Rroxscaffold_7G00196670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001194
Physical Location & Seq
Reverse (-)
39733126 .. 39742138
9013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196670.1

Sequence Viewer

Length: 810 bp
ATGACAAGGGTCCTTACATCCCTCCCGAGTATTACATGTACAAGGCCTTCGGAAAGGCTGTCGTTGAGGGTCACGCGTCACAAAAAGGCCACCTTAGTCTTCCCCTTTGTCATCATTGCCATTTGCAAAGCCAAGGGCATTCGGTTTGATGATGTTGATGAAATGGCCCCACCCTTGAAAGTATTCTCTCATAGTTCTCTCAATCGCAACACAAGTCAAGGCAAGACCAAAGGCGTTTCCGTTGAAACCACCTCTATTTCTCACCTCTTGCGCGATCACTTCACCGTGGTGAACGAGAAAATTGGATCAACTTCGGATCGATGTGAGGACATTTTGAGCTTGTTCTTGGGCTCTCCTAGTCCGCCCAGGTATCCTAGTGTCATCGGGACTCCTTATTTTTCGCCATTTTCCTTATTTTTCCGATCAAGCTTCCTAGTTGACTCGGAGTCTTGCTTTGCCAAAGTTTCCTATTCTAAACAGGATTTCCTGGTTGGACCAAGAAAACAGAACGCGAGGGAGGAACGCAAGGAGAAGGCGGCGGAGGCACAAAGACGGTTGGCTACGGCGATGTCGCGTTTTGATGAACGAAGAGGACGGCGGGAGCTACCACCAATCCAGCGCAAAGCGAACGGTCACGTAGCACCGGGCGTAGTCGACCCGGCGCCGGCGCATTGGTGCCGGGAGCCGGTCATACGGATACGGTACCGGCGGACCCACGAGTTATTAGGGAGAGGACCACCACCCATCCCCCAACTAATGTTGGAGCGAGAGGCGGAATCACCGCCGCGCACCAACCGCTCGGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.41

Weight (kDa)

10.36

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 3 cut(s) 661, 675, 702
AccBSI CCGCTC 1 cut(s) 798
AccI GTMKAC 1 cut(s) 654
AccII CGCG 5 cut(s) 76, 273, 512, 574, 787
AciI CCGC 9 cut(s) 362, 536, 539, 598, 709, 773, 782, 785, 796
AclWI GGATC 2 cut(s) 313, 324
AcyI GRCGYC 1 cut(s) 662
AfaI GTAC 2 cut(s) 40, 704
AfiI CCNNNNNNNGG 2 cut(s) 664, 685
AflIII ACRYGT 2 cut(s) 35, 74
AgsI TTSAA 2 cut(s) 178, 245
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 2 cut(s) 365, 486
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 3 cut(s) 339, 429, 604
AluI AGCT 3 cut(s) 339, 429, 604
AlwI GGATC 2 cut(s) 313, 324
Ama87I CYCGRG 2 cut(s) 25, 799
AoxI GGCC 3 cut(s) 44, 87, 165
Asp700I GAANNNNTTC 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 702
AspLEI GCGC 5 cut(s) 273, 621, 664, 670, 789
AspS9I GGNCC 5 cut(s) 10, 166, 494, 711, 734
AsuC2I CCSGG 3 cut(s) 645, 659, 680
AsuHPI GGTGA 4 cut(s) 254, 274, 301, 771
AvaI CYCGRG 2 cut(s) 25, 799
AvaII GGWCC 4 cut(s) 10, 494, 711, 734
BanI GGYRCC 3 cut(s) 661, 675, 702
BanII GRGCYC 1 cut(s) 353
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BauI CACGAG 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 91
BccI CCATC 1 cut(s) 752
BceAI ACGGC 2 cut(s) 579, 611
BciT130I CCWGG 2 cut(s) 367, 488
BciVI GTATCC 2 cut(s) 381, 690
BcnI CCSGG 3 cut(s) 645, 659, 680
BfaI CTAG 3 cut(s) 357, 375, 434
BfoI RGCGCY 1 cut(s) 665
BfuI GTATCC 2 cut(s) 381, 690
BisI GCNGC 2 cut(s) 537, 785
BlsI GCNGC 2 cut(s) 538, 786
Bme1390I CCNGG 5 cut(s) 367, 488, 645, 659, 680
Bme18I GGWCC 4 cut(s) 10, 494, 711, 734
BmeRI GACNNNNNGTC 1 cut(s) 445
BmeT110I CYCGRG 2 cut(s) 25, 799
BmgT120I GGNCC 5 cut(s) 10, 166, 494, 711, 734
BmiI GGNNCC 7 cut(s) 11, 168, 663, 677, 684, 704, 713
BmrFI CCNGG 5 cut(s) 367, 488, 645, 659, 680
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 91
BpuMI CCSGG 3 cut(s) 645, 659, 680
Bsa29I ATCGAT 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 637
BsaHI GRCGYC 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 132, 285, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 664, 685
Bse118I RCCGGY 3 cut(s) 664, 685, 705
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 367, 488
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 3 cut(s) 132, 285, 365
BseGI GGATG 2 cut(s) 17, 744
BseLI CCNNNNNNNGG 2 cut(s) 664, 685
BseMI GCAATG 1 cut(s) 114
Bsh1236I CGCG 5 cut(s) 76, 273, 512, 574, 787
BshFI GGCC 3 cut(s) 46, 89, 167
BshNI GGYRCC 3 cut(s) 661, 675, 702
BshVI ATCGAT 1 cut(s) 319
BsiHKCI CYCGRG 2 cut(s) 25, 799
BsiSI CCGG 6 cut(s) 644, 659, 665, 679, 686, 706
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 664, 685
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 3 cut(s) 46, 89, 167
BsoBI CYCGRG 2 cut(s) 25, 799
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 38
Bsp143I GATC 4 cut(s) 274, 305, 316, 422
BspACI CCGC 9 cut(s) 362, 536, 539, 598, 709, 773, 782, 785, 796
BspANI GGCC 3 cut(s) 46, 89, 167
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 5 cut(s) 76, 273, 512, 574, 787
BspLI GGNNCC 7 cut(s) 11, 168, 663, 677, 684, 704, 713
BspPI GGATC 2 cut(s) 313, 324
BspT107I GGYRCC 3 cut(s) 661, 675, 702
BsrBI CCGCTC 1 cut(s) 798
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 3 cut(s) 664, 685, 705
BsrGI TGTACA 1 cut(s) 38
BssAI RCCGGY 3 cut(s) 664, 685, 705
BssECI CCNNGG 3 cut(s) 132, 285, 365
BssMI GATC 4 cut(s) 274, 305, 316, 422
BssNI GRCGYC 1 cut(s) 662
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 716
Bst2UI CCWGG 2 cut(s) 367, 488
Bst4CI ACNGT 4 cut(s) 286, 555, 632, 702
Bst6I CTCTTC 1 cut(s) 583
BstACI GRCGYC 1 cut(s) 662
BstAUI TGTACA 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 1 cut(s) 94
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 17, 744
BstFNI CGCG 5 cut(s) 76, 273, 512, 574, 787
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 5 cut(s) 273, 621, 664, 670, 789
BstKTI GATC 4 cut(s) 277, 308, 319, 425
BstMBI GATC 4 cut(s) 274, 305, 316, 422
BstMWI GCNNNNNNNGC 2 cut(s) 542, 795
BstNI CCWGG 2 cut(s) 367, 488
BstNSI RCATGY 1 cut(s) 39
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 5 cut(s) 365, 486, 643, 657, 678
BstUI CGCG 5 cut(s) 76, 273, 512, 574, 787
BstV2I GAAGAC 1 cut(s) 91
Bsu15I ATCGAT 1 cut(s) 319
BsuI GTATCC 2 cut(s) 381, 690
BsuRI GGCC 3 cut(s) 46, 89, 167
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 581
BtsCI GGATG 2 cut(s) 17, 744
Cac8I GCNNGC 1 cut(s) 666
CfoI GCGC 5 cut(s) 273, 621, 664, 670, 789
Cfr10I RCCGGY 3 cut(s) 664, 685, 705
Cfr13I GGNCC 5 cut(s) 10, 166, 494, 711, 734
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 39, 703
CviAII CATG 1 cut(s) 36
CviQI GTAC 2 cut(s) 39, 703
DdeI CTNAG 1 cut(s) 94
DinI GGCGCC 1 cut(s) 663
DpnI GATC 4 cut(s) 276, 307, 318, 424
DpnII GATC 4 cut(s) 274, 305, 316, 422
DriI GACNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 583
EciI GGCGGA 4 cut(s) 351, 554, 724, 788
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 4 cut(s) 10, 494, 711, 734
Eco88I CYCGRG 2 cut(s) 25, 799
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 365, 486
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 353
EgeI GGCGCC 1 cut(s) 663
EheI GGCGCC 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 39
FaiI YATR 3 cut(s) 37, 192, 692
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 35
FauI CCCGC 1 cut(s) 591
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 537, 785
FokI GGATG 2 cut(s) 4, 731
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 537, 785
FspBI CTAG 3 cut(s) 357, 375, 434
GlaI GCGC 5 cut(s) 272, 620, 663, 669, 788
GluI GCNGC 2 cut(s) 537, 785
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 3 cut(s) 46, 89, 167
HapII CCGG 6 cut(s) 644, 659, 665, 679, 686, 706
HgaI GACGC 1 cut(s) 65
HhaI GCGC 5 cut(s) 273, 621, 664, 670, 789
Hin1I GRCGYC 1 cut(s) 662
Hin1II CATG 1 cut(s) 39
Hin6I GCGC 5 cut(s) 271, 619, 662, 668, 787
HinP1I GCGC 5 cut(s) 271, 619, 662, 668, 787
HincII GTYRAC 2 cut(s) 439, 655
HindII GTYRAC 2 cut(s) 439, 655
HindIII AAGCTT 1 cut(s) 427
HinfI GANTC 4 cut(s) 388, 440, 446, 776
HpaII CCGG 6 cut(s) 644, 659, 665, 679, 686, 706
HphI GGTGA 4 cut(s) 254, 274, 301, 771
Hpy166II GTNNAC 3 cut(s) 292, 439, 655
Hpy188I TCNGA 4 cut(s) 52, 316, 422, 445
Hpy188III TCNNGA 3 cut(s) 25, 385, 801
Hpy8I GTNNAC 3 cut(s) 292, 439, 655
HpyAV CCTTC 2 cut(s) 57, 526
HpyCH4III ACNGT 4 cut(s) 286, 555, 632, 702
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 795
HpyF3I CTNAG 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 636
Hsp92I GRCGYC 1 cut(s) 662
Hsp92II CATG 1 cut(s) 39
HspAI GCGC 5 cut(s) 271, 619, 662, 668, 787
KasI GGCGCC 1 cut(s) 661
KpnI GGTACC 1 cut(s) 706
KroI GCCGGC 1 cut(s) 664
KroNI GCCGGC 1 cut(s) 666
Kzo9I GATC 4 cut(s) 274, 305, 316, 422
LmnI GCTCC 3 cut(s) 601, 682, 763
MaeI CTAG 3 cut(s) 357, 375, 434
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 3 cut(s) 70, 77, 632
MalI GATC 4 cut(s) 276, 307, 318, 424
MbiI CCGCTC 1 cut(s) 798
MboI GATC 4 cut(s) 274, 305, 316, 422
MboII GAAGA 2 cut(s) 91, 600
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 300
MluI ACGCGT 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 662
MlyI GAGTC 3 cut(s) 382, 434, 455
MmeI TCCRAC 2 cut(s) 472, 741
MreI CGCCGGCG 1 cut(s) 664
MroNI GCCGGC 1 cut(s) 664
MroXI GAANNNNTTC 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 6 cut(s) 644, 659, 665, 679, 686, 706
MspR9I CCNGG 5 cut(s) 367, 488, 645, 659, 680
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 2 cut(s) 367, 488
MvnI CGCG 5 cut(s) 76, 273, 512, 574, 787
MwoI GCNNNNNNNGC 2 cut(s) 542, 795
NaeI GCCGGC 1 cut(s) 666
NarI GGCGCC 1 cut(s) 662
NciI CCSGG 3 cut(s) 645, 659, 680
NdeII GATC 4 cut(s) 274, 305, 316, 422
NgoMIV GCCGGC 1 cut(s) 664
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 7 cut(s) 11, 168, 663, 677, 684, 704, 713
NmuCI GTSAC 3 cut(s) 70, 77, 632
NspI RCATGY 1 cut(s) 39
OliI CACNNNNGTG 1 cut(s) 287
PceI AGGCCT 1 cut(s) 46
PciI ACATGT 1 cut(s) 35
PctI GAATGC 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 776
PkrI GCNGC 2 cut(s) 538, 786
PleI GAGTC 3 cut(s) 382, 434, 454
PluTI GGCGCC 1 cut(s) 665
PpsI GAGTC 3 cut(s) 382, 434, 454
Ppu21I YACGTR 1 cut(s) 637
PpuMI RGGWCCY 1 cut(s) 10
PscI ACATGT 1 cut(s) 35
PshAI GACNNNNGTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 365, 486
PspGI CCWGG 2 cut(s) 365, 486
PspN4I GGNNCC 7 cut(s) 11, 168, 663, 677, 684, 704, 713
PspPI GGNCC 5 cut(s) 10, 166, 494, 711, 734
PspPPI RGGWCCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 40, 704
RsaNI GTAC 2 cut(s) 39, 703
RseI CAYNNNNRTG 1 cut(s) 287
SalI GTCGAC 1 cut(s) 653
SatI GCNGC 2 cut(s) 537, 785
Sau3AI GATC 4 cut(s) 274, 305, 316, 422
Sau96I GGNCC 5 cut(s) 10, 166, 494, 711, 734
SchI GAGTC 3 cut(s) 382, 434, 455
ScrFI CCNGG 5 cut(s) 367, 488, 645, 659, 680
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 95, 254, 267, 341, 371, 431, 606, 639
SfoI GGCGCC 1 cut(s) 663
SgrAI CRCCGGYG 1 cut(s) 664
SinI GGWCC 4 cut(s) 10, 494, 711, 734
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 1 cut(s) 300
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 9 cut(s) 362, 536, 539, 598, 709, 773, 782, 785, 796
SspDI GGCGCC 1 cut(s) 661
SspMI CTAG 3 cut(s) 357, 375, 434
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 5 cut(s) 365, 486, 643, 657, 678
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 4 cut(s) 286, 555, 632, 702
TaiI ACGT 1 cut(s) 639
TaqI TCGA 2 cut(s) 319, 654
TasI AATT 1 cut(s) 300
TatI WGTACW 1 cut(s) 38
TauI GCSGC 2 cut(s) 539, 787
TfiI GAWTC 1 cut(s) 776
TseFI GTSAC 3 cut(s) 70, 77, 632
Tsp45I GTSAC 3 cut(s) 70, 77, 632
TspDTI ATGAA 2 cut(s) 174, 597
TspGWI ACGGA 2 cut(s) 229, 709
VpaK11BI GGWCC 4 cut(s) 10, 494, 711, 734
XceI RCATGY 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 3 cut(s) 357, 375, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.