Rh5CG498100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001194
Physical Location & Seq
Reverse (-)
69283111 .. 69287388
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG498100.1

Sequence Viewer

Length: 765 bp
ATGAAGGTTGTGATTTCCCGTCATCACCTCCTTGGAGAGCAGTCTGCTCTGCGCTCTCGGACGACTCAGGTTGGTTCTAATGCTTCCTCTCAAGATGCTACCTTGGCTGTCCCATCTTCTTCAAGACCTGCGGTCTCCACGCTTCATCTCTCTGAGCTCAACTCTGATGTCTCGCTTGACTCTGTTAAAAGCTATATTGAAGGGTTCAACAAAAAACGACTCATGGCTGAGTTGTATTGGAATAAAGAGGCAGTCAATCCATCTGACACCTATGCTACTCTTGGTCATTTATCTCAGCTCTCCAAGCTTGTATACCATTTTGTGACCAGTTACTTGTGGCCGTCTTCTCAGTCTTCTCAACTCTCCATCGGCCCGGGTGCTTTAGCTGTTGCTATTCTGACTCGAAAGTTCTCCTCCATTCCTCTTCATCAATATGTCTTTGATAGAGTGAAGGAAGCTGCTTTAACCAAGGGCACCAGTACCTCAGCCTCCCTTATTTTTCCATGCCTGATCACTCAAATCTGCAATGCAAGCAATGTTCCCACCTCTCGTGAAGATGATTGGGCTGAGGCCCCCTTGTATAATCTGCATTCTCTGTCTCGCAGTGATGGGCAAAGCTCTCTTCCTTGCCCCTCCATCAATGATGAAGCTTGGTACACGCTATTGGATCAACGTTTTTCTCGTCTTGAAGCATCGTTTACTGCACTTCAGTCCTCCATCAAAGAGACCCTGGCTCCGTTTTCTCGTCTCTTTCACAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.01

Weight (kDa)

8.41

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 80 - 181 1.4e-10 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 473
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 131
AclI AACGTT 1 cut(s) 673
AclWI GGATC 1 cut(s) 675
AcoI YGGCCR 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 2 cut(s) 481, 656
AgsI TTSAA 4 cut(s) 123, 200, 208, 689
AhdI GACNNNNNGTC 1 cut(s) 131
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 8 cut(s) 157, 192, 298, 307, 386, 458, 618, 650
AluI AGCT 8 cut(s) 157, 192, 298, 307, 386, 458, 618, 650
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 5 cut(s) 139, 175, 603, 719, 752
AlwI GGATC 1 cut(s) 675
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 3 cut(s) 338, 370, 570
ApeKI GCWGC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 371, 571
AsuC2I CCSGG 2 cut(s) 374, 375
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 2 cut(s) 336, 345
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 2 cut(s) 484, 567
BbvI GCAGC 1 cut(s) 445
BccI CCATC 6 cut(s) 121, 268, 374, 602, 644, 725
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 2 cut(s) 374, 375
BcoDI GTCTC 5 cut(s) 139, 175, 603, 719, 752
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 374, 375, 731
BmeRI GACNNNNNGTC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 371, 571
BmiI GGNNCC 3 cut(s) 475, 573, 735
BmrFI CCNGG 3 cut(s) 374, 375, 731
BmsI GCATC 2 cut(s) 85, 701
BpiI GAAGAC 2 cut(s) 336, 345
BplI GAGNNNNNCTC 2 cut(s) 146, 178
Bpu10I CCTNAGC 2 cut(s) 484, 567
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 2 cut(s) 374, 375
BsaI GGTCTC 2 cut(s) 139, 719
BsaJI CCNNGG 5 cut(s) 31, 102, 373, 468, 729
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bse1I ACTGG 2 cut(s) 327, 477
Bse3DI GCAATG 2 cut(s) 532, 541
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 5 cut(s) 31, 102, 373, 468, 729
BseMI GCAATG 2 cut(s) 532, 541
BseMII CTCAG 7 cut(s) 80, 144, 219, 308, 362, 498, 558
BseNI ACTGG 2 cut(s) 327, 477
BseRI GAGGAG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 3 cut(s) 340, 372, 572
BshNI GGYRCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 5 cut(s) 139, 175, 603, 719, 752
BsmBI CGTCTC 1 cut(s) 752
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 3 cut(s) 340, 372, 572
Bso31I GGTCTC 2 cut(s) 139, 719
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 159, 476
Bsp143I GATC 2 cut(s) 510, 667
BspACI CCGC 1 cut(s) 131
BspANI GGCC 3 cut(s) 340, 372, 572
BspCNI CTCAG 7 cut(s) 79, 145, 220, 307, 361, 497, 559
BspLI GGNNCC 3 cut(s) 475, 573, 735
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 675
BspT107I GGYRCC 1 cut(s) 473
BspTNI GGTCTC 2 cut(s) 139, 719
BsrDI GCAATG 2 cut(s) 532, 541
BsrI ACTGG 2 cut(s) 327, 477
BssECI CCNNGG 5 cut(s) 31, 102, 373, 468, 729
BssMI GATC 2 cut(s) 510, 667
BssNAI GTATAC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 3 cut(s) 31, 102, 468
Bst1107I GTATAC 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 731
Bst6I CTCTTC 2 cut(s) 429, 627
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 7 cut(s) 66, 153, 228, 294, 348, 484, 567
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 513, 670
BstMAI GTCTC 5 cut(s) 139, 175, 603, 719, 752
BstMBI GATC 2 cut(s) 510, 667
BstMWI GCNNNNNNNGC 3 cut(s) 104, 304, 531
BstNI CCWGG 1 cut(s) 731
BstSCI CCNGG 3 cut(s) 372, 373, 729
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 2 cut(s) 336, 345
BstZ17I GTATAC 1 cut(s) 313
BsuRI GGCC 3 cut(s) 340, 372, 572
BtsI GCAGTG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 610
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 532
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 371, 571
Cfr9I CCCGGG 1 cut(s) 373
Csp6I GTAC 2 cut(s) 480, 655
CviAII CATG 2 cut(s) 223, 504
CviQI GTAC 2 cut(s) 480, 655
DdeI CTNAG 7 cut(s) 66, 153, 228, 294, 348, 484, 567
DpnI GATC 2 cut(s) 512, 669
DpnII GATC 2 cut(s) 510, 667
DriI GACNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 429, 627
Eam1105I GACNNNNNGTC 1 cut(s) 131
EarI CTCTTC 2 cut(s) 429, 627
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 3 cut(s) 31, 102, 468
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 2 cut(s) 139, 719
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 3 cut(s) 31, 102, 468
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 3 cut(s) 31, 102, 468
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 2 cut(s) 226, 507
FaiI YATR 7 cut(s) 195, 224, 273, 313, 435, 505, 582
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 222, 503
FbaI TGATCA 1 cut(s) 510
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 459
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 459
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 459
HaeIII GGCC 3 cut(s) 340, 372, 572
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 226, 507
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 2 cut(s) 305, 648
HinfI GANTC 4 cut(s) 64, 179, 219, 400
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 313, 657, 699
Hpy188I TCNGA 5 cut(s) 60, 154, 166, 265, 399
Hpy188III TCNNGA 4 cut(s) 92, 123, 551, 686
Hpy8I GTNNAC 3 cut(s) 313, 657, 699
HpyAV CCTTC 2 cut(s) 194, 445
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 525, 530, 589, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 304, 531
HpyF3I CTNAG 7 cut(s) 66, 153, 228, 294, 348, 484, 567
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 2 cut(s) 226, 507
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 2 cut(s) 510, 667
LmnI GCTCC 1 cut(s) 739
LpnPI CCDG 8 cut(s) 53, 141, 340, 387, 490, 521, 716, 743
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 2 cut(s) 85, 701
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 322, 329
MalI GATC 2 cut(s) 512, 669
MboI GATC 2 cut(s) 510, 667
MboII GAAGA 7 cut(s) 108, 111, 336, 345, 416, 566, 614
MhlI GDGCHC 2 cut(s) 159, 476
MlyI GAGTC 4 cut(s) 58, 173, 213, 394
MseI TTAA 2 cut(s) 186, 464
MslI CAYNNNNRTG 1 cut(s) 432
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 3 cut(s) 374, 375, 731
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 3 cut(s) 104, 304, 531
NciI CCSGG 2 cut(s) 374, 375
NdeII GATC 2 cut(s) 510, 667
NlaIII CATG 2 cut(s) 226, 507
NlaIV GGNNCC 3 cut(s) 475, 573, 735
NmuCI GTSAC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 679
PctI GAATGC 1 cut(s) 589
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 4 cut(s) 58, 173, 213, 394
PpsI GAGTC 4 cut(s) 58, 173, 213, 394
Psp124BI GAGCTC 1 cut(s) 159
Psp1406I AACGTT 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 475, 573, 735
PspPI GGNCC 2 cut(s) 371, 571
RsaI GTAC 2 cut(s) 481, 656
RsaNI GTAC 2 cut(s) 480, 655
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 186, 464
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 2 cut(s) 510, 667
Sau96I GGNCC 2 cut(s) 371, 571
SchI GAGTC 4 cut(s) 58, 173, 213, 394
ScrFI CCNGG 3 cut(s) 374, 375, 731
SduI GDGCHC 2 cut(s) 159, 476
SfaNI GCATC 2 cut(s) 85, 701
SmaI CCCGGG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
SsiI CCGC 1 cut(s) 131
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 372, 373, 729
StyI CCWWGG 3 cut(s) 31, 102, 468
TaiI ACGT 1 cut(s) 676
TaqI TCGA 1 cut(s) 403
Tru1I TTAA 2 cut(s) 186, 464
Tru9I TTAA 2 cut(s) 186, 464
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 4 cut(s) 17, 134, 416, 660
TspGWI ACGGA 1 cut(s) 726
TspMI CCCGGG 1 cut(s) 373
TspRI CASTG 1 cut(s) 610
XmaI CCCGGG 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.