Rmu_co7970978.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7970978.1
OG0001194
Physical Location & Seq
Reverse (-)
217 .. 456
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7970978.1_g000001.1.cds

Sequence Viewer

Length: 240 bp
atggcacctcctttgaaagttttctcccggagttctctccttcgcagctccagtcaaagcaagaccaagggtgtctctgttgacatcacttctatctctcggagcttgcttgaccatttcacagtggtcaaccgcaagttggatcagcttcagactgacgtgggtgctcttcttcagcgcgtggatcatcttaagggggagtttcactctcttcgtgacgatattggcgtttcttcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.71

Weight (kDa)

9.81

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 133
AclWI GGATC 2 cut(s) 150, 192
AcuI CTGAAG 2 cut(s) 134, 158
AfiI CCNNNNNNNGG 1 cut(s) 139
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 16
AjiI CACGTC 1 cut(s) 160
AluBI AGCT 3 cut(s) 48, 105, 148
AluI AGCT 3 cut(s) 48, 105, 148
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 150, 192
ApeKI GCWGC 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 79
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 28
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 142, 184
BspACI CCGC 1 cut(s) 133
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 150, 192
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 2 cut(s) 142, 184
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 174, 216
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 107
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 145, 187
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 142, 184
BstSCI CCNGG 1 cut(s) 26
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 57
BtrI CACGTC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 180
CviJI RGCY 3 cut(s) 48, 105, 148
CviKI_1 RGCY 3 cut(s) 48, 105, 148
DpnI GATC 2 cut(s) 144, 186
DpnII GATC 2 cut(s) 142, 184
Eam1104I CTCTTC 2 cut(s) 174, 216
EarI CTCTTC 2 cut(s) 174, 216
Eco130I CCWWGG 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 134, 158
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 34
HapII CCGG 1 cut(s) 28
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 2 cut(s) 82, 130
HindII GTYRAC 2 cut(s) 82, 130
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 82, 130
Hpy188I TCNGA 2 cut(s) 102, 153
Hpy188III TCNNGA 2 cut(s) 215, 237
Hpy8I GTNNAC 2 cut(s) 82, 130
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 159
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 142, 184
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 53, 102
LpnPI CCDG 2 cut(s) 41, 64
Lsp1109I GCAGC 1 cut(s) 57
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 144, 186
MboI GATC 2 cut(s) 142, 184
MboII GAAGA 4 cut(s) 161, 164, 203, 225
MhlI GDGCHC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 28
MvnI CGCG 1 cut(s) 180
NciI CCSGG 1 cut(s) 28
NdeII GATC 2 cut(s) 142, 184
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 20
PfoI TCCNGGA 1 cut(s) 26
PkrI GCNGC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 6
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 142, 184
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 169
SetI ASST 5 cut(s) 10, 50, 107, 150, 162
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SsiI CCGC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 162
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 215
TspRI CASTG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.