Rroxscaffold_1G00021900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001195
Physical Location & Seq
Forward (+)
26966951 .. 26968154
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021900.1

Sequence Viewer

Length: 642 bp
ATGGCTGGACCCGACGCAAGCTGTGTGGATGAGATGTGCCAGGGAGATGAAACTGTTTCAAAGGGCGTAAGAAACCTAGCCATCTTCTTTGAGACTCTAGGCGCCTCTTCTCCGGATACAAGGAAACAGTTCAGTTCCAGGGCCCGGGCACCTAGTTCTAAAACCAGCAATCGAAAAGGTTGCGGAGGATCCGCTGGGTCAGGAACCTATACCTATACTCCTGTCGACTTCAGGTCCAAGTTCAGGGGACCAGTGGCTGGTGGAGATGCTTCTATGGACAAAGCAGGTGCAACTTTTGACCATGGCTATGAAATAATTTGCGGATGTGGTAATGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTCTGGTGGGAGCAGAGCAGTGCTTAAGCCCAAGTATTGTTCCATTTGTAATAGCGTGAAACAGCACGGCACATATGAATGCCCAAAGGACAAGGTTCTTGCTGCCAAGTATAAATTGGCCAGAGACCAGAGGCGTTCAGTTGTGCCGAATTTGATTCCCTATGACACTGTTTATATTCCAAAATCATCCTCAGGAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACATGAAAGAAGGCATGGTGTCTGGGTCTACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.78

Weight (kDa)

9.05

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 101, 148
AccB7I CCANNNNNTGG 1 cut(s) 257
AccI GTMKAC 2 cut(s) 225, 632
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 3 cut(s) 183, 192, 321
AclWI GGATC 2 cut(s) 183, 196
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 2 cut(s) 335, 514
AcuI CTGAAG 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 4 cut(s) 144, 243, 257, 587
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 60
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 3 cut(s) 39, 137, 586
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 86, 483
AlwI GGATC 2 cut(s) 183, 196
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 2 cut(s) 141, 483
ApaI GGGCCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 335, 514
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 5 cut(s) 8, 141, 142, 234, 248
AsuC2I CCSGG 2 cut(s) 145, 146
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 3 cut(s) 8, 234, 248
AxyI CCTNAGG 1 cut(s) 556
BaeGI GKGCMC 2 cut(s) 145, 151
BalI TGGCCA 1 cut(s) 485
BamHI GGATCC 1 cut(s) 188
BanI GGYRCC 2 cut(s) 101, 148
BanII GRGCYC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 3 cut(s) 41, 139, 588
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 2 cut(s) 145, 146
BcoDI GTCTC 2 cut(s) 86, 483
BfaI CTAG 3 cut(s) 77, 98, 153
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 275
BfuI GTATCC 1 cut(s) 109
BglII AGATCT 1 cut(s) 564
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 5 cut(s) 41, 139, 145, 146, 588
Bme18I GGWCC 3 cut(s) 8, 234, 248
BmeRI GACNNNNNGTC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 5 cut(s) 8, 141, 142, 234, 248
BmiI GGNNCC 7 cut(s) 10, 103, 143, 150, 190, 205, 249
BmrFI CCNGG 5 cut(s) 41, 139, 145, 146, 588
BmsI GCATC 1 cut(s) 256
BpuMI CCSGG 2 cut(s) 145, 146
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 5 cut(s) 40, 138, 144, 301, 587
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 568, 598
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 243, 257, 587
Bse1I ACTGG 1 cut(s) 251
Bse21I CCTNAGG 1 cut(s) 556
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 3 cut(s) 41, 139, 588
BseDI CCNNGG 5 cut(s) 40, 138, 144, 301, 587
BseGI GGATG 3 cut(s) 34, 329, 551
BseLI CCNNNNNNNGG 4 cut(s) 144, 243, 257, 587
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 570, 573
BseSI GKGCMC 2 cut(s) 145, 151
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 2 cut(s) 143, 485
BshNI GGYRCC 2 cut(s) 101, 148
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 113, 145
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 4 cut(s) 144, 243, 257, 587
BsmAI GTCTC 2 cut(s) 86, 483
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 2 cut(s) 143, 485
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 144
Bsp120I GGGCCC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 145, 151
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 188, 564
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 3 cut(s) 183, 192, 321
BspANI GGCC 2 cut(s) 143, 485
BspCNI CTCAG 1 cut(s) 569
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 7 cut(s) 10, 103, 143, 150, 190, 205, 249
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 183, 196
BspT107I GGYRCC 2 cut(s) 101, 148
BspTI CTTAAG 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 483
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 5 cut(s) 40, 138, 144, 301, 587
BssMI GATC 2 cut(s) 188, 564
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 41, 139, 588
Bst4CI ACNGT 3 cut(s) 55, 129, 535
Bst6I CTCTTC 2 cut(s) 112, 370
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 556
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 34, 329, 551
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 191, 567
BstMAI GTCTC 2 cut(s) 86, 483
BstMBI GATC 2 cut(s) 188, 564
BstNI CCWGG 3 cut(s) 41, 139, 588
BstSCI CCNGG 5 cut(s) 39, 137, 143, 144, 586
BstSLI GKGCMC 2 cut(s) 145, 151
BstV1I GCAGC 1 cut(s) 454
BstX2I RGATCY 2 cut(s) 188, 564
BstYI RGATCY 2 cut(s) 188, 564
Bsu36I CCTNAGG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 143, 485
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 34, 329, 551
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 258, 390, 531
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 5 cut(s) 8, 141, 142, 234, 248
Cfr9I CCCGGG 1 cut(s) 144
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 3 cut(s) 302, 607, 619
CviJI RGCY 8 cut(s) 5, 21, 80, 143, 257, 306, 394, 485
CviKI_1 RGCY 8 cut(s) 5, 21, 80, 143, 257, 306, 394, 485
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 556
DinI GGCGCC 1 cut(s) 103
DpnI GATC 2 cut(s) 190, 566
DpnII GATC 2 cut(s) 188, 564
DriI GACNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 2 cut(s) 112, 370
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 2 cut(s) 112, 370
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 3 cut(s) 8, 234, 248
Eco57I CTGAAG 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 3 cut(s) 39, 137, 586
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 3 cut(s) 305, 610, 622
FaqI GGGAC 1 cut(s) 261
FatI CATG 3 cut(s) 301, 606, 618
FauNDI CATATG 1 cut(s) 439
FblI GTMKAC 2 cut(s) 225, 632
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 3 cut(s) 41, 336, 538
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 3 cut(s) 77, 98, 153
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 468
GsaI CCCAGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 143, 485
HapII CCGG 2 cut(s) 113, 145
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 305, 610, 622
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 94, 520
HpaII CCGG 2 cut(s) 113, 145
Hpy166II GTNNAC 3 cut(s) 226, 602, 633
Hpy188III TCNNGA 3 cut(s) 113, 201, 558
Hpy8I GTNNAC 3 cut(s) 226, 602, 633
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 608
HpyCH4III ACNGT 3 cut(s) 55, 129, 535
HpyCH4V TGCA 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 556
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 305, 610, 622
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 188, 564
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 256
MaeI CTAG 3 cut(s) 77, 98, 153
MalI GATC 2 cut(s) 190, 566
MboI GATC 2 cut(s) 188, 564
MboII GAAGA 3 cut(s) 76, 99, 357
MflI RGATCY 2 cut(s) 188, 564
MhlI GDGCHC 2 cut(s) 145, 151
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 4 cut(s) 315, 335, 479, 514
MluNI TGGCCA 1 cut(s) 485
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 8 cut(s) 115, 179, 337, 373, 489, 565, 591, 594
Mox20I TGGCCA 1 cut(s) 485
MroI TCCGGA 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 485
MseI TTAA 2 cut(s) 339, 390
MslI CAYNNNNRTG 2 cut(s) 306, 442
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 2 cut(s) 113, 145
MspR9I CCNGG 5 cut(s) 41, 139, 145, 146, 588
Mva1269I GAATGC 1 cut(s) 449
MvaI CCWGG 3 cut(s) 41, 139, 588
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 2 cut(s) 145, 146
NcoI CCATGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 439
NdeII GATC 2 cut(s) 188, 564
NlaIII CATG 3 cut(s) 305, 610, 622
NlaIV GGNNCC 7 cut(s) 10, 103, 143, 150, 190, 205, 249
PaqCI CACCTGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 3 cut(s) 39, 137, 586
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 3 cut(s) 39, 137, 586
PspN4I GGNNCC 7 cut(s) 10, 103, 143, 150, 190, 205, 249
PspOMI GGGCCC 1 cut(s) 141
PspPI GGNCC 5 cut(s) 8, 141, 142, 234, 248
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 188, 564
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 2 cut(s) 306, 442
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 339, 390
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 2 cut(s) 188, 564
Sau96I GGNCC 5 cut(s) 8, 141, 142, 234, 248
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 5 cut(s) 41, 139, 145, 146, 588
SduI GDGCHC 2 cut(s) 145, 151
SfaNI GCATC 1 cut(s) 256
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 3 cut(s) 8, 234, 248
SmaI CCCGGG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 306, 442
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SrfI GCCCGGGC 1 cut(s) 146
Sse9I AATT 4 cut(s) 315, 335, 479, 514
SsiI CCGC 3 cut(s) 183, 192, 321
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 3 cut(s) 77, 98, 153
StyD4I CCNGG 5 cut(s) 39, 137, 143, 144, 586
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 55, 129, 535
TaqI TCGA 2 cut(s) 172, 225
TasI AATT 4 cut(s) 315, 335, 479, 514
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 2 cut(s) 339, 390
Tru9I TTAA 2 cut(s) 339, 390
TscAI CASTG 3 cut(s) 258, 390, 538
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 5 cut(s) 63, 324, 348, 456, 623
TspMI CCCGGG 1 cut(s) 144
TspRI CASTG 3 cut(s) 258, 390, 538
Van91I CCANNNNNTGG 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 3 cut(s) 8, 234, 248
XapI RAATTY 2 cut(s) 335, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmaI CCCGGG 1 cut(s) 144
XmiI GTMKAC 2 cut(s) 225, 632
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 77, 98, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.