Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

63292770 .. 63293231

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG393600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACAAAGCAGTGCCTTGCAATGAGTGTTCTAAGGAGCACCCCCCTTATTCTTTTTGCCCTTACGCGCCTTGTCATATTTGTTATAAGGTTCACCACCATAGTTATTGCCCTTACTTTGACCATATCCCACAGGGTGCAACTTTTGACTCTGGCTATCAAATAATTTGTGGATGTGGTAGTGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTGTGGTGGGAGCAGAGCAATGCTTAAGGCCAAGTATTGTAACATTTGTAACAGTGTGAAACAGCACCGCGCATATGAATGCCCGAAGGACAAGGTTCTTGCCGCCAAGTATAAATTGGCCAGGGACAAGAGGTGTTCAGTTGTGCAAAATAGGATTCCCTATGACATTGCCTATATACCAGAATCATCATCAGAAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.31

Weight (kDa)

8.32

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccII	CGCG	2 cut(s)	68, 285
AciI	CCGC	2 cut(s)	283, 318
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflII	CTTAAG	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	335, 436
Alw21I	GWGCWC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	243, 333
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	70, 287
AsuHPI	GGTGA	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	337, 438
BfrI	CTTAAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	337, 438
BmrFI	CCNGG	2 cut(s)	337, 438
BsaJI	CCNNGG	2 cut(s)	336, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse3DI	GCAATG	3 cut(s)	28, 240, 381
BseBI	CCWGG	2 cut(s)	337, 438
BseDI	CCNNGG	2 cut(s)	336, 437
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	3 cut(s)	28, 240, 381
BseRI	GAGGAG	2 cut(s)	420, 423
Bsh1236I	CGCG	2 cut(s)	68, 285
BshFI	GGCC	2 cut(s)	245, 335
BsiHKAI	GWGCWC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	245, 335
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	283, 318
BspANI	GGCC	2 cut(s)	245, 335
BspFNI	CGCG	2 cut(s)	68, 285
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	3 cut(s)	28, 240, 381
BssECI	CCNNGG	2 cut(s)	336, 437
BssMI	GATC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	337, 438
Bst4CI	ACNGT	1 cut(s)	269
BstAFI	CTTAAG	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	2 cut(s)	68, 285
BstHHI	GCGC	2 cut(s)	70, 287
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstNI	CCWGG	2 cut(s)	337, 438
BstSCI	CCNGG	2 cut(s)	335, 436
BstUI	CGCG	2 cut(s)	68, 285
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	245, 335
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 274
CfoI	GCGC	2 cut(s)	70, 287
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	459
CviJI	RGCY	3 cut(s)	156, 245, 335
CviKI_1	RGCY	3 cut(s)	156, 245, 335
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	335, 436
FaeI	CATG	1 cut(s)	462
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	318
GlaI	GCGC	2 cut(s)	69, 286
GluI	GCNGC	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	245, 335
HhaI	GCGC	2 cut(s)	70, 287
Hin1II	CATG	1 cut(s)	462
Hin6I	GCGC	2 cut(s)	68, 285
HinP1I	GCGC	2 cut(s)	68, 285
HinfI	GANTC	3 cut(s)	149, 370, 398
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	94, 452
Hpy188I	TCNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	94, 452
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	21, 140, 361
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	462
HspAI	GCGC	2 cut(s)	68, 285
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	37, 225
LpnPI	CCDG	7 cut(s)	119, 138, 322, 349, 408, 423, 450
MaeIII	GTNAC	2 cut(s)	254, 263
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	165, 185, 329
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	5 cut(s)	187, 223, 339, 441, 444
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	189, 240
MslI	CAYNNNNRTG	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	335
MspCI	CTTAAG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	337, 438
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	2 cut(s)	337, 438
MvnI	CGCG	2 cut(s)	68, 285
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	1 cut(s)	462
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	370, 398
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	335, 436
PspGI	CCWGG	2 cut(s)	335, 436
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	189, 240
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	337, 438
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	93, 215, 312, 350
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	165, 185, 329
SsiI	CCGC	2 cut(s)	283, 318
StyD4I	CCNGG	2 cut(s)	335, 436
TaaI	ACNGT	1 cut(s)	269
TasI	AATT	3 cut(s)	165, 185, 329
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	370, 398
Tru1I	TTAA	2 cut(s)	189, 240
Tru9I	TTAA	2 cut(s)	189, 240
TscAI	CASTG	2 cut(s)	18, 274
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	18, 274
Vha464I	CTTAAG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.