Rh5BG262400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001194
Physical Location & Seq
Reverse (-)
32859180 .. 32859506
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG262400.1

Sequence Viewer

Length: 327 bp
ATGAAGATTCCGGAGCCTGTTGACAGTGTCAATAAGGTCAAGAGTGATGCTCATATAAAATTTTCCAACTCAAATCGTTCTTCTAGTAGTGCCCCTGTTGCCTCTTCTGGTCTGCATGATGATGCTTCTTTAACTTCGAATCCAATGTTGTGCGACTTGCAGAGTTCAATTATTGCTGTGGAAAAGGGGATAGCTTGCCTTAAGAATGCTGTCTCTCATGTTACTCAAGATACCATAGGTGACAATATTACTGGTTTGACTACCCGCATGTCTGCTTTGAAAGCTGAGTTAATTTCCATTACTAACGCTGTCGCTCATGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.22

Weight (kDa)

6.38

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 59
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 168, 280
AluBI AGCT 2 cut(s) 194, 284
AluI AGCT 2 cut(s) 194, 284
Alw26I GTCTC 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 10
ApoI RAATTY 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 84
BfrI CTTAAG 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 2 cut(s) 37, 112
BplI GAGNNNNNCTC 2 cut(s) 34, 66
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 256
BseAI TCCGGA 1 cut(s) 10
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 94
Bsp13I TCCGGA 1 cut(s) 10
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 200
BsrI ACTGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 109
BstAFI CTTAAG 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 98, 281
BstNSI RCATGY 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 196
CviAII CATG 4 cut(s) 116, 218, 268, 317
CviJI RGCY 3 cut(s) 16, 194, 284
CviKI_1 RGCY 3 cut(s) 16, 194, 284
DdeI CTNAG 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
FaeI CATG 4 cut(s) 119, 221, 271, 320
FaiI YATR 7 cut(s) 54, 56, 117, 219, 236, 269, 318
FatI CATG 4 cut(s) 115, 217, 267, 316
FauI CCCGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 84
HapII CCGG 1 cut(s) 11
Hin1II CATG 4 cut(s) 119, 221, 271, 320
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 7, 139
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 22
Hpy188III TCNNGA 4 cut(s) 11, 40, 227, 324
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 115, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 281
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 4 cut(s) 119, 221, 271, 320
Kpn2I TCCGGA 1 cut(s) 10
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 24, 30, 93, 108, 237
LweI GCATC 2 cut(s) 37, 112
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 220, 239
MboII GAAGA 3 cut(s) 16, 72, 96
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 3 cut(s) 59, 168, 291
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 1 cut(s) 112
MroI TCCGGA 1 cut(s) 10
MseI TTAA 3 cut(s) 131, 201, 290
MslI CAYNNNNRTG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 98, 281
NlaIII CATG 4 cut(s) 119, 221, 271, 320
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 271
NspV TTCGAA 1 cut(s) 137
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 7, 139
PflFI GACNNNGTC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 3 cut(s) 131, 201, 290
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 39, 196, 241, 286
SfaNI GCATC 2 cut(s) 37, 112
SfuI TTCGAA 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 200, 225
SmoI CTYRAG 2 cut(s) 200, 225
Sse9I AATT 3 cut(s) 59, 168, 291
SsiI CCGC 1 cut(s) 265
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 59, 168, 291
TfiI GAWTC 2 cut(s) 7, 139
Tru1I TTAA 3 cut(s) 131, 201, 290
Tru9I TTAA 3 cut(s) 131, 201, 290
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 200
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 271
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.