FvH4_3g08352

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001194
Physical Location & Seq
Reverse (-)
4882882 .. 4883591
710 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08352.t1

Sequence Viewer

Length: 630 bp
ATGGCTGAACCAAACCAAAACTCTGCTGTAAAAGAAACCGGGTCAGTGACTTCTCCAATGGTTTCTTCTTCACTCCCAGCGAATTCTGATCCCCTGCTTACTGCTTCTCAAGTGTTGAGAGCCTTCTCTTCCTCTCCGAGTTCTACTCCCATCTCCTCCGCTGTTGCTACTCCATCCCTTGTCCCTGTACAAGTGGATTCCACTATCATTACACCTCAACCCTCCCCTAAAGAGGTTGAAGCCTCCATCACTGCAACATTGAATGAAATTAGGAAGAGAAAGGGCACCATTCATGCTGGGTCTGCTCGGGCCAAGAAGATCTTCTGGCATGGGTCGCACTCAAGGGATTCTCGATGCCCTTGCATCCCGATCCCAGGGATTTGCCAAGTCCGGCCCATCCTCCACCGGCGCCGCCCCCAACTTTGCCAAGGCACCACTTCCCAAGTTCTGATCCGGAATTTCGCGCTCCTCGCCGTCGAATCACCAGGAACTCTGGCAAGCCAATCGCCGGCTCTTCTAAATCTGGATCGAAGGATTCCTCTGGACCTTCCAAACCTTCCAAAGCCAAGCCTATTGGAGCCCAGGATGGGAGACCCTCTTTGCCTCTTAAGAAAAGGATGTTTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.39

Weight (kDa)

10.06

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 284, 408, 431
AccII CGCG 1 cut(s) 464
AccIII TCCGGA 1 cut(s) 453
AciI CCGC 2 cut(s) 159, 412
AclWI GGATC 4 cut(s) 83, 364, 445, 534
AcsI RAATTY 2 cut(s) 82, 457
AcyI GRCGYC 1 cut(s) 409
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 232, 374, 508, 587
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 2 cut(s) 239, 262
AjnI CCWGG 3 cut(s) 373, 484, 581
AjuI GAANNNNNNNTTGG 4 cut(s) 49, 81, 305, 337
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 4 cut(s) 83, 364, 445, 534
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 2 cut(s) 309, 392
ApoI RAATTY 2 cut(s) 82, 457
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 411, 466
AspS9I GGNCC 3 cut(s) 309, 393, 544
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 474
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 3 cut(s) 284, 408, 431
BanII GRGCYC 1 cut(s) 582
BccI CCATC 5 cut(s) 158, 181, 254, 404, 580
BceAI ACGGC 1 cut(s) 458
BcgI CGANNNNNNTGC 4 cut(s) 342, 376, 486, 520
BciT130I CCWGG 3 cut(s) 375, 486, 583
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 412
BfrI CTTAAG 1 cut(s) 607
BglII AGATCT 1 cut(s) 318
BisI GCNGC 1 cut(s) 412
BlsI GCNGC 1 cut(s) 413
Bme1390I CCNGG 4 cut(s) 40, 375, 486, 583
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 3 cut(s) 309, 393, 544
BmiI GGNNCC 4 cut(s) 286, 410, 433, 579
BmrFI CCNGG 4 cut(s) 40, 375, 486, 583
BmsI GCATC 2 cut(s) 344, 372
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpuEI CTTGAG 2 cut(s) 93, 325
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 409
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 4 cut(s) 373, 374, 427, 581
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 374, 508, 587
Bse118I RCCGGY 2 cut(s) 405, 508
BseAI TCCGGA 1 cut(s) 453
BseBI CCWGG 3 cut(s) 375, 486, 583
BseDI CCNNGG 4 cut(s) 373, 374, 427, 581
BseGI GGATG 5 cut(s) 173, 363, 396, 591, 623
BseLI CCNNNNNNNGG 4 cut(s) 232, 374, 508, 587
BseRI GAGGAG 2 cut(s) 145, 458
BseSI GKGCMC 1 cut(s) 287
BseYI CCCAGC 2 cut(s) 76, 296
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 2 cut(s) 311, 394
BshNI GGYRCC 3 cut(s) 284, 408, 431
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 5 cut(s) 39, 391, 406, 454, 509
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 4 cut(s) 232, 374, 508, 587
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 2 cut(s) 311, 394
Bso31I GGTCTC 1 cut(s) 585
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 287, 582
Bsp13I TCCGGA 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 5 cut(s) 88, 318, 369, 450, 526
BspACI CCGC 2 cut(s) 159, 412
BspANI GGCC 2 cut(s) 311, 394
BspEI TCCGGA 1 cut(s) 453
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 4 cut(s) 286, 410, 433, 579
BspPI GGATC 4 cut(s) 83, 364, 445, 534
BspQI GCTCTTC 1 cut(s) 519
BspT107I GGYRCC 3 cut(s) 284, 408, 431
BspTI CTTAAG 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 585
BsrFI RCCGGY 2 cut(s) 405, 508
BsrGI TGTACA 1 cut(s) 187
BssAI RCCGGY 2 cut(s) 405, 508
BssECI CCNNGG 4 cut(s) 373, 374, 427, 581
BssMI GATC 5 cut(s) 88, 318, 369, 450, 526
BssNI GRCGYC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 3 cut(s) 375, 486, 583
Bst6I CTCTTC 3 cut(s) 133, 269, 519
BstACI GRCGYC 1 cut(s) 409
BstAFI CTTAAG 1 cut(s) 607
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 499, 510
BstF5I GGATG 5 cut(s) 173, 363, 396, 591, 623
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 2 cut(s) 411, 466
BstKTI GATC 5 cut(s) 91, 321, 372, 453, 529
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 5 cut(s) 88, 318, 369, 450, 526
BstMWI GCNNNNNNNGC 3 cut(s) 302, 334, 470
BstNI CCWGG 3 cut(s) 375, 486, 583
BstSCI CCNGG 4 cut(s) 38, 373, 484, 581
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BsuRI GGCC 2 cut(s) 311, 394
BtsCI GGATG 5 cut(s) 173, 363, 396, 591, 623
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 51, 249
Cac8I GCNNGC 2 cut(s) 499, 510
CfoI GCGC 2 cut(s) 411, 466
Cfr10I RCCGGY 2 cut(s) 405, 508
Cfr13I GGNCC 3 cut(s) 309, 393, 544
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 293, 329
CviQI GTAC 1 cut(s) 188
DinI GGCGCC 1 cut(s) 410
DpnI GATC 5 cut(s) 90, 320, 371, 452, 528
DpnII GATC 5 cut(s) 88, 318, 369, 450, 526
Eam1104I CTCTTC 3 cut(s) 133, 269, 519
EarI CTCTTC 3 cut(s) 133, 269, 519
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 373, 484, 581
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 582
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 2 cut(s) 296, 332
FaiI YATR 2 cut(s) 294, 330
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 292, 328
Fnu4HI GCNGC 1 cut(s) 412
FokI GGATG 4 cut(s) 160, 350, 383, 598
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 1 cut(s) 412
GlaI GCGC 2 cut(s) 410, 465
GluI GCNGC 1 cut(s) 412
GsaI CCCAGC 2 cut(s) 80, 300
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 311, 394
HapII CCGG 5 cut(s) 39, 391, 406, 454, 509
HhaI GCGC 2 cut(s) 411, 466
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 2 cut(s) 296, 332
Hin6I GCGC 2 cut(s) 409, 464
HinP1I GCGC 2 cut(s) 409, 464
HinfI GANTC 4 cut(s) 197, 347, 479, 535
HpaII CCGG 5 cut(s) 39, 391, 406, 454, 509
HphI GGTGA 1 cut(s) 474
Hpy188I TCNGA 3 cut(s) 88, 138, 450
Hpy188III TCNNGA 5 cut(s) 351, 367, 454, 524, 542
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 4 cut(s) 133, 525, 557, 566
HpyCH4V TGCA 2 cut(s) 254, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 334, 470
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 2 cut(s) 296, 332
HspAI GCGC 2 cut(s) 409, 464
KasI GGCGCC 1 cut(s) 408
Kpn2I TCCGGA 1 cut(s) 453
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Kzo9I GATC 5 cut(s) 88, 318, 369, 450, 526
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 2 cut(s) 471, 577
LweI GCATC 2 cut(s) 344, 372
MaeIII GTNAC 1 cut(s) 46
MalI GATC 5 cut(s) 90, 320, 371, 452, 528
MboI GATC 5 cut(s) 88, 318, 369, 450, 526
MboII GAAGA 7 cut(s) 57, 60, 120, 286, 313, 328, 506
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 287, 582
MluCI AATT 3 cut(s) 82, 267, 457
Mly113I GGCGCC 1 cut(s) 409
MroI TCCGGA 1 cut(s) 453
MroNI GCCGGC 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 161
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 5 cut(s) 39, 391, 406, 454, 509
MspR9I CCNGG 4 cut(s) 40, 375, 486, 583
MvaI CCWGG 3 cut(s) 375, 486, 583
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 3 cut(s) 302, 334, 470
NaeI GCCGGC 1 cut(s) 510
NarI GGCGCC 1 cut(s) 409
NciI CCSGG 1 cut(s) 40
NdeII GATC 5 cut(s) 88, 318, 369, 450, 526
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 2 cut(s) 296, 332
NlaIV GGNNCC 4 cut(s) 286, 410, 433, 579
NmuCI GTSAC 1 cut(s) 46
PasI CCCWGGG 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 197, 347, 479, 535
PkrI GCNGC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 412
Psp6I CCWGG 3 cut(s) 373, 484, 581
PspFI CCCAGC 2 cut(s) 76, 296
PspGI CCWGG 3 cut(s) 373, 484, 581
PspN4I GGNNCC 4 cut(s) 286, 410, 433, 579
PspPI GGNCC 3 cut(s) 309, 393, 544
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 1 cut(s) 412
Sau3AI GATC 5 cut(s) 88, 318, 369, 450, 526
Sau96I GGNCC 3 cut(s) 309, 393, 544
ScrFI CCNGG 4 cut(s) 40, 375, 486, 583
SduI GDGCHC 2 cut(s) 287, 582
SetI ASST 5 cut(s) 217, 237, 549, 558, 629
SfaNI GCATC 2 cut(s) 344, 372
SfoI GGCGCC 1 cut(s) 410
SgrAI CRCCGGYG 1 cut(s) 405
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 3 cut(s) 108, 340, 607
SmoI CTYRAG 3 cut(s) 108, 340, 607
Sse9I AATT 3 cut(s) 82, 267, 457
SsiI CCGC 2 cut(s) 159, 412
SspDI GGCGCC 1 cut(s) 408
StyD4I CCNGG 4 cut(s) 38, 373, 484, 581
StyI CCWWGG 1 cut(s) 427
TaqI TCGA 3 cut(s) 352, 477, 529
TasI AATT 3 cut(s) 82, 267, 457
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 4 cut(s) 197, 347, 479, 535
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 2 cut(s) 51, 256
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 279, 281
TspRI CASTG 2 cut(s) 51, 256
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 2 cut(s) 82, 457
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.