Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Reverse (-)

58873608 .. 58874402

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCTCCCTCTAAGCCTGCTCTGCGCTCTCGGAAGAATCAAGTTGTTTCTCCTGCTTCCTCTCAAGATGCTACCTTGGCTGCGCCATCTTCTTCAAGACCTGCGGCCTCCAGTAAGCACCCCTCAAAGAAGACCAAAAGAGTTCAAGAGTCTTCTCCAGATGCCCCATCTTCCACTTTGGACTCCTTTCGATTTGCATCTGCTGACTCTCAATTCAGGTTTTATTCCTTCTCTTCTCACAGACCGGTTCTTTTTGAGAAGAAATTCGATCTTCCTAGTCTTGGTCCTGCATTCTCTGACATTTTGGGTTATTATGGTTGGCTGGAGTTGCTTTCTGGGTTATCTGATGCAAACCTTTCTATTGTCCGAGAGTTTTATGCTAATTTTCCATCCCATATTGATTCTGTTGCTCCTTCTTCGGAACCAGATTTCAATGCTCATCTGTATCAAGTCTTTGTTCGTGGACAGTGGGTTGATTTCAATCCATCTCACATACATTCCGCGCTTCATCTCTCTGAGCTTAACTCTGATGTCTCGATTGACTCTGTTCGAAGCTATATTGAAGGATTCAACAAAAAACGACTCATGGATGAGTTGTATTGGAATAAGGAGGCAGTCAATCCATCTGACACCTATGCTACTCTTGGTCATTTATCTCAGCTCTCCAAGCTTGTATACCATTTTGTGACCAGTTACTTGTGGCCGTCTTCTCAGTCTTCTCAACTCTCCATCGGCCCGGGTGCTTTAGCTGTTGCTATTCTGACTCGAAAGTTCTCCTCCATTCCTCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.26

Weight (kDa)

8.67

Isoelectric Point (pI)

69.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_32	PF20167	105 - 256	1.7e-15	Putative plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	503
AciI	CCGC	2 cut(s)	104, 501
AcoI	YGGCCR	1 cut(s)	701
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	96, 146, 433, 481, 563, 571, 791
AluBI	AGCT	5 cut(s)	520, 555, 661, 670, 749
AluI	AGCT	5 cut(s)	520, 555, 661, 670, 749
Alw26I	GTCTC	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	736
AoxI	GGCC	3 cut(s)	105, 701, 733
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	244
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	3 cut(s)	27, 85, 505
AspS9I	GGNCC	2 cut(s)	284, 734
AsuC2I	CCSGG	2 cut(s)	737, 738
AsuII	TTCGAA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	284
BbsI	GAAGAC	4 cut(s)	137, 144, 699, 708
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	6 cut(s)	94, 175, 397, 493, 631, 737
BceAI	ACGGC	1 cut(s)	688
BcnI	CCSGG	2 cut(s)	737, 738
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	81, 105
BlsI	GCNGC	2 cut(s)	82, 106
Bme1390I	CCNGG	2 cut(s)	737, 738
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	736
BmgT120I	GGNCC	2 cut(s)	284, 734
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	2 cut(s)	737, 738
BmsI	GCATC	4 cut(s)	58, 151, 206, 337
BpiI	GAAGAC	4 cut(s)	137, 144, 699, 708
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	3 cut(s)	94, 141, 344
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	737, 738
BsaBI	GATNNNNATC	2 cut(s)	196, 480
BsaJI	CCNNGG	2 cut(s)	75, 736
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	111, 690
Bse8I	GATNNNNATC	2 cut(s)	196, 480
BseDI	CCNNGG	2 cut(s)	75, 736
BseGI	GGATG	2 cut(s)	389, 595
BseJI	GATNNNNATC	2 cut(s)	196, 480
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	507, 671, 725
BseNI	ACTGG	2 cut(s)	111, 690
BseRI	GAGGAG	1 cut(s)	766
BseXI	GCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	3 cut(s)	107, 703, 735
BshTI	ACCGGT	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	736
BsiSI	CCGG	2 cut(s)	245, 737
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	3 cut(s)	107, 703, 735
BsoBI	CYCGRG	1 cut(s)	736
Bsp119I	TTCGAA	1 cut(s)	550
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	104, 501
BspANI	GGCC	3 cut(s)	107, 703, 735
BspCNI	CTCAG	3 cut(s)	508, 670, 724
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	109
BspT104I	TTCGAA	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	111, 690
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	75, 736
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	75
Bst1107I	GTATAC	1 cut(s)	676
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	238, 792
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	12, 516, 657, 711
BstF5I	GGATG	2 cut(s)	389, 595
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	3 cut(s)	27, 85, 505
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 77, 328, 667
BstSCI	CCNGG	2 cut(s)	735, 736
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	4 cut(s)	137, 144, 699, 708
BstZ17I	GTATAC	1 cut(s)	676
BsuRI	GGCC	3 cut(s)	107, 703, 735
BtsCI	GGATG	2 cut(s)	389, 595
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	3 cut(s)	27, 85, 505
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	284, 734
Cfr9I	CCCGGG	1 cut(s)	736
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	1 cut(s)	586
DdeI	CTNAG	4 cut(s)	12, 516, 657, 711
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	2 cut(s)	238, 792
EarI	CTCTTC	2 cut(s)	238, 792
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	589
FaiI	YATR	8 cut(s)	315, 378, 396, 494, 558, 587, 636, 676
FatI	CATG	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	81, 105
FokI	GGATG	2 cut(s)	376, 602
Fsp4HI	GCNGC	2 cut(s)	81, 105
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	3 cut(s)	26, 84, 504
GluI	GCNGC	2 cut(s)	81, 105
GsuI	CTGGAG	3 cut(s)	94, 141, 344
HaeIII	GGCC	3 cut(s)	107, 703, 735
HapII	CCGG	2 cut(s)	245, 737
HhaI	GCGC	3 cut(s)	27, 85, 505
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	3 cut(s)	25, 83, 503
HinP1I	GCGC	3 cut(s)	25, 83, 503
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	9 cut(s)	37, 149, 182, 206, 401, 542, 567, 582, 763
HpaII	CCGG	2 cut(s)	245, 737
Hpy166II	GTNNAC	2 cut(s)	464, 676
Hpy188I	TCNGA	9 cut(s)	33, 298, 346, 368, 421, 517, 529, 628, 762
Hpy188III	TCNNGA	5 cut(s)	65, 96, 146, 158, 535
Hpy8I	GTNNAC	2 cut(s)	464, 676
HpyAV	CCTTC	3 cut(s)	238, 423, 557
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	197, 290, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 77, 328, 667
HpyF3I	CTNAG	4 cut(s)	12, 516, 657, 711
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	3 cut(s)	25, 83, 503
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	4 cut(s)	58, 151, 206, 337
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	685, 692
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MluCI	AATT	3 cut(s)	212, 263, 382
MlyI	GAGTC	6 cut(s)	158, 176, 200, 536, 576, 757
MnlI	CCTC	8 cut(s)	15, 19, 70, 118, 133, 604, 787, 795
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	522
MspI	CCGG	2 cut(s)	245, 737
MspR9I	CCNGG	2 cut(s)	737, 738
Mva1269I	GAATGC	1 cut(s)	290
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	4 cut(s)	22, 77, 328, 667
NciI	CCSGG	2 cut(s)	737, 738
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	685
NspV	TTCGAA	1 cut(s)	550
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	37, 401, 567
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	82, 106
PleI	GAGTC	6 cut(s)	157, 176, 200, 536, 576, 757
PpsI	GAGTC	6 cut(s)	157, 176, 200, 536, 576, 757
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	2 cut(s)	284, 734
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	2 cut(s)	81, 105
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	284, 734
SchI	GAGTC	6 cut(s)	158, 176, 200, 536, 576, 757
ScrFI	CCNGG	2 cut(s)	737, 738
SfaNI	GCATC	4 cut(s)	58, 151, 206, 337
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	738
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	212, 263, 382
SsiI	CCGC	2 cut(s)	104, 501
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	2 cut(s)	735, 736
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	468
TaqI	TCGA	5 cut(s)	190, 267, 536, 550, 766
TasI	AATT	3 cut(s)	212, 263, 382
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	37, 401, 567
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	1 cut(s)	497
TspMI	CCCGGG	1 cut(s)	736
TspRI	CASTG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	263
XmaI	CCCGGG	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.