RLG00000035232

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001195
Physical Location & Seq
Reverse (-)
63256735 .. 63258339
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035232

Sequence Viewer

Length: 753 bp
ATGGCTGGACCCGACGCAAGCTGTGTGGATGAGATCTGCCAGGGAGATGAAATGGTTTCAAAAGGCGTAAGAAACCTAGCCGTCTTCTTTGAGACTCTCGGCGCCTCTTCTCCGGATACAAGGAAACAGTTCAGTTTCAGGGCCCGGGCACCTAGTTCTAAAACCAGCAATCGAAAAGGTTGCGGAGGATCCGCTGGTTCAGGCACCTATACCTATACTCCTGTCGACTTCAGGTCCAAGTTCAGAGGACCAGTGGCTGGTGGAGATGCTTCTATGGACAAAGCAGTGCCTTGCAATGAGTGTTCAAAGGAGCATCCCCCTTATTCTTATTGCCCTTACAGACCTTACAGGCCTTGTCGTATTTGTTATAAGGTTCACCACCCTAGTGATTGCCCTTACTTCGACCATATCCCACAGGGTGCAACTTTTGACTGTGGCTATGAAATAATTTGTGGATGTGGTAATGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTGTGGTGGGAGCAGAGCACGTGAAACAGCACGGCACGTGAAACAGCACGGCACATATGAATGCCCGAAGGACAAGGTTCTTGCTGCCGAGTATAAATTGGCCAGAGACCAGAGTCGTTCAGTTGTGCCGAATTTGATTCCTTATGACACTGTCTATCCAAAATCATCATCAAGAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACATGAAAGAAGGCATGCTTACTGGGTCTACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.49

Weight (kDa)

8.63

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AccB1I GGYRCC 3 cut(s) 101, 148, 203
AccB7I CCANNNNNTGG 1 cut(s) 257
AccI GTMKAC 2 cut(s) 225, 743
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 2 cut(s) 183, 192
AclWI GGATC 2 cut(s) 183, 196
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 467, 628
AcuI CTGAAG 1 cut(s) 214
AcvI CACGTG 2 cut(s) 518, 535
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 2 cut(s) 257, 698
AgsI TTSAA 2 cut(s) 60, 306
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 39, 697
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 2 cut(s) 86, 597
AlwI GGATC 2 cut(s) 183, 196
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 3 cut(s) 141, 350, 597
ApaI GGGCCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 2 cut(s) 467, 628
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 5 cut(s) 8, 141, 142, 234, 248
AsuC2I CCSGG 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 3 cut(s) 8, 234, 248
BaeGI GKGCMC 2 cut(s) 145, 151
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 3 cut(s) 101, 148, 203
BanII GRGCYC 1 cut(s) 145
BbrPI CACGTG 2 cut(s) 518, 535
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 1 cut(s) 568
BceAI ACGGC 3 cut(s) 65, 545, 562
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 2 cut(s) 41, 699
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 145, 146
BcoDI GTCTC 2 cut(s) 86, 597
BfaI CTAG 3 cut(s) 77, 153, 384
BfoI RGCGCY 1 cut(s) 105
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 2 cut(s) 33, 675
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 4 cut(s) 41, 145, 146, 699
Bme18I GGWCC 3 cut(s) 8, 234, 248
BmeRI GACNNNNNGTC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 5 cut(s) 8, 141, 142, 234, 248
BmiI GGNNCC 6 cut(s) 10, 103, 143, 150, 190, 205
BmrFI CCNGG 4 cut(s) 41, 145, 146, 699
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 256, 322
BmuI ACTGGG 1 cut(s) 747
BoxI GACNNNNGTC 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 145, 146
BsaAI YACGTR 2 cut(s) 518, 535
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 3 cut(s) 40, 144, 698
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 679, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 698
Bse1I ACTGG 2 cut(s) 251, 742
Bse3DI GCAATG 1 cut(s) 301
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 2 cut(s) 41, 699
BseDI CCNNGG 3 cut(s) 40, 144, 698
BseGI GGATG 3 cut(s) 34, 313, 461
BseLI CCNNNNNNNGG 2 cut(s) 257, 698
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 2 cut(s) 251, 742
BseRI GAGGAG 2 cut(s) 681, 684
BseSI GKGCMC 2 cut(s) 145, 151
BseXI GCAGC 1 cut(s) 568
BshFI GGCC 3 cut(s) 143, 352, 599
BshNI GGYRCC 3 cut(s) 101, 148, 203
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 113, 145
BslI CCNNNNNNNGG 2 cut(s) 257, 698
BsmAI GTCTC 2 cut(s) 86, 597
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 143, 352, 599
Bso31I GGTCTC 1 cut(s) 597
BsoBI CYCGRG 1 cut(s) 144
Bsp120I GGGCCC 1 cut(s) 141
Bsp1286I GDGCHC 3 cut(s) 145, 151, 517
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 3 cut(s) 33, 188, 675
BspACI CCGC 2 cut(s) 183, 192
BspANI GGCC 3 cut(s) 143, 352, 599
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 6 cut(s) 10, 103, 143, 150, 190, 205
BspPI GGATC 2 cut(s) 183, 196
BspT107I GGYRCC 3 cut(s) 101, 148, 203
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 2 cut(s) 251, 742
BssECI CCNNGG 3 cut(s) 40, 144, 698
BssMI GATC 3 cut(s) 33, 188, 675
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 41, 699
Bst4CI ACNGT 3 cut(s) 129, 434, 649
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 102
BstBAI YACGTR 2 cut(s) 518, 535
BstC8I GCNNGC 2 cut(s) 19, 731
BstF5I GGATG 3 cut(s) 34, 313, 461
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 36, 191, 678
BstMAI GTCTC 2 cut(s) 86, 597
BstMBI GATC 3 cut(s) 33, 188, 675
BstNI CCWGG 2 cut(s) 41, 699
BstNSI RCATGY 1 cut(s) 733
BstPAI GACNNNNGTC 1 cut(s) 609
BstSCI CCNGG 4 cut(s) 39, 143, 144, 697
BstSLI GKGCMC 2 cut(s) 145, 151
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 3 cut(s) 33, 188, 675
BstYI RGATCY 3 cut(s) 33, 188, 675
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 143, 352, 599
BtsCI GGATG 3 cut(s) 34, 313, 461
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 258, 291, 645
Cac8I GCNNGC 2 cut(s) 19, 731
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 5 cut(s) 8, 141, 142, 234, 248
Cfr9I CCCGGG 1 cut(s) 144
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 492
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 2 cut(s) 718, 730
CviJI RGCY 8 cut(s) 5, 21, 80, 143, 257, 352, 438, 599
CviKI_1 RGCY 8 cut(s) 5, 21, 80, 143, 257, 352, 438, 599
CviQI GTAC 1 cut(s) 492
DinI GGCGCC 1 cut(s) 103
DpnI GATC 3 cut(s) 35, 190, 677
DpnII GATC 3 cut(s) 33, 188, 675
DraIII CACNNNGTG 1 cut(s) 419
DriI GACNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 3 cut(s) 8, 234, 248
Eco57I CTGAAG 1 cut(s) 214
Eco72I CACGTG 2 cut(s) 518, 535
Eco88I CYCGRG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 39, 697
EcoT38I GRGCYC 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 2 cut(s) 721, 733
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FatI CATG 2 cut(s) 717, 729
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 2 cut(s) 225, 743
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 3 cut(s) 41, 300, 468
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 3 cut(s) 77, 153, 384
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 143, 352, 599
HapII CCGG 2 cut(s) 113, 145
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 721, 733
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 3 cut(s) 94, 610, 634
HpaII CCGG 2 cut(s) 113, 145
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 4 cut(s) 226, 376, 713, 744
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 2 cut(s) 113, 669
Hpy8I GTNNAC 4 cut(s) 226, 376, 713, 744
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 559, 719
HpyCH4III ACNGT 3 cut(s) 129, 434, 649
HpyCH4IV ACGT 2 cut(s) 517, 534
HpyCH4V TGCA 2 cut(s) 294, 422
HpySE526I ACGT 2 cut(s) 517, 534
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 721, 733
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 3 cut(s) 33, 188, 675
LmnI GCTCC 2 cut(s) 310, 507
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 2 cut(s) 256, 322
MaeI CTAG 3 cut(s) 77, 153, 384
MaeII ACGT 2 cut(s) 517, 534
MalI GATC 3 cut(s) 35, 190, 677
MboI GATC 3 cut(s) 33, 188, 675
MboII GAAGA 2 cut(s) 76, 99
MflI RGATCY 3 cut(s) 33, 188, 675
MhlI GDGCHC 3 cut(s) 145, 151, 517
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 4 cut(s) 447, 467, 593, 628
MluNI TGGCCA 1 cut(s) 599
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 88, 619
MmeI TCCRAC 1 cut(s) 710
MnlI CCTC 7 cut(s) 115, 179, 239, 469, 505, 702, 705
Mox20I TGGCCA 1 cut(s) 599
MroI TCCGGA 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 599
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 384, 556
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 113, 145
MspR9I CCNGG 4 cut(s) 41, 145, 146, 699
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 2 cut(s) 41, 699
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 2 cut(s) 145, 146
NdeI CATATG 1 cut(s) 553
NdeII GATC 3 cut(s) 33, 188, 675
NlaIII CATG 2 cut(s) 721, 733
NlaIV GGNNCC 6 cut(s) 10, 103, 143, 150, 190, 205
NmeAIII GCCGAG 2 cut(s) 78, 610
NspI RCATGY 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 384
PaeI GCATGC 1 cut(s) 733
PceI AGGCCT 1 cut(s) 352
PctI GAATGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 634
PflFI GACNNNGTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 2 cut(s) 88, 618
PluTI GGCGCC 1 cut(s) 105
PmaCI CACGTG 2 cut(s) 518, 535
PmlI CACGTG 2 cut(s) 518, 535
PpsI GAGTC 2 cut(s) 88, 618
Ppu21I YACGTR 2 cut(s) 518, 535
PshAI GACNNNNGTC 1 cut(s) 609
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 39, 697
PspCI CACGTG 2 cut(s) 518, 535
PspGI CCWGG 2 cut(s) 39, 697
PspN4I GGNNCC 6 cut(s) 10, 103, 143, 150, 190, 205
PspOMI GGGCCC 1 cut(s) 141
PspPI GGNCC 5 cut(s) 8, 141, 142, 234, 248
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 3 cut(s) 33, 188, 675
PsyI GACNNNGTC 1 cut(s) 647
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 2 cut(s) 384, 556
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 3 cut(s) 33, 188, 675
Sau96I GGNCC 5 cut(s) 8, 141, 142, 234, 248
SchI GAGTC 2 cut(s) 88, 619
ScrFI CCNGG 4 cut(s) 41, 145, 146, 699
SduI GDGCHC 3 cut(s) 145, 151, 517
SfaNI GCATC 2 cut(s) 256, 322
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 3 cut(s) 8, 234, 248
SmaI CCCGGG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 384, 556
SphI GCATGC 1 cut(s) 733
SrfI GCCCGGGC 1 cut(s) 146
Sse9I AATT 4 cut(s) 447, 467, 593, 628
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 2 cut(s) 183, 192
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 3 cut(s) 77, 153, 384
StuI AGGCCT 1 cut(s) 352
StyD4I CCNGG 4 cut(s) 39, 143, 144, 697
TaaI ACNGT 3 cut(s) 129, 434, 649
TaiI ACGT 2 cut(s) 520, 537
TaqI TCGA 3 cut(s) 172, 225, 402
TasI AATT 4 cut(s) 447, 467, 593, 628
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 3 cut(s) 258, 291, 652
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 5 cut(s) 63, 456, 480, 570, 734
TspMI CCCGGG 1 cut(s) 144
TspRI CASTG 3 cut(s) 258, 291, 652
Tth111I GACNNNGTC 1 cut(s) 647
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 3 cut(s) 8, 234, 248
XapI RAATTY 2 cut(s) 467, 628
XceI RCATGY 1 cut(s) 733
XmaI CCCGGG 1 cut(s) 144
XmiI GTMKAC 2 cut(s) 225, 743
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 77, 153, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.