RchiOBHm_Chr7g0194631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001194
Physical Location & Seq
Forward (+)
12665261 .. 12666624
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17404

Sequence Viewer

Length: 606 bp
ATGTTGAATGTATTGCCTACTCCTAATCTCACTGTGATTAGAGAGTTCTATGCTTGTTGCTCTCCAAATATGCATGCACAGGTTGATTTGGTTAATGCTGCTACTCTGATTGGATGCAATGTTGAAATTCGTGGTGTCTCAGTTCCTTTCACAGCCACCACCATCCGAGAAATATTGGGTCTCATTGCTCCTGTTTCCGAGATGTCTACGGTTGATAAGGAGCTTGCAGCTTTATTTGTTGATTCGGTCGTAGCTGAGACTTATGCGGATCGTCCAGATGCCACCCCCGAGGAGCTCTCTGCTGGTGCTCTCAGTGAGTTATGTCGATTGTTGGGGCATTTGGTTCGTACTTTGCTCTATCCTTCCACTCAGAGCAGCAAGATTACATTGGAGGAAGCCCGTCTCATTTATGTTCTCAATGCCAAGGGTCCCTATCTTCCTTTTGAGCATTACATGTATACTGCTATCCGAAGAGCTGCTGTCAAAGGTCGCCGTCACAAAAAGGCCGCCTTGGTTTTCCCCTCTGTGATTACTGCTGTTTGCAAGGCCAAGGGTGTTGTCTTTGAGGATTCTGATGAAATGGCTCCTCCCTTGAATGTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.95

Weight (kDa)

6.09

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 7 - 186 5.5e-18 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 206, 458
AciI CCGC 2 cut(s) 266, 507
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 3 cut(s) 7, 125, 595
AluBI AGCT 5 cut(s) 223, 230, 254, 295, 476
AluI AGCT 5 cut(s) 223, 230, 254, 295, 476
Alw21I GWGCWC 2 cut(s) 297, 310
Alw26I GTCTC 4 cut(s) 142, 185, 251, 407
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 504, 546
ApeKI GCWGC 4 cut(s) 98, 227, 375, 476
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 599
AspS9I GGNCC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 297, 310
BbvI GCAGC 4 cut(s) 85, 239, 387, 463
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 477
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BcoDI GTCTC 4 cut(s) 142, 185, 251, 407
BisI GCNGC 5 cut(s) 99, 228, 376, 477, 507
BlsI GCNGC 5 cut(s) 100, 229, 377, 478, 508
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 3 cut(s) 429, 430, 585
BmsI GCATC 2 cut(s) 104, 268
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 288, 423, 510, 549
Bse3DI GCAATG 2 cut(s) 124, 183
BseDI CCNNGG 4 cut(s) 288, 423, 510, 549
BseGI GGATG 2 cut(s) 119, 162
BseMI GCAATG 2 cut(s) 124, 183
BseMII CTCAG 4 cut(s) 153, 246, 325, 383
BseRI GAGGAG 2 cut(s) 305, 576
BseXI GCAGC 4 cut(s) 85, 239, 387, 463
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 506, 548
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 297, 310
BsiHKCI CYCGRG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 414
BsmAI GTCTC 4 cut(s) 142, 185, 251, 407
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 2 cut(s) 506, 548
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 297, 310
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 2 cut(s) 266, 507
BspANI GGCC 2 cut(s) 506, 548
BspCNI CTCAG 4 cut(s) 152, 247, 324, 382
BspLI GGNNCC 3 cut(s) 429, 430, 585
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 124, 183
BssECI CCNNGG 4 cut(s) 288, 423, 510, 549
BssMI GATC 1 cut(s) 268
BssNAI GTATAC 1 cut(s) 459
BssT1I CCWWGG 3 cut(s) 423, 510, 549
Bst1107I GTATAC 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 34, 211
Bst6I CTCTTC 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 75, 225
BstDEI CTNAG 4 cut(s) 139, 255, 311, 369
BstF5I GGATG 2 cut(s) 119, 162
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 4 cut(s) 142, 185, 251, 407
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 249
BstNSI RCATGY 2 cut(s) 77, 457
BstV1I GCAGC 4 cut(s) 85, 239, 387, 463
BstZ17I GTATAC 1 cut(s) 459
BsuRI GGCC 2 cut(s) 506, 548
BtsCI GGATG 2 cut(s) 119, 162
BtsIMutI CAGTG 2 cut(s) 30, 319
Cac8I GCNNGC 2 cut(s) 75, 225
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 348
CviAII CATG 2 cut(s) 74, 454
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 4 cut(s) 139, 255, 311, 369
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 3 cut(s) 423, 510, 549
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 428
EcoT14I CCWWGG 3 cut(s) 423, 510, 549
EcoT22I ATGCAT 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 3 cut(s) 423, 510, 549
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 2 cut(s) 77, 457
FaiI YATR 8 cut(s) 51, 71, 75, 264, 322, 411, 455, 459
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 414
FatI CATG 2 cut(s) 73, 453
FblI GTMKAC 2 cut(s) 206, 458
Fnu4HI GCNGC 5 cut(s) 99, 228, 376, 477, 507
FokI GGATG 2 cut(s) 126, 149
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 5 cut(s) 99, 228, 376, 477, 507
GluI GCNGC 5 cut(s) 99, 228, 376, 477, 507
HaeIII GGCC 2 cut(s) 506, 548
Hin1II CATG 2 cut(s) 77, 457
HinfI GANTC 2 cut(s) 242, 569
Hpy166II GTNNAC 2 cut(s) 207, 459
Hpy188I TCNGA 6 cut(s) 108, 167, 199, 372, 470, 574
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 207, 459
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 34, 211
HpyCH4V TGCA 5 cut(s) 73, 77, 117, 227, 543
HpyF3I CTNAG 4 cut(s) 139, 255, 311, 369
Hsp92II CATG 2 cut(s) 77, 457
KflI GGGWCCC 1 cut(s) 428
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 466
LmnI GCTCC 4 cut(s) 193, 220, 292, 589
LpnPI CCDG 4 cut(s) 65, 204, 288, 288
Lsp1109I GCAGC 4 cut(s) 85, 239, 387, 463
LweI GCATC 2 cut(s) 104, 268
MaeIII GTNAC 1 cut(s) 494
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 428, 483
MhlI GDGCHC 2 cut(s) 297, 310
MluCI AATT 1 cut(s) 126
MnlI CCTC 5 cut(s) 283, 385, 532, 559, 597
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 1 cut(s) 93
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 77, 457
NlaIV GGNNCC 3 cut(s) 429, 430, 585
NmuCI GTSAC 1 cut(s) 494
NsiI ATGCAT 1 cut(s) 75
NspI RCATGY 2 cut(s) 77, 457
PaeI GCATGC 1 cut(s) 77
PciI ACATGT 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 242, 569
PkrI GCNGC 5 cut(s) 100, 229, 377, 478, 508
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 428
PspN4I GGNNCC 3 cut(s) 429, 430, 585
PspPI GGNCC 1 cut(s) 428
PspPPI RGGWCCY 1 cut(s) 428
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SacI GAGCTC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 5 cut(s) 99, 228, 376, 477, 507
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 428
SduI GDGCHC 2 cut(s) 297, 310
SetI ASST 7 cut(s) 84, 225, 232, 256, 297, 478, 490
SfaNI GCATC 2 cut(s) 104, 268
SinI GGWCC 1 cut(s) 428
SphI GCATGC 1 cut(s) 77
Sse9I AATT 1 cut(s) 126
SsiI CCGC 2 cut(s) 266, 507
SspI AATATT 1 cut(s) 174
SstI GAGCTC 1 cut(s) 297
StyI CCWWGG 3 cut(s) 423, 510, 549
TaaI ACNGT 2 cut(s) 34, 211
TaqI TCGA 1 cut(s) 325
TaqII GACCGA 1 cut(s) 235
TasI AATT 1 cut(s) 126
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 2 cut(s) 242, 569
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 37, 319
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 4 cut(s) 98, 227, 375, 476
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 1 cut(s) 591
TspRI CASTG 2 cut(s) 37, 319
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 126
XceI RCATGY 2 cut(s) 77, 457
XmiI GTMKAC 2 cut(s) 206, 458
XmnI GAANNNNTTC 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.