FvH4_2g00260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001195
Physical Location & Seq
Forward (+)
383335 .. 384678
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00260.t1

Sequence Viewer

Length: 243 bp
ATGGCTGGAACCGACGCGAGATGCAAGGGAGATGTAAGAAAGCTAGCCCTCTTCTTTGAGAAACTCGGCGCCTCTTCTCCTCCTGACATGAAAGAAGGCAAGGACCCCGTCTATATTCCAGAATCATCATCAGGAATGACTTATTCTCCAACTGCTCCTTCCTGGGTTTGTGGAGACATGAAAGAAGGCAAGGACATGAACATAGGCACACCTTGTTGGAAGCCTACTTCGTGGACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.7

Weight (kDa)

6.15

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccII CGCG 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 69
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 103, 234
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 2 cut(s) 103, 234
BanI GGYRCC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 2 cut(s) 103, 234
BmgT120I GGNCC 2 cut(s) 103, 234
BmiI GGNNCC 4 cut(s) 10, 70, 105, 236
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 11
BmtI GCTAGC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 168
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 4 cut(s) 10, 70, 105, 236
BspOI GCTAGC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 56, 79
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 45
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 103, 234
CseI GACGC 1 cut(s) 23
CviAII CATG 3 cut(s) 88, 178, 196
CviJI RGCY 4 cut(s) 5, 43, 47, 223
CviKI_1 RGCY 4 cut(s) 5, 43, 47, 223
DinI GGCGCC 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 56, 79
EarI CTCTTC 2 cut(s) 56, 79
Eco47I GGWCC 2 cut(s) 103, 234
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
FaeI CATG 3 cut(s) 91, 181, 199
FaiI YATR 5 cut(s) 89, 114, 179, 197, 203
FatI CATG 3 cut(s) 87, 177, 195
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 72
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 91, 181, 199
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 234
Hpy188III TCNNGA 3 cut(s) 83, 119, 132
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 89, 168, 179
HpyCH4V TGCA 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 91, 181, 199
HspAI GCGC 1 cut(s) 69
KasI GGCGCC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 96, 117, 132, 148, 175
LweI GCATC 1 cut(s) 11
MaeI CTAG 1 cut(s) 44
MboII GAAGA 2 cut(s) 43, 66
Mly113I GGCGCC 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 173, 197
MnlI CCTC 3 cut(s) 59, 82, 90
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 17
NarI GGCGCC 1 cut(s) 69
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 3 cut(s) 91, 181, 199
NlaIV GGNNCC 4 cut(s) 10, 70, 105, 236
NmeAIII GCCGAG 1 cut(s) 45
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 107
PluTI GGCGCC 1 cut(s) 72
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 4 cut(s) 10, 70, 105, 236
PspPI GGNCC 2 cut(s) 103, 234
PspPPI RGGWCCY 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 107
Sau96I GGNCC 2 cut(s) 103, 234
ScrFI CCNGG 1 cut(s) 163
SetI ASST 2 cut(s) 45, 214
SfaNI GCATC 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 70
SinI GGWCC 2 cut(s) 103, 234
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 161
TfiI GAWTC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 104, 194, 212
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 103, 234
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.