Rorug05G0315800

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001195
Physical Location & Seq
Reverse (-)
37506555 .. 37507298
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0315800.1

Sequence Viewer

Length: 744 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTTGTAGGCGAAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAAGGAGTTAGGTCCCTAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGAATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATGATTGCTTTTAACGGACAGATGGGGAACTATGGCGGTTATGGATCCATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAGTTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCAAGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCAAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.44

Weight (kDa)

8.83

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 2.5e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 4 cut(s) 265, 447, 660, 739
AclWI GGATC 4 cut(s) 188, 382, 450, 463
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 4 cut(s) 220, 492, 553, 587
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 1 cut(s) 576
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 5 cut(s) 130, 193, 404, 694, 719
AluI AGCT 5 cut(s) 130, 193, 404, 694, 719
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 4 cut(s) 188, 382, 450, 463
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 514
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 153, 276
AsuHPI GGTGA 3 cut(s) 335, 566, 626
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BamHI GGATCC 1 cut(s) 455
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 256, 696
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 427, 644
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 578
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 480, 513
BfmI CTRYAG 2 cut(s) 102, 162
BisI GCNGC 2 cut(s) 51, 739
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 2 cut(s) 52, 740
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 5 cut(s) 6, 155, 337, 457, 737
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 107, 710
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 3 cut(s) 342, 510, 709
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 696
Bsp143I GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
Bsp1720I GCTNAGC 1 cut(s) 695
BspACI CCGC 4 cut(s) 265, 447, 660, 739
BspCNI CTCAG 3 cut(s) 343, 509, 708
BspLI GGNNCC 5 cut(s) 6, 155, 337, 457, 737
BspPI GGATC 4 cut(s) 188, 382, 450, 463
BspT107I GGYRCC 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 600, 668
Bst6I CTCTTC 2 cut(s) 266, 467
BstDEI CTNAG 3 cut(s) 351, 496, 695
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 7 cut(s) 109, 183, 213, 311, 377, 458, 574
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
BstMWI GCNNNNNNNGC 3 cut(s) 79, 401, 705
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 3 cut(s) 180, 374, 455
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 3 cut(s) 180, 374, 455
BtsCI GGATG 2 cut(s) 37, 292
BtsIMutI CAGTG 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 8 cut(s) 70, 293, 301, 460, 466, 532, 611, 634
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 3 cut(s) 351, 496, 695
DpnI GATC 7 cut(s) 108, 182, 212, 310, 376, 457, 573
DpnII GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
Eam1104I CTCTTC 2 cut(s) 266, 467
EarI CTCTTC 2 cut(s) 266, 467
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 256, 696
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 694
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 576
EcoT38I GRGCYC 2 cut(s) 256, 696
FaeI CATG 8 cut(s) 73, 296, 304, 463, 469, 535, 614, 637
FaqI GGGAC 1 cut(s) 139
FatI CATG 8 cut(s) 69, 292, 300, 459, 465, 531, 610, 633
Fnu4HI GCNGC 2 cut(s) 51, 739
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 696
Fsp4HI GCNGC 2 cut(s) 51, 739
FspBI CTAG 2 cut(s) 480, 513
GluI GCNGC 2 cut(s) 51, 739
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
Hin1II CATG 8 cut(s) 73, 296, 304, 463, 469, 535, 614, 637
HinfI GANTC 4 cut(s) 94, 117, 172, 355
HphI GGTGA 3 cut(s) 335, 566, 626
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 5 cut(s) 111, 177, 286, 374, 649
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 733
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyCH4III ACNGT 2 cut(s) 600, 668
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 304, 383, 610, 708
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 401, 705
HpyF3I CTNAG 3 cut(s) 351, 496, 695
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 8 cut(s) 73, 296, 304, 463, 469, 535, 614, 637
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
LmnI GCTCC 2 cut(s) 127, 735
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 392
MaeI CTAG 2 cut(s) 480, 513
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 662
MalI GATC 7 cut(s) 108, 182, 212, 310, 376, 457, 573
MboI GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
MboII GAAGA 7 cut(s) 280, 283, 369, 390, 484, 581, 649
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 180, 374, 455
MhlI GDGCHC 3 cut(s) 256, 300, 696
MluCI AATT 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 9 cut(s) 22, 29, 131, 171, 267, 497, 557, 610, 647
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 2 cut(s) 366, 423
MslI CAYNNNNRTG 2 cut(s) 464, 669
MspA1I CMGCKG 3 cut(s) 193, 404, 741
MspR9I CCNGG 1 cut(s) 578
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 3 cut(s) 79, 401, 705
NdeII GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
NlaIII CATG 8 cut(s) 73, 296, 304, 463, 469, 535, 614, 637
NlaIV GGNNCC 5 cut(s) 6, 155, 337, 457, 737
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 662
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 4 cut(s) 94, 117, 172, 355
PkrI GCNGC 2 cut(s) 52, 740
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 5 cut(s) 6, 155, 337, 457, 737
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 502, 534
PsuI RGATCY 3 cut(s) 180, 374, 455
PvuII CAGCTG 2 cut(s) 193, 404
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
RseI CAYNNNNRTG 2 cut(s) 464, 669
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 2 cut(s) 366, 423
SatI GCNGC 2 cut(s) 51, 739
Sau3AI GATC 7 cut(s) 106, 180, 210, 308, 374, 455, 571
Sau96I GGNCC 2 cut(s) 153, 276
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 3 cut(s) 256, 300, 696
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 2 cut(s) 464, 669
SmlI CTYRAG 2 cut(s) 122, 689
SmoI CTYRAG 2 cut(s) 122, 689
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 1 cut(s) 340
SsiI CCGC 4 cut(s) 265, 447, 660, 739
SspMI CTAG 2 cut(s) 480, 513
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 600, 668
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 741
TfiI GAWTC 4 cut(s) 94, 117, 172, 355
Tru1I TTAA 2 cut(s) 366, 423
Tru9I TTAA 2 cut(s) 366, 423
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 4 cut(s) 281, 476, 548, 650
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 603
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 2 cut(s) 480, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.