Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004174.1

Orthogroup ID

OG0001194

Physical Location & Seq

Genomic Coordinates Forward (+)

11592 .. 14582

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004174.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgtctaagattgataaggagcttgcagccttgtccattgatactgttgtggctgcactttatgaggatcgttcagatgccactcccgtggagctttcagctggtgatcttagtgagttctatcgattgttggggcatttggttcgtactctgctctatccttccactcagagcagcaagattaccttggaggaggctcgtctcatctatgtcctaaatgccaagggtccctatctacctcttgagcactacaagtatacaaccatccggaaagctgttgttgagggtcgtcgtcacaaaaaggccgccttggtctttccctccgtgatcactgctgtctgccaagccaaaggcattgtctttgaggactctgatgaaatggcacctcctttgaaagttttctcccggagttctctccttcacagctctagccaaagcaagaccaaaggtatctctgttgacatcacttctctctctcggccttgcttgaacatttcacgcttcttcgtgagctttggcatacctatccaaaagggggagaaaaaaccttattttgacttaggcttagtttgggattgctgtgctgtgagaagaagcacttccgaacttgatgtgagaggaaacacttccgaacttgctgagactccagtgacaccatttcagtccaagacgtttgatttggtggacgacccatcactggatttgatcatatcatggggttctactggaagaagcttcgtggtttgggaccctgtggagtttgcgaggcttgtcttgccccgaaatttcaagcacagcaatttgcagaaagaggaggaggagaagctcgatgagcaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

280

Amino Acids

31.34

Weight (kDa)

6.25

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24842 FvH4_2g07543 FvH4_3g08351 FvH4_3g08352 FvH4_3g14362 FvH4_3g15231 FvH4_3g19632 FvH4_3g35771 FvH4_3g38671 FvH4_4g16891 FvH4_4g25191 FvH4_4g25252 FvH4_4g25261 FvH4_5g19751 FvH4_5g25324 FvH4_5g31491 FvH4_5g32131 FvH4_6g22791 FvH4_7g12561 FvH4_7g23182
rosa_chinensis	RchiOBHm_Chr5g0038241 RchiOBHm_Chr7g0194631
rosa_laevigata	RLG00000033840
rosa_multiflora	Rmu_co7970978.1_g000001 Rmu_sc0000785.1_g000006 Rmu_sc0001787.1_g000003 Rmu_sc0002012.1_g000020 Rmu_sc0002985.1_g000015 Rmu_sc0004174.1_g000004 Rmu_sc0005777.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020530 Rroxscaffold_1G00029530 Rroxscaffold_1G00042780 Rroxscaffold_2G00089190 Rroxscaffold_7G00196670
rosa_rugosa	Rorug05G0171400
rosa_samantha	Rh2BG314200 Rh2BG314300 Rh2BG417200 Rh2DG575200 Rh3CG371000 Rh4CG200400 Rh4CG200500 Rh5AG258900 Rh5BG212600 Rh5BG262400 Rh5BG262500 Rh5BG474700 Rh5CG294900 Rh5CG498100 Rh5DG271500 Rh6AG032200 Rh6AG234900 Rh6DG126300 Rh7BG431200
rosa_wichuraiana	Rw4G006730 Rw5G024230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	784
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	535, 697
AgsI	TTSAA	3 cut(s)	394, 490, 790
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	9 cut(s)	22, 94, 101, 275, 426, 513, 735, 826, 840
AluI	AGCT	9 cut(s)	22, 94, 101, 275, 426, 513, 735, 826, 840
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	206, 635
AlwI	GGATC	1 cut(s)	75
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	2 cut(s)	303, 479
ApeKI	GCWGC	3 cut(s)	26, 53, 174
ApoI	RAATTY	1 cut(s)	784
ArsI	GACNNNNNNTTYG	4 cut(s)	342, 374, 661, 693
Asp700I	GAANNNNTTC	3 cut(s)	398, 598, 625
AspS9I	GGNCC	2 cut(s)	227, 748
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	227, 748
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BanI	GGYRCC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	38, 40, 186
BccI	CCATC	2 cut(s)	272, 700
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BclI	TGATCA	2 cut(s)	327, 705
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	206, 635
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	4 cut(s)	27, 54, 175, 306
BlsI	GCNGC	4 cut(s)	28, 55, 176, 307
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	2 cut(s)	227, 748
BmgT120I	GGNCC	2 cut(s)	227, 748
BmiI	GGNNCC	5 cut(s)	228, 229, 384, 749, 750
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	124
BsaJI	CCNNGG	4 cut(s)	87, 186, 222, 309
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 697
Bse1I	ACTGG	3 cut(s)	647, 702, 730
BseAI	TCCGGA	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	4 cut(s)	87, 186, 222, 309
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	535, 697
BseMII	CTCAG	2 cut(s)	182, 630
BseNI	ACTGG	3 cut(s)	647, 702, 730
BseRI	GAGGAG	4 cut(s)	206, 827, 830, 833
BseXI	GCAGC	3 cut(s)	38, 40, 186
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	305, 481
BshNI	GGYRCC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	268, 406
BslFI	GGGAC	2 cut(s)	213, 761
BslI	CCNNNNNNNGG	2 cut(s)	535, 697
BsmAI	GTCTC	2 cut(s)	206, 635
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	213, 761
BsnI	GGCC	2 cut(s)	305, 481
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	67, 106, 327, 705
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	305, 481
BspCNI	CTCAG	2 cut(s)	181, 631
BspDI	ATCGAT	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	267
BspLI	GGNNCC	5 cut(s)	228, 229, 384, 749, 750
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	647, 702, 730
BssECI	CCNNGG	4 cut(s)	87, 186, 222, 309
BssMI	GATC	4 cut(s)	67, 106, 327, 705
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	3 cut(s)	186, 222, 309
Bst1107I	GTATAC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	6 cut(s)	6, 110, 168, 559, 565, 639
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	4 cut(s)	70, 109, 330, 708
BstMAI	GTCTC	2 cut(s)	206, 635
BstMBI	GATC	4 cut(s)	67, 106, 327, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	775, 832
BstSCI	CCNGG	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	38, 40, 186
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	305, 481
BsuTUI	ATCGAT	1 cut(s)	124
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	330, 654, 695
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	227, 748
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	714
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	6 cut(s)	6, 110, 168, 559, 565, 639
DpnI	GATC	4 cut(s)	69, 108, 329, 707
DpnII	GATC	4 cut(s)	67, 106, 327, 705
Eco130I	CCWWGG	3 cut(s)	186, 222, 309
Eco47I	GGWCC	2 cut(s)	227, 748
EcoO109I	RGGNCCY	2 cut(s)	227, 748
EcoT14I	CCWWGG	3 cut(s)	186, 222, 309
ErhI	CCWWGG	3 cut(s)	186, 222, 309
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	1 cut(s)	717
FaiI	YATR	6 cut(s)	63, 210, 258, 521, 710, 715
FalI	AAGNNNNNCTT	6 cut(s)	170, 202, 293, 325, 583, 615
FaqI	GGGAC	2 cut(s)	213, 761
FatI	CATG	1 cut(s)	713
FbaI	TGATCA	2 cut(s)	327, 705
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	27, 54, 175, 306
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	27, 54, 175, 306
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	4 cut(s)	27, 54, 175, 306
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	305, 481
HapII	CCGG	2 cut(s)	268, 406
Hin1II	CATG	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	2 cut(s)	368, 643
HpaII	CCGG	2 cut(s)	268, 406
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	258, 460, 685
Hpy188I	TCNGA	5 cut(s)	76, 171, 373, 604, 631
Hpy188III	TCNNGA	3 cut(s)	242, 268, 508
Hpy8I	GTNNAC	3 cut(s)	258, 460, 685
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	171, 428
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	3 cut(s)	26, 56, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	775, 832
HpyF3I	CTNAG	6 cut(s)	6, 110, 168, 559, 565, 639
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	1 cut(s)	717
KflI	GGGWCCC	2 cut(s)	227, 748
Kpn2I	TCCGGA	1 cut(s)	267
Ksp22I	TGATCA	2 cut(s)	327, 705
Kzo9I	GATC	4 cut(s)	67, 106, 327, 705
LmnI	GCTCC	2 cut(s)	19, 91
LpnPI	CCDG	7 cut(s)	87, 281, 419, 660, 683, 711, 765
Lsp1109I	GCAGC	3 cut(s)	38, 40, 186
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	2 cut(s)	293, 649
MalI	GATC	4 cut(s)	69, 108, 329, 707
MboI	GATC	4 cut(s)	67, 106, 327, 705
MboII	GAAGA	3 cut(s)	496, 603, 741
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	784, 799
MlyI	GAGTC	2 cut(s)	362, 637
MroI	TCCGGA	1 cut(s)	267
MroXI	GAANNNNTTC	3 cut(s)	398, 598, 625
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	268, 406
MspR9I	CCNGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	775, 832
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	67, 106, 327, 705
NlaIII	CATG	1 cut(s)	717
NlaIV	GGNNCC	5 cut(s)	228, 229, 384, 749, 750
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	2 cut(s)	293, 649
OliI	CACNNNNGTG	1 cut(s)	86
PdmI	GAANNNNTTC	3 cut(s)	398, 598, 625
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	4 cut(s)	28, 55, 176, 307
PleI	GAGTC	2 cut(s)	362, 637
PpsI	GAGTC	2 cut(s)	362, 637
PpuMI	RGGWCCY	2 cut(s)	227, 748
Psp5II	RGGWCCY	2 cut(s)	227, 748
PspN4I	GGNNCC	5 cut(s)	228, 229, 384, 749, 750
PspPI	GGNCC	2 cut(s)	227, 748
PspPPI	RGGWCCY	2 cut(s)	227, 748
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	4 cut(s)	27, 54, 175, 306
Sau3AI	GATC	4 cut(s)	67, 106, 327, 705
Sau96I	GGNCC	2 cut(s)	227, 748
SchI	GAGTC	2 cut(s)	362, 637
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	227, 748
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	784, 799
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	3 cut(s)	186, 222, 309
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	124, 828
TasI	AATT	2 cut(s)	784, 799
TauI	GCSGC	1 cut(s)	308
TscAI	CASTG	3 cut(s)	337, 654, 702
TseFI	GTSAC	2 cut(s)	293, 649
TseI	GCWGC	3 cut(s)	26, 53, 174
Tsp45I	GTSAC	2 cut(s)	293, 649
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	3 cut(s)	337, 654, 702
VpaK11BI	GGWCC	2 cut(s)	227, 748
XapI	RAATTY	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	257
XmnI	GAANNNNTTC	3 cut(s)	398, 598, 625
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.