Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Forward (+)

32967847 .. 32970404

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCCAGGATACTAAGGGAGTTTGAGCGCCGCAGAGATGAGGATTCTTCTGGCTCTTCCACTGCTTCTGCTCAGTATACACCTGCCTCCTCTGATCCTGGTGATAAGGAGAGTGAGAGTGATGATGATCCTTTTTGGCCCTCCGTACCTTCACTTGTTCTTAAGGTGTTTGTGCAGGGTTTCGAGGGACCAGTTGATTCCTTGGACACTGACTTTGAAGAGCTTCCGACCGGGTTGCCGGAATTCCTGGATTGGAAACTTGGACTGTTTCAAAACCTTGGGGAGCTGACCCTTGGCGGATCTAGAAGCAGCGCCGGTGGAGGATGGACCGGACTTGCAAATCCTTGGGATCGGGATGCAAGGGCATTGAGAATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.8

Weight (kDa)

4.28

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	77
AciI	CCGC	2 cut(s)	31, 297
AclWI	GGATC	4 cut(s)	89, 122, 307, 357
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	218, 272
AjnI	CCWGG	3 cut(s)	5, 97, 246
AluBI	AGCT	2 cut(s)	223, 286
AluI	AGCT	2 cut(s)	223, 286
AlwI	GGATC	4 cut(s)	89, 122, 307, 357
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	30, 314
AspS9I	GGNCC	3 cut(s)	138, 188, 327
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	188, 327
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	1 cut(s)	318
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	3 cut(s)	7, 99, 248
BciVI	GTATCC	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	232
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	2 cut(s)	31, 315
BfrI	CTTAAG	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	3
BisI	GCNGC	2 cut(s)	31, 310
BlsI	GCNGC	2 cut(s)	32, 311
Bme1390I	CCNGG	4 cut(s)	7, 99, 232, 248
Bme18I	GGWCC	2 cut(s)	188, 327
BmgT120I	GGNCC	3 cut(s)	138, 188, 327
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	4 cut(s)	7, 99, 232, 248
BmsI	GCATC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	5 cut(s)	5, 201, 277, 292, 344
BsaWI	WCCGGW	1 cut(s)	329
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	7, 99, 248
BseDI	CCNNGG	5 cut(s)	5, 201, 277, 292, 344
BseGI	GGATG	2 cut(s)	329, 361
BseJI	GATNNNNATC	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	231, 239, 315, 330
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	94, 127, 299, 349
BspACI	CCGC	2 cut(s)	31, 297
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	4 cut(s)	89, 122, 307, 357
BspQI	GCTCTTC	2 cut(s)	61, 213
BspTI	CTTAAG	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	5 cut(s)	5, 201, 277, 292, 344
BssMI	GATC	4 cut(s)	94, 127, 299, 349
BssNAI	GTATAC	1 cut(s)	78
BssT1I	CCWWGG	4 cut(s)	201, 277, 292, 344
Bst1107I	GTATAC	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	7, 99, 248
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	61, 213
BstAFI	CTTAAG	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	14, 72
BstF5I	GGATG	2 cut(s)	329, 361
BstH2I	RGCGCY	2 cut(s)	31, 315
BstHHI	GCGC	2 cut(s)	30, 314
BstKTI	GATC	4 cut(s)	97, 130, 302, 352
BstMBI	GATC	4 cut(s)	94, 127, 299, 349
BstMCI	CGRYCG	1 cut(s)	231
BstNI	CCWGG	3 cut(s)	7, 99, 248
BstSCI	CCNGG	4 cut(s)	5, 97, 230, 246
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BstZ17I	GTATAC	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	329, 361
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 207
BveI	ACCTGC	1 cut(s)	91
CfoI	GCGC	2 cut(s)	30, 314
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	138, 188, 327
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	4 cut(s)	54, 139, 223, 286
CviKI_1	RGCY	4 cut(s)	54, 139, 223, 286
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	14, 72
DpnI	GATC	4 cut(s)	96, 129, 301, 351
DpnII	GATC	4 cut(s)	94, 127, 299, 349
Eam1104I	CTCTTC	2 cut(s)	61, 213
EarI	CTCTTC	2 cut(s)	61, 213
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	4 cut(s)	201, 277, 292, 344
Eco47I	GGWCC	2 cut(s)	188, 327
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	3 cut(s)	5, 97, 246
EcoT14I	CCWWGG	4 cut(s)	201, 277, 292, 344
ErhI	CCWWGG	4 cut(s)	201, 277, 292, 344
FaiI	YATR	1 cut(s)	78
FaqI	GGGAC	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	31, 310
FokI	GGATG	2 cut(s)	336, 368
Fsp4HI	GCNGC	2 cut(s)	31, 310
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	29, 313
GluI	GCNGC	2 cut(s)	31, 310
HaeII	RGCGCY	2 cut(s)	31, 315
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	4 cut(s)	231, 239, 315, 330
HhaI	GCGC	2 cut(s)	30, 314
Hin6I	GCGC	2 cut(s)	28, 312
HinP1I	GCGC	2 cut(s)	28, 312
HinfI	GANTC	3 cut(s)	44, 197, 372
HpaII	CCGG	4 cut(s)	231, 239, 315, 330
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	94, 228
Hpy188III	TCNNGA	2 cut(s)	303, 353
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	175, 338, 359
HpyF3I	CTNAG	2 cut(s)	14, 72
HspAI	GCGC	2 cut(s)	28, 312
Kzo9I	GATC	4 cut(s)	94, 127, 299, 349
LguI	GCTCTTC	2 cut(s)	61, 213
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	303
MalI	GATC	4 cut(s)	96, 129, 301, 351
MboI	GATC	4 cut(s)	94, 127, 299, 349
MboII	GAAGA	3 cut(s)	39, 48, 230
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	6 cut(s)	34, 97, 100, 151, 178, 314
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	162, 379
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	4 cut(s)	231, 239, 315, 330
MspR9I	CCNGG	4 cut(s)	7, 99, 232, 248
MvaI	CCWGG	3 cut(s)	7, 99, 248
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	94, 127, 299, 349
NlaIV	GGNNCC	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	91
PciSI	GCTCTTC	2 cut(s)	61, 213
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	44, 197, 372
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	32, 311
Psp6I	CCWGG	3 cut(s)	5, 97, 246
PspGI	CCWGG	3 cut(s)	5, 97, 246
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	3 cut(s)	138, 188, 327
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SapI	GCTCTTC	2 cut(s)	61, 213
SaqAI	TTAA	2 cut(s)	162, 379
SatI	GCNGC	2 cut(s)	31, 310
Sau3AI	GATC	4 cut(s)	94, 127, 299, 349
Sau96I	GGNCC	3 cut(s)	138, 188, 327
ScrFI	CCNGG	4 cut(s)	7, 99, 232, 248
SetI	ASST	6 cut(s)	85, 151, 168, 225, 279, 288
SfaNI	GCATC	1 cut(s)	346
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	188, 327
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	2 cut(s)	31, 297
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	5, 97, 230, 246
StyI	CCWWGG	4 cut(s)	201, 277, 292, 344
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	242
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	3 cut(s)	44, 197, 372
Tru1I	TTAA	2 cut(s)	162, 379
Tru9I	TTAA	2 cut(s)	162, 379
TscAI	CASTG	2 cut(s)	67, 214
TseI	GCWGC	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	67, 214
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	188, 327
XapI	RAATTY	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.