FvH4_3g14362

spliceosomal complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001194
Physical Location & Seq
Reverse (-)
8814223 .. 8815178
956 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14362.t1

Sequence Viewer

Length: 798 bp
ATGCCTCAAGCGATTAAGCACTTTGTTGATAGGTTGGGTTGGGTCAAAGCTTTGGAGTCATTTCCTAGGGTCAACATCTCTTTAGTTAAGGAGTTCTATGCTAATTTTCTCGAGAATGTCCCTTCTGAAATCAAGCTTAGATCCAATGATCCTATCATGGTTTGGGTGAGAGGAGTAGAGGTTGATATCCGGCCTACTAGGATACGTGAGGTCTTATCCCTCCTGATTACTGAGAAGCATACTATGAACAAAGTTTTTCAATACCGAGATTCAACAACCATAGATCACCTTGCCTCTCTCATATACTCCTCTCCGTCTACTGAGCCATTCTCAGATTCCTTTCTATCCAGTAGCTTCATGACCGAGTGGTACAAGTTTATGACCTTTGTAGCTAGGTCCCTTCTCACTCCCACAAACCAAACCAAGAAGATCACTCACCAGCAAGCTATCTTGGTTGCCTATTTCTGTGACAAAACCAAACCTCTTCTTCCAGTGGAGTACTATATCTTTCAGGCTATCAGGCGCGCTGCTATCCCTCAACGTCTCTCTGTCTCCAGCTCCATCGTTTTTCCGGCTGTGATCACTCTTCTCTGCATCAAGAGCAATGTCTCATTCCATGAAGATGATGCTCTTGCTCTGCCTGTCAACCCTGTTGACCATGTCACCATTGCCAAATCAGCTGCTCAGTCCGGGTTGTATGCGGAGTCATTAGAACAGACTTTGCTGAAAAAGGAGATCAAGCTTATTGACTTATTGTGGACAAGGGAGCCCAGTGATGATGAGAATGCTTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

266

Amino Acids

30.2

Weight (kDa)

7.02

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 11 - 203 1.6e-21 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 317
AccII CGCG 1 cut(s) 525
AciI CCGC 1 cut(s) 701
AclWI GGATC 2 cut(s) 135, 143
AfaI GTAC 2 cut(s) 371, 500
AgsI TTSAA 2 cut(s) 260, 273
AluBI AGCT 8 cut(s) 50, 136, 354, 392, 446, 558, 680, 742
AluI AGCT 8 cut(s) 50, 136, 354, 392, 446, 558, 680, 742
Alw26I GTCTC 3 cut(s) 548, 556, 613
AlwI GGATC 2 cut(s) 135, 143
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 527, 680
AspA2I CCTAGG 1 cut(s) 65
AspLEI GCGC 2 cut(s) 525, 527
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 4 cut(s) 178, 278, 428, 655
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 396
AvrII CCTAGG 1 cut(s) 65
BanII GRGCYC 1 cut(s) 771
BbvI GCAGC 2 cut(s) 514, 667
BccI CCATC 1 cut(s) 569
BciVI GTATCC 1 cut(s) 195
BclI TGATCA 1 cut(s) 579
BcnI CCSGG 1 cut(s) 691
BcoDI GTCTC 3 cut(s) 548, 556, 613
BfaI CTAG 3 cut(s) 66, 198, 393
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 2 cut(s) 528, 681
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 2 cut(s) 529, 682
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 1 cut(s) 691
Bme18I GGWCC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 398, 768
BmrFI CCNGG 1 cut(s) 691
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 2 cut(s) 603, 616
BmuI ACTGGG 1 cut(s) 765
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 691
BsaAI YACGTR 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse1I ACTGG 3 cut(s) 348, 491, 771
Bse3DI GCAATG 2 cut(s) 610, 666
BseDI CCNNGG 1 cut(s) 65
BseMI GCAATG 2 cut(s) 610, 666
BseMII CTCAG 4 cut(s) 222, 312, 345, 698
BseNI ACTGG 3 cut(s) 348, 491, 771
BsePI GCGCGC 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 186, 298
BseXI GCAGC 2 cut(s) 514, 667
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 3 cut(s) 190, 572, 690
BslFI GGGAC 2 cut(s) 104, 382
BsmAI GTCTC 3 cut(s) 548, 556, 613
BsmBI CGTCTC 1 cut(s) 548
BsmFI GGGAC 2 cut(s) 104, 382
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 771
Bsp143I GATC 6 cut(s) 140, 148, 283, 429, 579, 735
BspACI CCGC 1 cut(s) 701
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 4 cut(s) 223, 313, 344, 697
BspFNI CGCG 1 cut(s) 525
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 398, 768
BspPI GGATC 2 cut(s) 135, 143
BsrDI GCAATG 2 cut(s) 610, 666
BsrI ACTGG 3 cut(s) 348, 491, 771
BssECI CCNNGG 1 cut(s) 65
BssHII GCGCGC 1 cut(s) 523
BssMI GATC 6 cut(s) 140, 148, 283, 429, 579, 735
BssT1I CCWWGG 1 cut(s) 65
Bst6I CTCTTC 2 cut(s) 489, 591
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 444, 525
BstDEI CTNAG 6 cut(s) 137, 231, 321, 331, 684, 795
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 2 cut(s) 525, 527
BstKTI GATC 6 cut(s) 143, 151, 286, 432, 582, 738
BstMAI GTCTC 3 cut(s) 548, 556, 613
BstMBI GATC 6 cut(s) 140, 148, 283, 429, 579, 735
BstMWI GCNNNNNNNGC 2 cut(s) 600, 677
BstSCI CCNGG 1 cut(s) 689
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 514, 667
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 498, 778
Cac8I GCNNGC 2 cut(s) 444, 525
CciI TCATGA 1 cut(s) 357
CfoI GCGC 2 cut(s) 525, 527
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 370, 499
CviAII CATG 4 cut(s) 157, 358, 617, 659
CviQI GTAC 2 cut(s) 370, 499
DdeI CTNAG 6 cut(s) 137, 231, 321, 331, 684, 795
DpnI GATC 6 cut(s) 142, 150, 285, 431, 581, 737
DpnII GATC 6 cut(s) 140, 148, 283, 429, 579, 735
Eam1104I CTCTTC 2 cut(s) 489, 591
EarI CTCTTC 2 cut(s) 489, 591
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 771
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 396
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 4 cut(s) 160, 361, 620, 662
FaqI GGGAC 2 cut(s) 104, 382
FatI CATG 4 cut(s) 156, 357, 616, 658
FbaI TGATCA 1 cut(s) 579
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 528, 681
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 2 cut(s) 528, 681
FspBI CTAG 3 cut(s) 66, 198, 393
GlaI GCGC 2 cut(s) 524, 526
GluI GCNGC 2 cut(s) 528, 681
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 190, 572, 690
HhaI GCGC 2 cut(s) 525, 527
Hin1II CATG 4 cut(s) 160, 361, 620, 662
Hin6I GCGC 2 cut(s) 523, 525
HinP1I GCGC 2 cut(s) 523, 525
HincII GTYRAC 3 cut(s) 73, 646, 655
HindII GTYRAC 3 cut(s) 73, 646, 655
HindIII AAGCTT 3 cut(s) 48, 134, 740
HinfI GANTC 4 cut(s) 56, 269, 335, 704
HpaII CCGG 3 cut(s) 190, 572, 690
HphI GGTGA 4 cut(s) 178, 278, 428, 655
Hpy166II GTNNAC 5 cut(s) 73, 318, 646, 655, 759
Hpy188I TCNGA 2 cut(s) 127, 334
Hpy188III TCNNGA 5 cut(s) 110, 112, 223, 358, 598
Hpy8I GTNNAC 5 cut(s) 73, 318, 646, 655, 759
HpyAV CCTTC 2 cut(s) 132, 410
HpyCH4IV ACGT 2 cut(s) 205, 541
HpyCH4V TGCA 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 600, 677
HpyF3I CTNAG 6 cut(s) 137, 231, 321, 331, 684, 795
HpySE526I ACGT 2 cut(s) 205, 541
Hsp92II CATG 4 cut(s) 160, 361, 620, 662
HspAI GCGC 2 cut(s) 523, 525
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 6 cut(s) 140, 148, 283, 429, 579, 735
LmnI GCTCC 2 cut(s) 563, 766
Lsp1109I GCAGC 2 cut(s) 514, 667
LweI GCATC 2 cut(s) 603, 616
MaeI CTAG 3 cut(s) 66, 198, 393
MaeII ACGT 2 cut(s) 205, 541
MaeIII GTNAC 2 cut(s) 467, 661
MalI GATC 6 cut(s) 142, 150, 285, 431, 581, 737
MboI GATC 6 cut(s) 140, 148, 283, 429, 579, 735
MboII GAAGA 5 cut(s) 439, 476, 479, 578, 632
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 771
MluCI AATT 1 cut(s) 103
MlyI GAGTC 2 cut(s) 65, 713
MnlI CCTC 9 cut(s) 15, 164, 172, 202, 230, 304, 319, 492, 546
MseI TTAA 2 cut(s) 15, 87
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 3 cut(s) 190, 572, 690
MspR9I CCNGG 1 cut(s) 691
Mva1269I GAATGC 1 cut(s) 790
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 600, 677
NciI CCSGG 1 cut(s) 691
NdeII GATC 6 cut(s) 140, 148, 283, 429, 579, 735
NlaIII CATG 4 cut(s) 160, 361, 620, 662
NlaIV GGNNCC 2 cut(s) 398, 768
NmuCI GTSAC 2 cut(s) 467, 661
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 357
PauI GCGCGC 1 cut(s) 523
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 269, 335
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 2 cut(s) 529, 682
PleI GAGTC 2 cut(s) 64, 712
PpsI GAGTC 2 cut(s) 64, 712
Ppu21I YACGTR 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 398, 768
PspPI GGNCC 1 cut(s) 396
PspPPI RGGWCCY 1 cut(s) 396
PsuI RGATCY 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 659
PteI GCGCGC 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 371, 500
RsaNI GTAC 2 cut(s) 370, 499
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 2 cut(s) 15, 87
SatI GCNGC 2 cut(s) 528, 681
Sau3AI GATC 6 cut(s) 140, 148, 283, 429, 579, 735
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 2 cut(s) 65, 713
ScrFI CCNGG 1 cut(s) 691
SduI GDGCHC 1 cut(s) 771
SfaNI GCATC 2 cut(s) 603, 616
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 6, 110
SmoI CTYRAG 2 cut(s) 6, 110
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 701
SspMI CTAG 3 cut(s) 66, 198, 393
StyD4I CCNGG 1 cut(s) 689
StyI CCWWGG 1 cut(s) 65
TaiI ACGT 2 cut(s) 208, 544
TaqI TCGA 1 cut(s) 111
TaqII GACCGA 1 cut(s) 377
TasI AATT 1 cut(s) 103
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 2 cut(s) 269, 335
Tru1I TTAA 2 cut(s) 15, 87
Tru9I TTAA 2 cut(s) 15, 87
TscAI CASTG 2 cut(s) 498, 778
TseFI GTSAC 2 cut(s) 467, 661
TseI GCWGC 2 cut(s) 527, 680
Tsp45I GTSAC 2 cut(s) 467, 661
TspDTI ATGAA 3 cut(s) 260, 346, 633
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 498, 778
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 110
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 3 cut(s) 66, 198, 393
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.