FvH4_7g12561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001194
Physical Location & Seq
Forward (+)
11384688 .. 11386199
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12561.t1

Sequence Viewer

Length: 1200 bp
ATGTCGAACAAGCCTGTTGGGCCAAATTTTGTCAATCTTGGGGAGGAACCCACCATGCAGGAACCCCTAAACCTGCTTCCCATCCAGGCTGAAGTGCCTATCTCTGGAGGTCAATCTCTTCGGCTTACTGCTACCCCTGGCGGTCCATCCATAGCAGACAAGCTTGAAGCTCTAAGAGACCCAGTTTCTCCTCCCGCTCTGGGTAAGAGGCCTCGCTCTCCCTCCGGTGACAAACCGGTCAAGGTCGCTAAGCCATCTCTATCCGGTGGTGGTGGACCATCTGTGGCAGTTCCTTTCCCTTCACCCTCTCCGGTTAGGTCTCCAATTAGATCTCCCTCTCCTTCTTCTGAGGGTGTATGGACCGCGGTACCTATCCCAGCCCCTGAGCCCAAATCCAAGCGGTGCACCTCTAACCGTAGGGTTACCAGATCATCCTCTGCTCCTCAGGAGCCCTCTGCCCCAACCGGTGCTCCAGCTCCGGTTGAGACCTCCTTGGAGGTCCCTGCTTCTGGGTCTCCGGTGTCTAGGCGACCTCCTCCCTCCAAGGCTCCTGCCAAGCCCTCCTCCAGTGCTAAGCCCTCTCGTTCTGGTCCTCGGAACTCGAATACACCTGAAAAGGTGAAAATTCAATCTCAGCGCCCCATTGTTGTCAAGGTTAGGGGTAAGGATGTTGACATCACTCACCAACAGGCTGCCTTGATTAAATATCTGATTTCTAGCCCTTCCAAGCCTCGTTTTCCTGCTGAGTATTTCATTTACAAAGCCATCAGGGGTGCGGGCACATCTCTTCGTGAGAATAGCTCTCTTGTCTTCCCTGCTGTCATCACCAAACTATGTTTGGATGCTGGGGTACATGTCCTTGATATTGATGTCATGGCTACTGAGAATGAGGCTGCTCCGGTCGATAAGTTATCCTTGGCAAAATCGATGAGCCAGTCTGATGTGTATGTGGAATCATTGGAGCAGACCCTGCTAAAGCAAGAGATCAAGCGTCAAGTTTCCAATGCTGTTGCTACTCTACAAGCTTCTTTTACTGCTCAGTTTGAGGCCCTGCGAAATGAACTGAAGGAATCTGTGGGGACACATGCGCCTCCTGCTAACCCTTCTGGTAGGGATGGAGCCTCGTCTACCCCTTCTTCCAGCTCTAGTTCTGGGGAGTCCTCTGACGCCTCTGCTGAGGAGTCCGAAGAAGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

41.66

Weight (kDa)

9.39

Isoelectric Point (pI)

80.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 1127
AccII CGCG 1 cut(s) 365
AciI CCGC 6 cut(s) 141, 195, 363, 365, 400, 776
AcsI RAATTY 2 cut(s) 25, 624
AcuI CTGAAG 2 cut(s) 111, 1085
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 2 cut(s) 369, 852
AfiI CCNNNNNNNGG 3 cut(s) 104, 200, 509
AflIII ACRYGT 1 cut(s) 853
AgeI ACCGGT 2 cut(s) 235, 464
AgsI TTSAA 2 cut(s) 167, 629
AjnI CCWGG 2 cut(s) 84, 136
AluBI AGCT 7 cut(s) 163, 170, 476, 801, 1025, 1143, 1193
AluI AGCT 7 cut(s) 163, 170, 476, 801, 1025, 1143, 1193
Alw21I GWGCWC 2 cut(s) 407, 472
Alw26I GTCTC 4 cut(s) 171, 324, 479, 519
Alw44I GTGCAC 1 cut(s) 403
AlwNI CAGNNNCTG 2 cut(s) 383, 970
AoxI GGCC 3 cut(s) 20, 209, 1047
ApaLI GTGCAC 1 cut(s) 403
ApeKI GCWGC 2 cut(s) 692, 893
ApoI RAATTY 2 cut(s) 25, 624
AsiGI ACCGGT 2 cut(s) 235, 464
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 2 cut(s) 639, 1090
AspS9I GGNCC 7 cut(s) 20, 143, 275, 360, 499, 590, 1048
AsuHPI GGTGA 5 cut(s) 239, 294, 631, 674, 817
AvaII GGWCC 5 cut(s) 143, 275, 360, 499, 590
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 2 cut(s) 407, 782
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 390, 453
BbsI GAAGAC 1 cut(s) 802
Bbv12I GWGCWC 2 cut(s) 407, 472
BbvCI CCTCAGC 1 cut(s) 1176
BbvI GCAGC 2 cut(s) 679, 880
BccI CCATC 6 cut(s) 89, 154, 262, 286, 773, 1109
BciT130I CCWGG 2 cut(s) 86, 138
BcoDI GTCTC 4 cut(s) 171, 324, 479, 519
BfaI CTAG 3 cut(s) 525, 717, 1146
BfoI RGCGCY 1 cut(s) 640
BfuAI ACCTGC 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 19
BglII AGATCT 1 cut(s) 329
BisI GCNGC 2 cut(s) 693, 894
BlpI GCTNAGC 2 cut(s) 249, 573
BlsI GCNGC 2 cut(s) 694, 895
Bme1390I CCNGG 2 cut(s) 86, 138
Bme18I GGWCC 5 cut(s) 143, 275, 360, 499, 590
BmgT120I GGNCC 7 cut(s) 20, 143, 275, 360, 499, 590, 1048
BmiI GGNNCC 7 cut(s) 48, 63, 369, 450, 501, 549, 1120
BmrFI CCNGG 2 cut(s) 86, 138
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 832
BmuI ACTGGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 802
BplI GAGNNNNNCTC 2 cut(s) 785, 817
BpmI CTGGAG 3 cut(s) 126, 456, 550
Bpu10I CCTNAGC 2 cut(s) 384, 1176
Bpu1102I GCTNAGC 2 cut(s) 249, 573
Bsa29I ATCGAT 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 1167
BsaI GGTCTC 4 cut(s) 171, 324, 479, 519
BsaJI CCNNGG 6 cut(s) 136, 363, 492, 543, 593, 915
BsaWI WCCGGW 8 cut(s) 224, 235, 263, 310, 464, 478, 517, 898
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 200, 509
Bse118I RCCGGY 2 cut(s) 235, 464
Bse1I ACTGG 3 cut(s) 182, 567, 934
Bse21I CCTNAGG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 86, 138
BseCI ATCGAT 1 cut(s) 926
BseDI CCNNGG 6 cut(s) 136, 363, 492, 543, 593, 915
BseGI GGATG 6 cut(s) 81, 146, 431, 673, 847, 1120
BseLI CCNNNNNNNGG 3 cut(s) 104, 200, 509
BseMII CTCAG 8 cut(s) 339, 375, 458, 647, 735, 873, 1052, 1167
BseNI ACTGG 3 cut(s) 182, 567, 934
BseRI GAGGAG 5 cut(s) 180, 432, 525, 553, 1193
BseSI GKGCMC 2 cut(s) 407, 782
BseXI GCAGC 2 cut(s) 679, 880
BseYI CCCAGC 2 cut(s) 376, 845
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 903
BshFI GGCC 3 cut(s) 22, 211, 1049
BshNI GGYRCC 1 cut(s) 367
BshTI ACCGGT 2 cut(s) 235, 464
BshVI ATCGAT 1 cut(s) 926
BsiEI CGRYCG 1 cut(s) 903
BsiHKAI GWGCWC 2 cut(s) 407, 472
BsiSI CCGG 8 cut(s) 225, 236, 264, 311, 465, 479, 518, 899
BslFI GGGAC 2 cut(s) 485, 1093
BslI CCNNNNNNNGG 3 cut(s) 104, 200, 509
BsmAI GTCTC 4 cut(s) 171, 324, 479, 519
BsmFI GGGAC 2 cut(s) 485, 1093
BsnI GGCC 3 cut(s) 22, 211, 1049
Bso31I GGTCTC 4 cut(s) 171, 324, 479, 519
Bsp1286I GDGCHC 5 cut(s) 390, 407, 453, 472, 782
Bsp143I GATC 3 cut(s) 329, 428, 984
Bsp1720I GCTNAGC 2 cut(s) 249, 573
BspACI CCGC 6 cut(s) 141, 195, 363, 365, 400, 776
BspANI GGCC 3 cut(s) 22, 211, 1049
BspCNI CTCAG 8 cut(s) 340, 376, 457, 646, 736, 874, 1051, 1168
BspDI ATCGAT 1 cut(s) 926
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 7 cut(s) 48, 63, 369, 450, 501, 549, 1120
BspMI ACCTGC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 367
BspTNI GGTCTC 4 cut(s) 171, 324, 479, 519
BsrBI CCGCTC 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 235, 464
BsrI ACTGG 3 cut(s) 182, 567, 934
BssAI RCCGGY 2 cut(s) 235, 464
BssECI CCNNGG 6 cut(s) 136, 363, 492, 543, 593, 915
BssMI GATC 3 cut(s) 329, 428, 984
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 3 cut(s) 492, 543, 915
Bst2UI CCWGG 2 cut(s) 86, 138
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 2 cut(s) 123, 792
BstACI GRCGYC 1 cut(s) 1167
BstAPI GCANNNNNTGC 1 cut(s) 970
BstC8I GCNNGC 1 cut(s) 778
BstDSI CCRYGG 1 cut(s) 363
BstEII GGTNACC 1 cut(s) 421
BstF5I GGATG 6 cut(s) 81, 146, 431, 673, 847, 1120
BstFNI CGCG 1 cut(s) 365
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 2 cut(s) 639, 1090
BstKTI GATC 3 cut(s) 332, 431, 987
BstMAI GTCTC 4 cut(s) 171, 324, 479, 519
BstMBI GATC 3 cut(s) 329, 428, 984
BstMCI CGRYCG 1 cut(s) 903
BstMWI GCNNNNNNNGC 3 cut(s) 19, 970, 1094
BstNI CCWGG 2 cut(s) 86, 138
BstNSI RCATGY 2 cut(s) 857, 1088
BstPI GGTNACC 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 84, 136
BstSLI GKGCMC 2 cut(s) 407, 782
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 679, 880
BstV2I GAAGAC 1 cut(s) 802
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 926
Bsu36I CCTNAGG 1 cut(s) 444
BsuRI GGCC 3 cut(s) 22, 211, 1049
BsuTUI ATCGAT 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 6 cut(s) 81, 146, 431, 673, 847, 1120
BtsIMutI CAGTG 1 cut(s) 574
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 778
CaiI CAGNNNCTG 2 cut(s) 383, 970
CfoI GCGC 2 cut(s) 639, 1090
Cfr10I RCCGGY 2 cut(s) 235, 464
Cfr13I GGNCC 7 cut(s) 20, 143, 275, 360, 499, 590, 1048
Cfr42I CCGCGG 1 cut(s) 366
ClaI ATCGAT 1 cut(s) 926
CseI GACGC 2 cut(s) 980, 1175
Csp6I GTAC 2 cut(s) 368, 851
CspAI ACCGGT 2 cut(s) 235, 464
CviAII CATG 4 cut(s) 55, 854, 874, 1085
CviQI GTAC 2 cut(s) 368, 851
DpnI GATC 3 cut(s) 331, 430, 986
DpnII GATC 3 cut(s) 329, 428, 984
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 123, 792
EarI CTCTTC 2 cut(s) 123, 792
Eco130I CCWWGG 3 cut(s) 492, 543, 915
Eco147I AGGCCT 1 cut(s) 211
Eco24I GRGCYC 2 cut(s) 390, 453
Eco31I GGTCTC 4 cut(s) 171, 324, 479, 519
Eco47I GGWCC 5 cut(s) 143, 275, 360, 499, 590
Eco57I CTGAAG 2 cut(s) 111, 1085
Eco81I CCTNAGG 1 cut(s) 444
Eco91I GGTNACC 1 cut(s) 421
EcoO109I RGGNCCY 2 cut(s) 499, 1048
EcoO65I GGTNACC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 84, 136
EcoT14I CCWWGG 3 cut(s) 492, 543, 915
EcoT38I GRGCYC 2 cut(s) 390, 453
ErhI CCWWGG 3 cut(s) 492, 543, 915
FaeI CATG 4 cut(s) 58, 857, 877, 1088
FaiI YATR 8 cut(s) 56, 152, 358, 835, 855, 875, 948, 1086
FalI AAGNNNNNCTT 2 cut(s) 899, 931
FaqI GGGAC 2 cut(s) 485, 1093
FatI CATG 4 cut(s) 54, 853, 873, 1084
FauI CCCGC 2 cut(s) 202, 769
FblI GTMKAC 1 cut(s) 1127
Fnu4HI GCNGC 2 cut(s) 693, 894
FokI GGATG 6 cut(s) 68, 133, 418, 680, 854, 1127
FriOI GRGCYC 2 cut(s) 390, 453
Fsp4HI GCNGC 2 cut(s) 693, 894
FspBI CTAG 3 cut(s) 525, 717, 1146
GlaI GCGC 2 cut(s) 638, 1089
GluI GCNGC 2 cut(s) 693, 894
GsaI CCCAGC 2 cut(s) 380, 849
GsuI CTGGAG 3 cut(s) 126, 456, 550
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 3 cut(s) 22, 211, 1049
HapII CCGG 8 cut(s) 225, 236, 264, 311, 465, 479, 518, 899
HgaI GACGC 2 cut(s) 980, 1175
HhaI GCGC 2 cut(s) 639, 1090
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 4 cut(s) 58, 857, 877, 1088
Hin6I GCGC 2 cut(s) 637, 1088
HinP1I GCGC 2 cut(s) 637, 1088
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 2 cut(s) 161, 1023
HinfI GANTC 4 cut(s) 953, 1070, 1157, 1181
HpaII CCGG 8 cut(s) 225, 236, 264, 311, 465, 479, 518, 899
HphI GGTGA 5 cut(s) 239, 294, 631, 674, 817
Hpy166II GTNNAC 4 cut(s) 275, 405, 673, 1128
Hpy188I TCNGA 6 cut(s) 349, 597, 711, 940, 1165, 1186
Hpy188III TCNNGA 3 cut(s) 105, 446, 791
Hpy8I GTNNAC 4 cut(s) 275, 405, 673, 1128
HpyAV CCTTC 6 cut(s) 309, 351, 732, 1060, 1113, 1143
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 58, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 970, 1094
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 4 cut(s) 58, 857, 877, 1088
HspAI GCGC 2 cut(s) 637, 1088
KpnI GGTACC 1 cut(s) 371
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 3 cut(s) 329, 428, 984
LmnI GCTCC 8 cut(s) 445, 448, 475, 481, 553, 901, 961, 1118
Lsp1109I GCAGC 2 cut(s) 679, 880
LweI GCATC 1 cut(s) 832
MaeI CTAG 3 cut(s) 525, 717, 1146
MaeIII GTNAC 2 cut(s) 227, 421
MalI GATC 3 cut(s) 331, 430, 986
MbiI CCGCTC 1 cut(s) 197
MboI GATC 3 cut(s) 329, 428, 984
MboII GAAGA 6 cut(s) 110, 336, 779, 802, 1128, 1199
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 5 cut(s) 390, 407, 453, 472, 782
MluCI AATT 3 cut(s) 25, 324, 624
MlyI GAGTC 2 cut(s) 1166, 1190
MseI TTAA 1 cut(s) 702
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 8 cut(s) 225, 236, 264, 311, 465, 479, 518, 899
MspR9I CCNGG 2 cut(s) 86, 138
MvaI CCWGG 2 cut(s) 86, 138
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 19, 970, 1094
NdeII GATC 3 cut(s) 329, 428, 984
NlaIII CATG 4 cut(s) 58, 857, 877, 1088
NlaIV GGNNCC 7 cut(s) 48, 63, 369, 450, 501, 549, 1120
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 2 cut(s) 857, 1088
PceI AGGCCT 1 cut(s) 211
PciI ACATGT 1 cut(s) 853
PfeI GAWTC 2 cut(s) 953, 1070
PinAI ACCGGT 2 cut(s) 235, 464
PkrI GCNGC 2 cut(s) 694, 895
PleI GAGTC 2 cut(s) 1165, 1189
PpsI GAGTC 2 cut(s) 1165, 1189
PpuMI RGGWCCY 1 cut(s) 499
PscI ACATGT 1 cut(s) 853
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 84, 136
PspEI GGTNACC 1 cut(s) 421
PspFI CCCAGC 2 cut(s) 376, 845
PspGI CCWGG 2 cut(s) 84, 136
PspN4I GGNNCC 7 cut(s) 48, 63, 369, 450, 501, 549, 1120
PspPI GGNCC 7 cut(s) 20, 143, 275, 360, 499, 590, 1048
PspPPI RGGWCCY 1 cut(s) 499
PstNI CAGNNNCTG 2 cut(s) 383, 970
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 2 cut(s) 369, 852
RsaNI GTAC 2 cut(s) 368, 851
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 2 cut(s) 693, 894
Sau3AI GATC 3 cut(s) 329, 428, 984
Sau96I GGNCC 7 cut(s) 20, 143, 275, 360, 499, 590, 1048
SchI GAGTC 2 cut(s) 1166, 1190
ScrFI CCNGG 2 cut(s) 86, 138
SduI GDGCHC 5 cut(s) 390, 407, 453, 472, 782
SfaNI GCATC 1 cut(s) 832
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 5 cut(s) 143, 275, 360, 499, 590
Sse9I AATT 3 cut(s) 25, 324, 624
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 6 cut(s) 141, 195, 363, 365, 400, 776
SspMI CTAG 3 cut(s) 525, 717, 1146
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 84, 136
StyI CCWWGG 3 cut(s) 492, 543, 915
TaaI ACNGT 1 cut(s) 416
TaqI TCGA 4 cut(s) 5, 602, 903, 926
TasI AATT 3 cut(s) 25, 324, 624
TfiI GAWTC 2 cut(s) 953, 1070
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 692, 893
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 742, 1074
TspRI CASTG 1 cut(s) 574
VneI GTGCAC 1 cut(s) 403
VpaK11BI GGWCC 5 cut(s) 143, 275, 360, 499, 590
XapI RAATTY 2 cut(s) 25, 624
XceI RCATGY 2 cut(s) 857, 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 1127
XspI CTAG 3 cut(s) 525, 717, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.