Rroxscaffold_1G00042780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001194
Physical Location & Seq
Forward (+)
61096757 .. 61097837
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042780.1

Sequence Viewer

Length: 912 bp
ATGAGTCCAAGGATTAAAGCTTCCTCCAAGGTGATTAAGAAAAATACCATTGCGCGTACAGTTTGTCGGCGATCACCTTCTGTCACCAAACGTGTTCGTAACCAAAAAGTTAAGTTGTGCTATGAAACCAGCACTTTGAAACGTAACATCATCTGTGAGCGTCCTTTTGAACTAGAGGATGTTGGTGAAGATTTCACTAATATTATTAACAAACGTCAGTGGAATTCCCTGATAGATTATAATGATCCACCAAATGCCACTCTGGTCAAAGAATTCTATGCTCGTCTTGCTGAGGATACTGGTACCGATCAGGATAAGGTTTATGTCAGGAACAAGTTGGTACCGTTTAACCCTGAGGTTATTCGATATACTCTCAATCTTCCTCCTTGTAGTTTACCCGACAGCTATGCCACTTTCAAGAAAATGATTGACAGAAAGAAGCAGCACTTGCCTTCTGACCTTCGTGATTCTGGGCCCGGTCATGGTGAAATGCCATCATCAAACTATGGATGTCTGACTGATCTCCATAGGACCCTTGCTCAGCTCAGTGGATCATCTATTTGGCCTTCTAGTCAAGATCAGTTTATGAAGCTTCCGGAGCCTGTTGACAGTGTCAATAAGGTCAAGAGTGATGCTCATATAAAATTTTCCAACTCAAATCGTTCTTCTAGTAGTGCCCCTGTTGCCTCTTCTGGTCTGCATGATGATGCTTCTTTAGCTTCGAATCCAATGTTTTGCGACTTGCAGAGTTCAATTATTGCTGTGGAAAAGGGGGTAGCTTGCCTTAAGAATGCTGTCTCTCATGTTACTCAAGATACCATAGGTGACAATATTACTGGTTTGACTACCCGCATGTCTGCTTTGAAAGCTGAGTTAATTTCCATTACTAAGGCTGTCGCTCATGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.54

Weight (kDa)

9.15

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 71 - 192 4.8e-12 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
Acc65I GGTACC 2 cut(s) 302, 340
AccB1I GGYRCC 2 cut(s) 302, 340
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 1 cut(s) 850
AclWI GGATC 2 cut(s) 239, 559
AcsI RAATTY 3 cut(s) 223, 272, 644
AfaI GTAC 3 cut(s) 58, 304, 342
AfiI CCNNNNNNNGG 1 cut(s) 482
AflII CTTAAG 1 cut(s) 785
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 139, 170, 418, 753, 865
AluBI AGCT 7 cut(s) 20, 405, 544, 592, 719, 779, 869
AluI AGCT 7 cut(s) 20, 405, 544, 592, 719, 779, 869
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 2 cut(s) 239, 559
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 2 cut(s) 473, 563
ApaI GGGCCC 1 cut(s) 477
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 3 cut(s) 223, 272, 644
Asp718I GGTACC 2 cut(s) 302, 340
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 473, 474, 531
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 6 cut(s) 43, 66, 76, 197, 497, 836
AsuII TTCGAA 1 cut(s) 722
AvaII GGWCC 1 cut(s) 531
AxyI CCTNAGG 1 cut(s) 354
BaeGI GKGCMC 2 cut(s) 477, 679
BanI GGYRCC 2 cut(s) 302, 340
BanII GRGCYC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 502
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 3 cut(s) 173, 570, 669
BfrI CTTAAG 1 cut(s) 785
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 1 cut(s) 443
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 444
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 531
BmgT120I GGNCC 3 cut(s) 473, 474, 531
BmiI GGNNCC 5 cut(s) 304, 342, 475, 533, 600
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 622, 697
BplI GAGNNNNNCTC 2 cut(s) 619, 651
Bpu10I CCTNAGC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 722
BpuEI CTTGAG 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 8, 27
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 304, 841
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 595
BseDI CCNNGG 2 cut(s) 8, 27
BseGI GGATG 2 cut(s) 184, 515
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 5 cut(s) 282, 345, 554, 559, 861
BseNI ACTGG 2 cut(s) 304, 841
BseSI GKGCMC 2 cut(s) 477, 679
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 475, 565
BshNI GGYRCC 2 cut(s) 302, 340
BsiSI CCGG 2 cut(s) 477, 596
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 802
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 2 cut(s) 475, 565
Bsp119I TTCGAA 1 cut(s) 722
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 477, 679
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 6 cut(s) 71, 244, 307, 520, 551, 577
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 1 cut(s) 850
BspANI GGCC 2 cut(s) 475, 565
BspCNI CTCAG 5 cut(s) 283, 346, 553, 558, 862
BspEI TCCGGA 1 cut(s) 595
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 5 cut(s) 304, 342, 475, 533, 600
BspPI GGATC 2 cut(s) 239, 559
BspT104I TTCGAA 1 cut(s) 722
BspT107I GGYRCC 2 cut(s) 302, 340
BspTI CTTAAG 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 2 cut(s) 304, 841
BssECI CCNNGG 2 cut(s) 8, 27
BssMI GATC 6 cut(s) 71, 244, 307, 520, 551, 577
BssT1I CCWWGG 2 cut(s) 8, 27
Bst4CI ACNGT 3 cut(s) 61, 345, 611
Bst6I CTCTTC 1 cut(s) 694
BstAFI CTTAAG 1 cut(s) 785
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 722
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 6 cut(s) 291, 354, 540, 545, 870, 888
BstF5I GGATG 2 cut(s) 184, 515
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 6 cut(s) 74, 247, 310, 523, 554, 580
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 6 cut(s) 71, 244, 307, 520, 551, 577
BstMWI GCNNNNNNNGC 6 cut(s) 287, 448, 598, 683, 716, 866
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 475
BstSLI GKGCMC 2 cut(s) 477, 679
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 454
Bsu36I CCTNAGG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 475, 565
BtsCI GGATG 2 cut(s) 184, 515
BtsIMutI CAGTG 3 cut(s) 224, 553, 616
Cac8I GCNNGC 1 cut(s) 781
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 473, 474, 531
CseI GACGC 1 cut(s) 149
Csp6I GTAC 3 cut(s) 57, 303, 341
CviAII CATG 5 cut(s) 482, 701, 803, 853, 902
CviQI GTAC 3 cut(s) 57, 303, 341
DdeI CTNAG 6 cut(s) 291, 354, 540, 545, 870, 888
DpnI GATC 6 cut(s) 73, 246, 309, 522, 553, 579
DpnII GATC 6 cut(s) 71, 244, 307, 520, 551, 577
Eam1104I CTCTTC 1 cut(s) 694
EarI CTCTTC 1 cut(s) 694
Eco130I CCWWGG 2 cut(s) 8, 27
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 531
Eco81I CCTNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 531
EcoRI GAATTC 2 cut(s) 223, 272
EcoT14I CCWWGG 2 cut(s) 8, 27
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 2 cut(s) 8, 27
FaeI CATG 5 cut(s) 485, 704, 806, 856, 905
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 5 cut(s) 481, 700, 802, 852, 901
FauI CCCGC 1 cut(s) 857
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 2 cut(s) 191, 522
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 3 cut(s) 173, 570, 669
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 443
HaeIII GGCC 2 cut(s) 475, 565
HapII CCGG 2 cut(s) 477, 596
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 55
Hin1II CATG 5 cut(s) 485, 704, 806, 856, 905
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 2 cut(s) 18, 590
HinfI GANTC 3 cut(s) 4, 467, 724
HpaII CCGG 2 cut(s) 477, 596
HphI GGTGA 6 cut(s) 43, 66, 76, 197, 497, 836
Hpy166II GTNNAC 2 cut(s) 395, 607
Hpy188I TCNGA 2 cut(s) 457, 516
Hpy188III TCNNGA 9 cut(s) 311, 328, 418, 464, 575, 596, 625, 812, 909
Hpy8I GTNNAC 2 cut(s) 395, 607
HpyAV CCTTC 4 cut(s) 87, 462, 470, 576
HpyCH4III ACNGT 3 cut(s) 61, 345, 611
HpyCH4IV ACGT 3 cut(s) 91, 142, 214
HpyCH4V TGCA 2 cut(s) 700, 745
HpyF10VI GCNNNNNNNGC 6 cut(s) 287, 448, 598, 683, 716, 866
HpyF3I CTNAG 6 cut(s) 291, 354, 540, 545, 870, 888
HpySE526I ACGT 3 cut(s) 91, 142, 214
Hsp92II CATG 5 cut(s) 485, 704, 806, 856, 905
HspAI GCGC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 595
KpnI GGTACC 2 cut(s) 306, 344
Kzo9I GATC 6 cut(s) 71, 244, 307, 520, 551, 577
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 2 cut(s) 622, 697
MaeI CTAG 3 cut(s) 173, 570, 669
MaeII ACGT 3 cut(s) 91, 142, 214
MaeIII GTNAC 5 cut(s) 82, 98, 143, 805, 824
MalI GATC 6 cut(s) 73, 246, 309, 522, 553, 579
MboI GATC 6 cut(s) 71, 244, 307, 520, 551, 577
MboII GAAGA 4 cut(s) 200, 371, 657, 681
MhlI GDGCHC 2 cut(s) 477, 679
MluCI AATT 5 cut(s) 223, 272, 644, 753, 876
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 6 cut(s) 34, 169, 286, 349, 393, 697
MroI TCCGGA 1 cut(s) 595
MseI TTAA 7 cut(s) 15, 36, 111, 207, 348, 786, 875
MslI CAYNNNNRTG 1 cut(s) 705
MspCI CTTAAG 1 cut(s) 785
MspI CCGG 2 cut(s) 477, 596
MspR9I CCNGG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 796
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 6 cut(s) 287, 448, 598, 683, 716, 866
NciI CCSGG 1 cut(s) 477
NdeII GATC 6 cut(s) 71, 244, 307, 520, 551, 577
NlaIII CATG 5 cut(s) 485, 704, 806, 856, 905
NlaIV GGNNCC 5 cut(s) 304, 342, 475, 533, 600
NmuCI GTSAC 2 cut(s) 82, 824
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 722
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 467, 724
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 1 cut(s) 444
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 531
PsiI TTATAA 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 531
PspN4I GGNNCC 5 cut(s) 304, 342, 475, 533, 600
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 3 cut(s) 473, 474, 531
PspPPI RGGWCCY 1 cut(s) 531
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 3 cut(s) 58, 304, 342
RsaNI GTAC 3 cut(s) 57, 303, 341
RseI CAYNNNNRTG 1 cut(s) 705
SaqAI TTAA 7 cut(s) 15, 36, 111, 207, 348, 786, 875
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 6 cut(s) 71, 244, 307, 520, 551, 577
Sau96I GGNCC 3 cut(s) 473, 474, 531
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 2 cut(s) 477, 679
SfaNI GCATC 2 cut(s) 622, 697
SfuI TTCGAA 1 cut(s) 722
SinI GGWCC 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 2 cut(s) 785, 810
SmoI CTYRAG 2 cut(s) 785, 810
Sse9I AATT 5 cut(s) 223, 272, 644, 753, 876
SsiI CCGC 1 cut(s) 850
SspI AATATT 2 cut(s) 202, 832
SspMI CTAG 3 cut(s) 173, 570, 669
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 2 cut(s) 8, 27
TaaI ACNGT 3 cut(s) 61, 345, 611
TaiI ACGT 3 cut(s) 94, 145, 217
TaqI TCGA 2 cut(s) 364, 722
TasI AATT 5 cut(s) 223, 272, 644, 753, 876
TfiI GAWTC 2 cut(s) 467, 724
Tru1I TTAA 7 cut(s) 15, 36, 111, 207, 348, 786, 875
Tru9I TTAA 7 cut(s) 15, 36, 111, 207, 348, 786, 875
TscAI CASTG 3 cut(s) 224, 553, 616
TseFI GTSAC 2 cut(s) 82, 824
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 2 cut(s) 82, 824
TspDTI ATGAA 2 cut(s) 138, 602
TspRI CASTG 3 cut(s) 224, 553, 616
Tth111I GACNNNGTC 1 cut(s) 611
Vha464I CTTAAG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 531
XapI RAATTY 3 cut(s) 223, 272, 644
XceI RCATGY 1 cut(s) 856
XspI CTAG 3 cut(s) 173, 570, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.