Rmu_sc0000785.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000785.1
OG0001194
Physical Location & Seq
Forward (+)
29762 .. 31135
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000785.1_g000006.1.cds

Sequence Viewer

Length: 1374 bp
atggctcgcatcaagcacactgttcagcaccccaaaactccggcccatgcctcgcctccagctccgcatctggcccaccgtcctactcggcgctccaatcgccttcaccggcctagagacgctggcccacctacctccgctgagaatcctcaggacttgcctgacttgccatctcagtctccagcccgtgctccatcgtcaccttctgggtccgagcattcctccgccgccgctgctctttccgattccactgcttctgagcctgctcctgcctctccttcctctactcccacaccgccgcgccgctcgcctagtccctccttgactgctccgccatccaagagacctcggacttcaagcagctctgctccttccaccttccggtcgcccaagtcacctaaaacccgtaaggattctcgctttggcactcgtactcaaagacttgattatgaaaattttacatgtttccgacccttggtctctgaaaagcgtttcaatgtcgctgagttgggtaccttgtttgccgaaactgtaagactttttcgttgggaatctgtattggatgtgttgccagctcctaacctcactgtggtcagagagttctatgcctgttgttctccaaatatgccaatgcaggttgatttgcttaatgcggctactctgattggatgcaatgtggatattcgcggtgtttccgtccctttcacccccaccaccatccgtgacacattgggtctccttgcccctgtttccgagatgcctaagattgatgaggagcttgctgccttgtccattgatactgttgtggctgccctatatgaggatcgtccggatgccacacccacggagctttccgctggtgctctcagtgagttctgccgcttgttgggacatttggttcgtactctgctttatccttctactcaaagcagcaagcttaccttggaggaagctcgtctcatctatgtcctaaatgccaagggtccctatcttcctcccgagcacttcatgtataccgctattcggaaggctgctgttgagggtcgtcgacacaaaaaggctgctttagtttttccctctgtgatcactgctgtctgcaaagccaagggtgttgtctttacggactctgatgaaatggcacctcctttgaaagttttctcccggagttctctccttcgcagctccagtcaaagcaagaccaagggtgtctctgttgacatcacttctatctctcggagcttgcttgaccatttcacagtggtcaaccgcaagttggatcagcttcagactgacgtgggtgctcttcttcagcgcgtggatcatcttaagggggagtttcactctcttcgtgacgatattggcgtttcttcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

457

Amino Acids

49.71

Weight (kDa)

9.56

Isoelectric Point (pI)

65.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 625
Acc65I GGTACC 1 cut(s) 512
AccB1I GGYRCC 2 cut(s) 512, 1138
AccBSI CCGCTC 1 cut(s) 306
AccI GTMKAC 2 cut(s) 1013, 1048
AccII CGCG 3 cut(s) 301, 687, 1314
AccIII TCCGGA 1 cut(s) 829
AclWI GGATC 3 cut(s) 831, 1284, 1326
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 2 cut(s) 1268, 1292
AfaI GTAC 3 cut(s) 433, 514, 904
AfiI CCNNNNNNNGG 7 cut(s) 381, 475, 589, 820, 886, 1023, 1273
AflII CTTAAG 1 cut(s) 1325
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 3 cut(s) 357, 496, 1150
AhdI GACNNNNNGTC 1 cut(s) 476
AjiI CACGTC 1 cut(s) 1294
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
Alw21I GWGCWC 4 cut(s) 193, 865, 1005, 1303
Alw26I GTCTC 7 cut(s) 111, 183, 337, 484, 740, 962, 1213
AlwI GGATC 3 cut(s) 831, 1284, 1326
Ama87I CYCGRG 1 cut(s) 998
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 4 cut(s) 42, 72, 110, 124
ApeKI GCWGC 8 cut(s) 233, 360, 782, 809, 930, 1031, 1061, 1179
ApoI RAATTY 1 cut(s) 454
ArsI GACNNNNNNTTYG 2 cut(s) 882, 914
Asp700I GAANNNNTTC 1 cut(s) 1154
Asp718I GGTACC 1 cut(s) 512
AspLEI GCGC 3 cut(s) 93, 303, 1314
AspS9I GGNCC 5 cut(s) 43, 73, 125, 210, 983
AsuC2I CCSGG 1 cut(s) 1162
AsuHPI GGTGA 4 cut(s) 98, 192, 387, 697
AvaI CYCGRG 1 cut(s) 998
AvaII GGWCC 2 cut(s) 210, 983
AxyI CCTNAGG 1 cut(s) 150
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BanI GGYRCC 2 cut(s) 512, 1138
Bbv12I GWGCWC 4 cut(s) 193, 865, 1005, 1303
BbvI GCAGC 8 cut(s) 220, 372, 769, 796, 942, 1018, 1048, 1191
BccI CCATC 4 cut(s) 178, 202, 343, 725
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BclI TGATCA 1 cut(s) 1083
BcnI CCSGG 1 cut(s) 1162
BcoDI GTCTC 7 cut(s) 111, 183, 337, 484, 740, 962, 1213
BfaI CTAG 2 cut(s) 114, 312
BfoI RGCGCY 1 cut(s) 94
BfrI CTTAAG 1 cut(s) 1325
BfuAI ACCTGC 1 cut(s) 625
Bme1390I CCNGG 1 cut(s) 1162
Bme18I GGWCC 2 cut(s) 210, 983
BmeRI GACNNNNNGTC 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 998
BmgBI CACGTC 1 cut(s) 1294
BmgT120I GGNCC 5 cut(s) 43, 73, 125, 210, 983
BmiI GGNNCC 5 cut(s) 211, 514, 984, 985, 1140
BmrFI CCNGG 1 cut(s) 1162
BmsI GCATC 5 cut(s) 18, 76, 659, 747, 823
BplI GAGNNNNNCTC 4 cut(s) 206, 238, 1325, 1357
BpmI CTGGAG 3 cut(s) 42, 165, 1168
BpuMI CCSGG 1 cut(s) 1162
BsaI GGTCTC 3 cut(s) 337, 484, 740
BsaJI CCNNGG 7 cut(s) 347, 474, 843, 942, 978, 1104, 1200
BsaWI WCCGGW 2 cut(s) 381, 829
Bsc4I CCNNNNNNNGG 7 cut(s) 381, 475, 589, 820, 886, 1023, 1273
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 1185
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 679
BseAI TCCGGA 1 cut(s) 829
BseDI CCNNGG 7 cut(s) 347, 474, 843, 942, 978, 1104, 1200
BseGI GGATG 5 cut(s) 335, 568, 674, 717, 838
BseLI CCNNNNNNNGG 7 cut(s) 381, 475, 589, 820, 886, 1023, 1273
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 6 cut(s) 132, 164, 188, 249, 495, 880
BseNI ACTGG 1 cut(s) 1185
BseRI GAGGAG 1 cut(s) 788
BseXI GCAGC 8 cut(s) 220, 372, 769, 796, 942, 1018, 1048, 1191
Bsh1236I CGCG 3 cut(s) 301, 687, 1314
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 4 cut(s) 44, 74, 112, 126
BshNI GGYRCC 2 cut(s) 512, 1138
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 4 cut(s) 193, 865, 1005, 1303
BsiHKCI CYCGRG 1 cut(s) 998
BsiSI CCGG 5 cut(s) 41, 109, 382, 830, 1162
BslFI GGGAC 4 cut(s) 300, 683, 903, 969
BslI CCNNNNNNNGG 7 cut(s) 381, 475, 589, 820, 886, 1023, 1273
BsmAI GTCTC 7 cut(s) 111, 183, 337, 484, 740, 962, 1213
BsmBI CGTCTC 2 cut(s) 111, 962
BsmFI GGGAC 4 cut(s) 300, 683, 903, 969
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 4 cut(s) 44, 74, 112, 126
Bso31I GGTCTC 3 cut(s) 337, 484, 740
BsoBI CYCGRG 1 cut(s) 998
Bsp1286I GDGCHC 4 cut(s) 193, 865, 1005, 1303
Bsp13I TCCGGA 1 cut(s) 829
Bsp143I GATC 4 cut(s) 823, 1083, 1276, 1318
BspANI GGCC 4 cut(s) 44, 74, 112, 126
BspCNI CTCAG 6 cut(s) 133, 163, 187, 250, 496, 879
BspEI TCCGGA 1 cut(s) 829
BspFNI CGCG 3 cut(s) 301, 687, 1314
BspLI GGNNCC 5 cut(s) 211, 514, 984, 985, 1140
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 3 cut(s) 831, 1284, 1326
BspQI GCTCTTC 1 cut(s) 1308
BspT107I GGYRCC 2 cut(s) 512, 1138
BspTI CTTAAG 1 cut(s) 1325
BspTNI GGTCTC 3 cut(s) 337, 484, 740
BsrBI CCGCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 1 cut(s) 1185
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 7 cut(s) 347, 474, 843, 942, 978, 1104, 1200
BssMI GATC 4 cut(s) 823, 1083, 1276, 1318
BssNAI GTATAC 1 cut(s) 1014
BssT1I CCWWGG 5 cut(s) 474, 942, 978, 1104, 1200
Bst1107I GTATAC 1 cut(s) 1014
Bst4CI ACNGT 6 cut(s) 22, 80, 532, 589, 802, 1258
Bst6I CTCTTC 2 cut(s) 1308, 1350
BstAFI CTTAAG 1 cut(s) 1325
BstC8I GCNNGC 8 cut(s) 7, 124, 264, 308, 573, 780, 935, 1241
BstDEI CTNAG 7 cut(s) 141, 150, 174, 258, 504, 762, 866
BstDSI CCRYGG 1 cut(s) 843
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 5 cut(s) 335, 568, 674, 717, 838
BstFNI CGCG 3 cut(s) 301, 687, 1314
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 3 cut(s) 93, 303, 1314
BstKTI GATC 4 cut(s) 826, 1086, 1279, 1321
BstMAI GTCTC 7 cut(s) 111, 183, 337, 484, 740, 962, 1213
BstMBI GATC 4 cut(s) 823, 1083, 1276, 1318
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 4 cut(s) 99, 166, 233, 307
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 1160
BstUI CGCG 3 cut(s) 301, 687, 1314
BstV1I GCAGC 8 cut(s) 220, 372, 769, 796, 942, 1018, 1048, 1191
BstZ17I GTATAC 1 cut(s) 1014
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 4 cut(s) 44, 74, 112, 126
BtgI CCRYGG 1 cut(s) 843
BtrI CACGTC 1 cut(s) 1294
BtsCI GGATG 5 cut(s) 335, 568, 674, 717, 838
BtsI GCAGTG 2 cut(s) 249, 1086
BtsIMutI CAGTG 6 cut(s) 18, 249, 585, 874, 1086, 1263
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 8 cut(s) 7, 124, 264, 308, 573, 780, 935, 1241
CfoI GCGC 3 cut(s) 93, 303, 1314
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 5 cut(s) 43, 73, 125, 210, 983
CseI GACGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 432, 513, 903
CviAII CATG 3 cut(s) 47, 462, 1009
CviQI GTAC 3 cut(s) 432, 513, 903
DdeI CTNAG 7 cut(s) 141, 150, 174, 258, 504, 762, 866
DpnI GATC 4 cut(s) 825, 1085, 1278, 1320
DpnII GATC 4 cut(s) 823, 1083, 1276, 1318
DriI GACNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 1308, 1350
Eam1105I GACNNNNNGTC 1 cut(s) 476
EarI CTCTTC 2 cut(s) 1308, 1350
EciI GGCGGA 2 cut(s) 214, 321
Eco130I CCWWGG 5 cut(s) 474, 942, 978, 1104, 1200
Eco31I GGTCTC 3 cut(s) 337, 484, 740
Eco47I GGWCC 2 cut(s) 210, 983
Eco57I CTGAAG 2 cut(s) 1268, 1292
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 998
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 983
EcoT14I CCWWGG 5 cut(s) 474, 942, 978, 1104, 1200
ErhI CCWWGG 5 cut(s) 474, 942, 978, 1104, 1200
Esp3I CGTCTC 2 cut(s) 111, 962
FaeI CATG 3 cut(s) 50, 465, 1012
FalI AAGNNNNNCTT 2 cut(s) 926, 958
FaqI GGGAC 4 cut(s) 300, 683, 903, 969
FatI CATG 3 cut(s) 46, 461, 1008
FbaI TGATCA 1 cut(s) 1083
FblI GTMKAC 2 cut(s) 1013, 1048
FokI GGATG 5 cut(s) 322, 575, 681, 704, 845
FspBI CTAG 2 cut(s) 114, 312
GlaI GCGC 3 cut(s) 92, 302, 1313
GsuI CTGGAG 3 cut(s) 42, 165, 1168
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 4 cut(s) 44, 74, 112, 126
HapII CCGG 5 cut(s) 41, 109, 382, 830, 1162
HgaI GACGC 1 cut(s) 128
HhaI GCGC 3 cut(s) 93, 303, 1314
Hin1II CATG 3 cut(s) 50, 465, 1012
Hin6I GCGC 3 cut(s) 91, 301, 1312
HinP1I GCGC 3 cut(s) 91, 301, 1312
HincII GTYRAC 3 cut(s) 1049, 1216, 1264
HindII GTYRAC 3 cut(s) 1049, 1216, 1264
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 5 cut(s) 145, 245, 413, 551, 1124
HpaII CCGG 5 cut(s) 41, 109, 382, 830, 1162
HphI GGTGA 4 cut(s) 98, 192, 387, 697
Hpy166II GTNNAC 4 cut(s) 1014, 1049, 1216, 1264
Hpy188III TCNNGA 5 cut(s) 152, 830, 998, 1349, 1371
Hpy8I GTNNAC 4 cut(s) 1014, 1049, 1216, 1264
Hpy99I CGWCG 1 cut(s) 1050
HpyAV CCTTC 8 cut(s) 113, 213, 288, 381, 388, 927, 1021, 1184
HpyCH4III ACNGT 6 cut(s) 22, 80, 532, 589, 802, 1258
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 3 cut(s) 634, 672, 1098
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 166, 233, 307
HpyF3I CTNAG 7 cut(s) 141, 150, 174, 258, 504, 762, 866
HpySE526I ACGT 1 cut(s) 1293
Hsp92II CATG 3 cut(s) 50, 465, 1012
HspAI GCGC 3 cut(s) 91, 301, 1312
KflI GGGWCCC 1 cut(s) 983
Kpn2I TCCGGA 1 cut(s) 829
KpnI GGTACC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 1083
Kzo9I GATC 4 cut(s) 823, 1083, 1276, 1318
LguI GCTCTTC 1 cut(s) 1308
Lsp1109I GCAGC 8 cut(s) 220, 372, 769, 796, 942, 1018, 1048, 1191
LweI GCATC 5 cut(s) 18, 76, 659, 747, 823
MaeI CTAG 2 cut(s) 114, 312
MaeII ACGT 1 cut(s) 1293
MaeIII GTNAC 4 cut(s) 198, 393, 722, 1349
MalI GATC 4 cut(s) 825, 1085, 1278, 1320
MbiI CCGCTC 1 cut(s) 306
MboI GATC 4 cut(s) 823, 1083, 1276, 1318
MboII GAAGA 5 cut(s) 983, 1295, 1298, 1337, 1359
MhlI GDGCHC 4 cut(s) 193, 865, 1005, 1303
MluCI AATT 1 cut(s) 454
MlyI GAGTC 1 cut(s) 1118
MmeI TCCRAC 2 cut(s) 493, 1254
MroI TCCGGA 1 cut(s) 829
MroXI GAANNNNTTC 1 cut(s) 1154
MseI TTAA 2 cut(s) 648, 1326
MspA1I CMGCKG 3 cut(s) 140, 233, 857
MspCI CTTAAG 1 cut(s) 1325
MspI CCGG 5 cut(s) 41, 109, 382, 830, 1162
MspR9I CCNGG 1 cut(s) 1162
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 3 cut(s) 301, 687, 1314
MwoI GCNNNNNNNGC 4 cut(s) 99, 166, 233, 307
NciI CCSGG 1 cut(s) 1162
NdeII GATC 4 cut(s) 823, 1083, 1276, 1318
NlaIII CATG 3 cut(s) 50, 465, 1012
NlaIV GGNNCC 5 cut(s) 211, 514, 984, 985, 1140
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 4 cut(s) 198, 393, 722, 1349
NspI RCATGY 1 cut(s) 465
PciI ACATGT 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 1308
PcsI WCGNNNNNNNCGW 1 cut(s) 1359
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 1154
PfeI GAWTC 4 cut(s) 145, 245, 413, 551
PfoI TCCNGGA 1 cut(s) 1160
PleI GAGTC 1 cut(s) 1118
PpsI GAGTC 1 cut(s) 1118
PpuMI RGGWCCY 1 cut(s) 983
PscI ACATGT 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 983
PspN4I GGNNCC 5 cut(s) 211, 514, 984, 985, 1140
PspPI GGNCC 5 cut(s) 43, 73, 125, 210, 983
PspPPI RGGWCCY 1 cut(s) 983
RsaI GTAC 3 cut(s) 433, 514, 904
RsaNI GTAC 3 cut(s) 432, 513, 903
SalI GTCGAC 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 1308
SaqAI TTAA 2 cut(s) 648, 1326
Sau3AI GATC 4 cut(s) 823, 1083, 1276, 1318
Sau96I GGNCC 5 cut(s) 43, 73, 125, 210, 983
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 1 cut(s) 1162
SduI GDGCHC 4 cut(s) 193, 865, 1005, 1303
SfaNI GCATC 5 cut(s) 18, 76, 659, 747, 823
SinI GGWCC 2 cut(s) 210, 983
SmlI CTYRAG 1 cut(s) 1325
SmoI CTYRAG 1 cut(s) 1325
Sse9I AATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 114, 312
StyD4I CCNGG 1 cut(s) 1160
StyI CCWWGG 5 cut(s) 474, 942, 978, 1104, 1200
TaaI ACNGT 6 cut(s) 22, 80, 532, 589, 802, 1258
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 1 cut(s) 1048
TasI AATT 1 cut(s) 454
TauI GCSGC 6 cut(s) 230, 233, 301, 306, 656, 882
TfiI GAWTC 4 cut(s) 145, 245, 413, 551
Tru1I TTAA 2 cut(s) 648, 1326
Tru9I TTAA 2 cut(s) 648, 1326
TscAI CASTG 6 cut(s) 25, 256, 592, 874, 1093, 1263
TseFI GTSAC 4 cut(s) 198, 393, 722, 1349
TseI GCWGC 8 cut(s) 233, 360, 782, 809, 930, 1031, 1061, 1179
Tsp45I GTSAC 4 cut(s) 198, 393, 722, 1349
TspDTI ATGAA 3 cut(s) 465, 997, 1146
TspGWI ACGGA 4 cut(s) 685, 710, 860, 1136
TspRI CASTG 6 cut(s) 25, 256, 592, 874, 1093, 1263
Vha464I CTTAAG 1 cut(s) 1325
VpaK11BI GGWCC 2 cut(s) 210, 983
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 1 cut(s) 454
XceI RCATGY 1 cut(s) 465
XmiI GTMKAC 2 cut(s) 1013, 1048
XmnI GAANNNNTTC 1 cut(s) 1154
XspI CTAG 2 cut(s) 114, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.