Rh3CG371000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001194
Physical Location & Seq
Forward (+)
47507595 .. 47510572
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG371000.1

Sequence Viewer

Length: 969 bp
ATGGCTCAAACCAAGCATGCTGCCATCATTGACGCTACACCATCACGCCGCTGCCATATCGATTCCTCGCCGCGTCGATCTTCTCGTCTGAACCGAGCTGGCAAAGACACCAGGCCTCCTACATCTGCCACCGCTCCTCAAAATCTTGAGACTCCTCCGTCGAGTCCAATTGCCTCCACCGAGCCTTCCGCTTCTGCCACTGCCACTCCATCCCTCTCGGCCTCTCCCAAGCCATTGTCTCCATCTCCTGCAGCACCTCCTCCTGAGGGTGACGCATCTCGCGGTACCAAGCGCCGCCGTGCAGCTACTTCATCTCCCAGGCCCTCCAAGCCTCTTAACAACTCTCGCAAGTCTGTGCCCCAGAAATCGGCCTCATCTCAAGTCTCCAAGCAACTTGCCTCCCTGACATGTAAGGTCTCTTCTCAAGCCTACTTTCGTACCCTTGAAGAGCAGCAACTTTATGAACACTTTACTTGTCTCCAACCCATTGTTTATGAAAAGAGGTTCGATTTGGCTTGTCTAGATCATATGTTTGGTAATATTGTTCAGGTTTTTCAGTGGGTTCCCTTCTTGGAGTCTCTATCATGTCCTAATTTATCTGTTGTGTGGGAATTTTATGCTAATTGCTCCCCTAACATGCACTTGAGTGTTGGATTGCTTGACTCTGCCACTTCATGTGACTGTATGGTCAGTGTGCGTGGCATGTCCGTTGGTTTAACTCCTACTACCATCCGAACAGTCATGCATCTTCCCAGGCCTCGTGAGGATACTCTCATCACTACTGCTACCTTTCTTGCCTTCCTAACTCCAGATCTGTTGGTGGATACCATGAATACTAATCCTCCTTATCAGCCTCCTAAGGAACTTGTGAGCGGTGATTTAACTGAATGGTACCGATTGCTTGGTCATCTGGTTCGCACTATCCTCTATCCATCCACTCCAACATCACTTGGGAAGAAGCTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

35.16

Weight (kDa)

9.33

Isoelectric Point (pI)

70.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_32 PF20167 185 - 316 7.3e-07 Putative plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 157, 686
Acc65I GGTACC 2 cut(s) 284, 891
AccB1I GGYRCC 2 cut(s) 284, 891
AccBSI CCGCTC 2 cut(s) 134, 873
AccII CGCG 2 cut(s) 73, 282
AciI CCGC 7 cut(s) 49, 71, 132, 189, 282, 295, 873
AcsI RAATTY 1 cut(s) 611
AfaI GTAC 3 cut(s) 286, 439, 893
AfiI CCNNNNNNNGG 2 cut(s) 266, 367
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 3 cut(s) 110, 317, 752
AleI CACNNNNGTG 1 cut(s) 645
AluBI AGCT 3 cut(s) 98, 305, 961
AluI AGCT 3 cut(s) 98, 305, 961
Alw26I GTCTC 6 cut(s) 143, 243, 388, 421, 482, 582
AoxI GGCC 5 cut(s) 113, 219, 320, 369, 755
ApeKI GCWGC 5 cut(s) 20, 51, 251, 302, 451
ApoI RAATTY 1 cut(s) 611
Asp718I GGTACC 2 cut(s) 284, 891
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 281, 887
AxyI CCTNAGG 2 cut(s) 264, 858
BaeGI GKGCMC 1 cut(s) 360
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BanI GGYRCC 2 cut(s) 284, 891
BarI GAAGNNNNNNTAC 2 cut(s) 403, 435
BauI CACGAG 1 cut(s) 759
BbvI GCAGC 5 cut(s) 7, 38, 263, 314, 463
BccI CCATC 6 cut(s) 32, 49, 217, 250, 737, 940
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 3 cut(s) 112, 319, 754
BciVI GTATCC 2 cut(s) 760, 817
BcoDI GTCTC 6 cut(s) 143, 243, 388, 421, 482, 582
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 295
BfuI GTATCC 2 cut(s) 760, 817
BglII AGATCT 1 cut(s) 811
BisI GCNGC 8 cut(s) 21, 49, 52, 71, 252, 295, 303, 452
BlsI GCNGC 8 cut(s) 22, 50, 53, 72, 253, 296, 304, 453
Bme1390I CCNGG 3 cut(s) 112, 319, 754
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 3 cut(s) 286, 564, 893
BmrFI CCNGG 3 cut(s) 112, 319, 754
BmsI GCATC 2 cut(s) 284, 754
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 4 cut(s) 167, 363, 408, 664
Bsa29I ATCGAT 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 317, 752
BsaXI ACNNNNNCTCC 8 cut(s) 100, 130, 190, 220, 298, 328, 826, 856
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 367
Bse21I CCTNAGG 2 cut(s) 264, 858
BseBI CCWGG 3 cut(s) 112, 319, 754
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 317, 752
BseGI GGATG 3 cut(s) 209, 729, 932
BseLI CCNNNNNNNGG 2 cut(s) 266, 367
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 3 cut(s) 126, 144, 249
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 5 cut(s) 7, 38, 263, 314, 463
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 2 cut(s) 73, 282
BshFI GGCC 5 cut(s) 115, 221, 322, 371, 757
BshNI GGYRCC 2 cut(s) 284, 891
BshVI ATCGAT 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 266, 367
BsmAI GTCTC 6 cut(s) 143, 243, 388, 421, 482, 582
BsnI GGCC 5 cut(s) 115, 221, 322, 371, 757
Bso31I GGTCTC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 3 cut(s) 77, 523, 811
BspACI CCGC 7 cut(s) 49, 71, 132, 189, 282, 295, 873
BspANI GGCC 5 cut(s) 115, 221, 322, 371, 757
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 60
BspFNI CGCG 2 cut(s) 73, 282
BspLI GGNNCC 3 cut(s) 286, 564, 893
BspMAI CTGCAG 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 441
BspT107I GGYRCC 2 cut(s) 284, 891
BspTNI GGTCTC 1 cut(s) 421
BsrBI CCGCTC 2 cut(s) 134, 873
BssECI CCNNGG 2 cut(s) 317, 752
BssMI GATC 3 cut(s) 77, 523, 811
BssSI CACGAG 1 cut(s) 759
Bst2BI CACGAG 1 cut(s) 759
Bst2UI CCWGG 3 cut(s) 112, 319, 754
Bst4CI ACNGT 2 cut(s) 683, 739
Bst6I CTCTTC 2 cut(s) 424, 441
BstC8I GCNNGC 3 cut(s) 18, 100, 963
BstDEI CTNAG 2 cut(s) 264, 858
BstF5I GGATG 3 cut(s) 209, 729, 932
BstFNI CGCG 2 cut(s) 73, 282
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 3 cut(s) 80, 526, 814
BstMAI GTCTC 6 cut(s) 143, 243, 388, 421, 482, 582
BstMBI GATC 3 cut(s) 77, 523, 811
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 3 cut(s) 112, 319, 754
BstNSI RCATGY 4 cut(s) 20, 411, 640, 706
BstSCI CCNGG 3 cut(s) 110, 317, 752
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 2 cut(s) 73, 282
BstV1I GCAGC 5 cut(s) 7, 38, 263, 314, 463
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu15I ATCGAT 1 cut(s) 60
Bsu36I CCTNAGG 2 cut(s) 264, 858
BsuI GTATCC 2 cut(s) 760, 817
BsuRI GGCC 5 cut(s) 115, 221, 322, 371, 757
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 3 cut(s) 209, 729, 932
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 198, 563, 697
Cac8I GCNNGC 3 cut(s) 18, 100, 963
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 321
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 3 cut(s) 41, 62, 281
Csp6I GTAC 3 cut(s) 285, 438, 892
CviAII CATG 8 cut(s) 17, 408, 585, 637, 675, 703, 742, 829
CviQI GTAC 3 cut(s) 285, 438, 892
DdeI CTNAG 2 cut(s) 264, 858
DpnI GATC 3 cut(s) 79, 525, 813
DpnII GATC 3 cut(s) 77, 523, 811
DrdI GACNNNNNNGTC 2 cut(s) 157, 686
DseDI GACNNNNNNGTC 2 cut(s) 157, 686
Eam1104I CTCTTC 2 cut(s) 424, 441
EarI CTCTTC 2 cut(s) 424, 441
Eco147I AGGCCT 2 cut(s) 115, 757
Eco31I GGTCTC 1 cut(s) 421
Eco81I CCTNAGG 2 cut(s) 264, 858
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 3 cut(s) 110, 317, 752
EcoT22I ATGCAT 1 cut(s) 747
FaeI CATG 8 cut(s) 20, 411, 588, 640, 678, 706, 745, 832
FatI CATG 8 cut(s) 16, 407, 584, 636, 674, 702, 741, 828
FauNDI CATATG 1 cut(s) 528
Fnu4HI GCNGC 8 cut(s) 21, 49, 52, 71, 252, 295, 303, 452
FokI GGATG 3 cut(s) 196, 716, 919
Fsp4HI GCNGC 8 cut(s) 21, 49, 52, 71, 252, 295, 303, 452
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 293
GluI GCNGC 8 cut(s) 21, 49, 52, 71, 252, 295, 303, 452
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 5 cut(s) 115, 221, 322, 371, 757
HgaI GACGC 3 cut(s) 41, 62, 281
HhaI GCGC 1 cut(s) 294
Hin1II CATG 8 cut(s) 20, 411, 588, 640, 678, 706, 745, 832
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 5 cut(s) 62, 151, 163, 575, 662
HphI GGTGA 2 cut(s) 281, 887
Hpy188I TCNGA 2 cut(s) 90, 734
Hpy188III TCNNGA 5 cut(s) 146, 263, 521, 761, 809
Hpy99I CGWCG 2 cut(s) 78, 163
HpyAV CCTTC 3 cut(s) 195, 577, 808
HpyCH4III ACNGT 2 cut(s) 683, 739
HpyCH4V TGCA 4 cut(s) 251, 302, 640, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 2 cut(s) 264, 858
Hsp92II CATG 8 cut(s) 20, 411, 588, 640, 678, 706, 745, 832
HspAI GCGC 1 cut(s) 292
KpnI GGTACC 2 cut(s) 288, 895
Kzo9I GATC 3 cut(s) 77, 523, 811
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 139, 632
Lsp1109I GCAGC 5 cut(s) 7, 38, 263, 314, 463
LweI GCATC 2 cut(s) 284, 754
MaeI CTAG 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 269, 677
MalI GATC 3 cut(s) 79, 525, 813
MbiI CCGCTC 2 cut(s) 134, 873
MboI GATC 3 cut(s) 77, 523, 811
MboII GAAGA 5 cut(s) 72, 411, 458, 740, 967
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 4 cut(s) 168, 592, 611, 622
MlyI GAGTC 4 cut(s) 145, 172, 584, 656
MmeI TCCRAC 3 cut(s) 505, 631, 965
Mph1103I ATGCAT 1 cut(s) 747
MseI TTAA 3 cut(s) 336, 716, 881
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 51
MspR9I CCNGG 3 cut(s) 112, 319, 754
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 3 cut(s) 112, 319, 754
MvnI CGCG 2 cut(s) 73, 282
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeI CATATG 1 cut(s) 528
NdeII GATC 3 cut(s) 77, 523, 811
NlaIII CATG 8 cut(s) 20, 411, 588, 640, 678, 706, 745, 832
NlaIV GGNNCC 3 cut(s) 286, 564, 893
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 269, 677
NsiI ATGCAT 1 cut(s) 747
NspI RCATGY 4 cut(s) 20, 411, 640, 706
OliI CACNNNNGTG 1 cut(s) 645
PaeI GCATGC 1 cut(s) 20
PceI AGGCCT 2 cut(s) 115, 757
PciI ACATGT 1 cut(s) 407
PciSI GCTCTTC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 91
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 8 cut(s) 22, 50, 53, 72, 253, 296, 304, 453
PleI GAGTC 4 cut(s) 145, 171, 583, 656
PpsI GAGTC 4 cut(s) 145, 171, 583, 656
PscI ACATGT 1 cut(s) 407
Psp6I CCWGG 3 cut(s) 110, 317, 752
PspGI CCWGG 3 cut(s) 110, 317, 752
PspN4I GGNNCC 3 cut(s) 286, 564, 893
PspPI GGNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 3 cut(s) 286, 439, 893
RsaNI GTAC 3 cut(s) 285, 438, 892
RseI CAYNNNNRTG 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 336, 716, 881
SatI GCNGC 8 cut(s) 21, 49, 52, 71, 252, 295, 303, 452
Sau3AI GATC 3 cut(s) 77, 523, 811
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 4 cut(s) 145, 172, 584, 656
ScrFI CCNGG 3 cut(s) 112, 319, 754
SduI GDGCHC 1 cut(s) 360
SetI ASST 8 cut(s) 100, 259, 307, 417, 506, 552, 791, 963
SfaNI GCATC 2 cut(s) 284, 754
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 4 cut(s) 146, 378, 423, 643
SmoI CTYRAG 4 cut(s) 146, 378, 423, 643
SphI GCATGC 1 cut(s) 20
Sse9I AATT 4 cut(s) 168, 592, 611, 622
SseBI AGGCCT 2 cut(s) 115, 757
SsiI CCGC 7 cut(s) 49, 71, 132, 189, 282, 295, 873
SspI AATATT 1 cut(s) 541
SspMI CTAG 1 cut(s) 521
StuI AGGCCT 2 cut(s) 115, 757
StyD4I CCNGG 3 cut(s) 110, 317, 752
TaaI ACNGT 2 cut(s) 683, 739
TaqI TCGA 4 cut(s) 60, 76, 161, 507
TasI AATT 4 cut(s) 168, 592, 611, 622
TauI GCSGC 3 cut(s) 51, 73, 297
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 336, 716, 881
Tru9I TTAA 3 cut(s) 336, 716, 881
TscAI CASTG 3 cut(s) 205, 563, 697
TseFI GTSAC 2 cut(s) 269, 677
TseI GCWGC 5 cut(s) 20, 51, 251, 302, 451
Tsp45I GTSAC 2 cut(s) 269, 677
TspDTI ATGAA 5 cut(s) 300, 477, 510, 663, 845
TspGWI ACGGA 2 cut(s) 147, 697
TspRI CASTG 3 cut(s) 205, 563, 697
XapI RAATTY 1 cut(s) 611
XbaI TCTAGA 1 cut(s) 520
XceI RCATGY 4 cut(s) 20, 411, 640, 706
XspI CTAG 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.