FvH4_2g00660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001195
Physical Location & Seq
Reverse (-)
700282 .. 700656
375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00660.t1

Sequence Viewer

Length: 375 bp
ATGCCAGTGCTTAAGGCCAAGTTTTGTTCCATTTGTAATATCGGGTATCAGCACAGTGTATATGAATGCCCAAAGGATATTGCTCTTGCTGCCAAGTATAAATCGGTTAGAGACAAGATGCTTTCACGTGTGCCGATTCCCTATCGCCCTGTCTATCCAGAATCATCATCAGGAATTCCCTATGTTCCAACTACTCCTTCCTCGTCGGTTTGTGGAGACATGAAAGAAGGCAAGGACCCCGTCTATATTCCAGAATCATCATCAGGAATGACCTATTCTCCAACTGCTCCTTCCTGGGTTTGTGGAGACATGAAAAAAGGCAAGGACATGAACATAGGCACACCTTGTTGGAAGCCTGTTTCGTGGACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.66

Weight (kDa)

8.88

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 174
AcvI CACGTG 1 cut(s) 128
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 127
AjnI CCWGG 1 cut(s) 293
AjuI GAANNNNNNNTTGG 4 cut(s) 181, 213, 274, 306
Alw26I GTCTC 3 cut(s) 105, 210, 300
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 235, 366
AvaII GGWCC 2 cut(s) 235, 366
BbrPI CACGTG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 3 cut(s) 105, 210, 300
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 2 cut(s) 235, 366
BmgT120I GGNCC 2 cut(s) 235, 366
BmiI GGNNCC 2 cut(s) 237, 368
BmrFI CCNGG 1 cut(s) 295
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse1I ACTGG 2 cut(s) 5, 370
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 5, 370
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 17
BsmAI GTCTC 3 cut(s) 105, 210, 300
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 17
BspANI GGCC 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 237, 368
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 5, 370
BssECI CCNNGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 56
BstAFI CTTAAG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 128
BstMAI GTCTC 3 cut(s) 105, 210, 300
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 12, 61
Cfr13I GGNCC 2 cut(s) 235, 366
CviAII CATG 3 cut(s) 220, 310, 328
CviJI RGCY 2 cut(s) 17, 355
CviKI_1 RGCY 2 cut(s) 17, 355
Eco47I GGWCC 2 cut(s) 235, 366
Eco72I CACGTG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 223, 313, 331
FaiI YATR 9 cut(s) 61, 63, 99, 183, 221, 246, 311, 329, 335
FatI CATG 3 cut(s) 219, 309, 327
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 17
Hin1II CATG 3 cut(s) 223, 313, 331
HinfI GANTC 3 cut(s) 136, 161, 254
Hpy166II GTNNAC 1 cut(s) 366
Hpy188III TCNNGA 4 cut(s) 158, 171, 251, 264
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 207, 221, 300
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 223, 313, 331
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 9 cut(s) 18, 156, 162, 171, 249, 264, 280, 307, 369
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 127
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 3 cut(s) 212, 305, 329
MnlI CCTC 1 cut(s) 211
MseI TTAA 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 3 cut(s) 223, 313, 331
NlaIV GGNNCC 2 cut(s) 237, 368
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 136, 161, 254
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 91
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 293
PspCI CACGTG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 237, 368
PspPI GGNCC 2 cut(s) 235, 366
PspPPI RGGWCCY 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 235, 366
ScrFI CCNGG 1 cut(s) 295
SetI ASST 3 cut(s) 130, 275, 346
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 2 cut(s) 235, 366
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 130
TasI AATT 1 cut(s) 174
TfiI GAWTC 3 cut(s) 136, 161, 254
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 12, 61
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 78, 236, 326, 344
TspRI CASTG 2 cut(s) 12, 61
Tth111I GACNNNGTC 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 235, 366
XapI RAATTY 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.