Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005777.1

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Reverse (-)

60087 .. 60452

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005777.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgtataccgctattcggaaagctgctgtagagggtcgccgtcacaaaaagagagccttagtttttccctctgtgatcactgctgtctgcaacaccaagggtgttgtttttgaagattctgatgaaatggcccctcccttgaaagttttctctcggagttctctccttcgcagcactagtcaaagcaagaccaagggtatttctgttgataccacttctatttcccctagcttgcttgatcatttcactgtggtgaacggcaagttggatcagcttcaaactgatgtgggtgcccttcttcagagagtggatcacattgagggggagcttcactctcttcaagatgcttttccatgttcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.21

Weight (kDa)

8.66

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	276, 318
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	4 cut(s)	113, 142, 278, 341
AhlI	ACTAGT	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	4 cut(s)	23, 231, 274, 328
AluI	AGCT	4 cut(s)	23, 231, 274, 328
AlwI	GGATC	2 cut(s)	276, 318
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	23, 171
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	10, 183
BceAI	ACGGC	2 cut(s)	24, 274
BclI	TGATCA	2 cut(s)	75, 238
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	2 cut(s)	177, 228
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	24, 172
BlsI	GCNGC	2 cut(s)	25, 173
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	132, 292
BmsI	GCATC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BsaJI	CCNNGG	2 cut(s)	96, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	96, 192
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	10, 183
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	15
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	75, 238, 268, 310
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	132, 292
BspPI	GGATC	2 cut(s)	276, 318
BspT107I	GGYRCC	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	96, 192
BssMI	GATC	4 cut(s)	75, 238, 268, 310
BssNAI	GTATAC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	96, 192
Bst1107I	GTATAC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	58
BstKTI	GATC	4 cut(s)	78, 241, 271, 313
BstMBI	GATC	4 cut(s)	75, 238, 268, 310
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	10, 183
BstZ17I	GTATAC	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 246
Cac8I	GCNNGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	6 cut(s)	23, 56, 131, 231, 274, 328
CviKI_1	RGCY	6 cut(s)	23, 56, 131, 231, 274, 328
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	4 cut(s)	77, 240, 270, 312
DpnII	GATC	4 cut(s)	75, 238, 268, 310
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	96, 192
Eco57I	CTGAAG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	96, 192
ErhI	CCWWGG	2 cut(s)	96, 192
FaeI	CATG	1 cut(s)	357
FaiI	YATR	2 cut(s)	6, 355
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	1 cut(s)	353
FbaI	TGATCA	2 cut(s)	75, 238
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	24, 172
Fsp4HI	GCNGC	2 cut(s)	24, 172
FspBI	CTAG	2 cut(s)	177, 228
GluI	GCNGC	2 cut(s)	24, 172
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	357
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	6, 256
Hpy188I	TCNGA	4 cut(s)	18, 121, 156, 303
Hpy188III	TCNNGA	2 cut(s)	341, 363
Hpy8I	GTNNAC	2 cut(s)	6, 256
HpyAV	CCTTC	2 cut(s)	176, 305
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	357
Ksp22I	TGATCA	2 cut(s)	75, 238
Kzo9I	GATC	4 cut(s)	75, 238, 268, 310
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	10, 183
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	177, 228
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	77, 240, 270, 312
MboI	GATC	4 cut(s)	75, 238, 268, 310
MboII	GAAGA	3 cut(s)	125, 290, 329
MhlI	GDGCHC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	25, 79, 144, 313
MroXI	GAANNNNTTC	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	251
NdeII	GATC	4 cut(s)	75, 238, 268, 310
NlaIII	CATG	1 cut(s)	357
NlaIV	GGNNCC	2 cut(s)	132, 292
NmuCI	GTSAC	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	25, 173
PspN4I	GGNNCC	2 cut(s)	132, 292
PspPI	GGNCC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	2 cut(s)	24, 172
Sau3AI	GATC	4 cut(s)	75, 238, 268, 310
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	25, 233, 276, 330
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	176
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	177, 228
StyI	CCWWGG	2 cut(s)	96, 192
TaaI	ACNGT	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	116
TscAI	CASTG	2 cut(s)	85, 253
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	23, 171
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	85, 253
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	2 cut(s)	177, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.