 cut(s) 206, 379, 542, 1011
MboII GAAGA 6 cut(s) 214, 608, 872, 895, 1155, 1226
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 4 cut(s) 13, 637, 669, 875
MluCI AATT 4 cut(s) 428, 439, 471, 692
MlyI GAGTC 4 cut(s) 274, 739, 1193, 1217
MmeI TCCRAC 2 cut(s) 780, 1016
MseI TTAA 2 cut(s) 351, 795
MspI CCGG 2 cut(s) 14, 53
MspR9I CCNGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 1121
NcoI CCATGG 1 cut(s) 159
NdeII GATC 4 cut(s) 206, 379, 542, 1011
NlaIII CATG 6 cut(s) 163, 193, 700, 950, 970, 1115
NlaIV GGNNCC 6 cut(s) 36, 84, 156, 157, 169, 1147
NmeAIII GCCGAG 1 cut(s) 116
NspI RCATGY 2 cut(s) 950, 1115
PceI AGGCCT 1 cut(s) 175
PciI ACATGT 1 cut(s) 946
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 332, 538, 1097
PkrI GCNGC 2 cut(s) 787, 988
PleI GAGTC 4 cut(s) 273, 739, 1192, 1216
PpsI GAGTC 4 cut(s) 273, 739, 1192, 1216
PpuMI RGGWCCY 2 cut(s) 34, 155
PscI ACATGT 1 cut(s) 946
Psp124BI GAGCTC 2 cut(s) 13, 669
Psp5II RGGWCCY 2 cut(s) 34, 155
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 6 cut(s) 36, 84, 156, 157, 169, 1147
PspPI GGNCC 4 cut(s) 34, 125, 155, 1075
PspPPI RGGWCCY 2 cut(s) 34, 155
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 2 cut(s) 283, 945
RsaNI GTAC 2 cut(s) 282, 944
SacI GAGCTC 2 cut(s) 13, 669
SaqAI TTAA 2 cut(s) 351, 795
SatI GCNGC 2 cut(s) 786, 987
Sau3AI GATC 4 cut(s) 206, 379, 542, 1011
Sau96I GGNCC 4 cut(s) 34, 125, 155, 1075
SchI GAGTC 4 cut(s) 274, 739, 1193, 1217
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 4 cut(s) 13, 637, 669, 875
SfaNI GCATC 3 cut(s) 925, 1027, 1183
SinI GGWCC 3 cut(s) 34, 125, 155
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 4 cut(s) 428, 439, 471, 692
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 1 cut(s) 869
SspMI CTAG 5 cut(s) 60, 534, 546, 626, 810
SstI GAGCTC 2 cut(s) 13, 669
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 4 cut(s) 27, 78, 159, 533
TaqI TCGA 2 cut(s) 268, 541
TaqII GACCGA 1 cut(s) 568
TasI AATT 4 cut(s) 428, 439, 471, 692
TatI WGTACW 2 cut(s) 281, 943
TfiI GAWTC 3 cut(s) 332, 538, 1097
Tru1I TTAA 2 cut(s) 351, 795
Tru9I TTAA 2 cut(s) 351, 795
TscAI CASTG 3 cut(s) 109, 374, 676
TseI GCWGC 2 cut(s) 785, 986
TspDTI ATGAA 4 cut(s) 17, 685, 835, 1101
TspRI CASTG 3 cut(s) 109, 374, 676
VpaK11BI GGWCC 3 cut(s) 34, 125, 155
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 2 cut(s) 428, 471
XceI RCATGY 2 cut(s) 950, 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 928
XmaJI CCTAGG 1 cut(s) 533
XmiI GTMKAC 1 cut(s) 1154
XspI CTAG 5 cut(s) 60, 534, 546, 626, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.