Rh5DG409200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001195
Physical Location & Seq
Reverse (-)
64820437 .. 64827002
6566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG409200.1

Sequence Viewer

Length: 633 bp
ATGGCTGGACCCGACGCAAGCTGTGTGGATGAGATCTGCCAGGGAGATGAAACTGTTTCAAAAGGCGTAAGAAACCTAGCCATCTTCTTTAAGACTCTCGGCGCCTCTTCTCCCGTTCCAAGTTCAGAGGACCAGTGGCTGGTGGAGGCCCTTCTATGGACAAAGCAGTGCCTTGCAATGAGTGTTCTAAGGAGCATGCACCCTCCTTATTCTTATTGCCCTTACGCGCCTTGTCATATTTGTTATAAGGTTGACCACCATGGTTATTGCCCTTACTTCGACCATGTCCCACAGGGTGCAACTTTTCACCATGGCTATGAAATAATTTGTGGATGTGGTAATGAATTTAATGAGGATAAGTGGGTTTGTACCTCTTGTGGTGGGAGCAGAGCAGTGCTTAAGACCAAGTGTTGTAAAATTTGTAATAGCGTGAATCAGCATGGCGCATATGAATGCCCGAAGGACAAGGTTCTTGCTGCTAAGTATAAATTGGCCAGAGACAAGAGGCGTTCAGTTGTGCCGAATAGGATTCCCTATGAAACTGTTTGTATTCCAAAATCATCATCAGAAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACATGAAAGAAGGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.29

Weight (kDa)

8.08

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 2 cut(s) 344, 417
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 139, 156, 596
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 2 cut(s) 39, 595
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 492
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 2 cut(s) 147, 492
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 2 cut(s) 344, 417
AspLEI GCGC 3 cut(s) 104, 229, 446
AspS9I GGNCC 3 cut(s) 8, 130, 148
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 8, 130
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 463
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 41, 597
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 398
BglII AGATCT 2 cut(s) 33, 573
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 41, 597
Bme18I GGWCC 2 cut(s) 8, 130
BmgT120I GGNCC 3 cut(s) 8, 130, 148
BmiI GGNNCC 2 cut(s) 10, 103
BmrFI CCNGG 2 cut(s) 41, 597
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 40, 259, 310, 596
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 156, 596
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 41, 597
BseDI CCNNGG 4 cut(s) 40, 259, 310, 596
BseGI GGATG 2 cut(s) 34, 338
BseLI CCNNNNNNNGG 3 cut(s) 139, 156, 596
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 579, 582
BseXI GCAGC 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 149, 494
BshNI GGYRCC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 139, 156, 596
BsmAI GTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 2 cut(s) 149, 494
Bsp143I GATC 2 cut(s) 33, 573
Bsp19I CCATGG 2 cut(s) 259, 310
BspANI GGCC 2 cut(s) 149, 494
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 10, 103
BspT107I GGYRCC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 40, 259, 310, 596
BssMI GATC 2 cut(s) 33, 573
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 259, 310
Bst2UI CCWGG 2 cut(s) 41, 597
Bst4CI ACNGT 2 cut(s) 55, 544
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 19, 197
BstDEI CTNAG 2 cut(s) 188, 480
BstDSI CCRYGG 2 cut(s) 259, 310
BstF5I GGATG 2 cut(s) 34, 338
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 3 cut(s) 104, 229, 446
BstKTI GATC 2 cut(s) 36, 576
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 2 cut(s) 33, 573
BstNI CCWGG 2 cut(s) 41, 597
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 39, 595
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 463
BstX2I RGATCY 2 cut(s) 33, 573
BstYI RGATCY 2 cut(s) 33, 573
BsuRI GGCC 2 cut(s) 149, 494
BtgI CCRYGG 2 cut(s) 259, 310
BtsCI GGATG 2 cut(s) 34, 338
BtsI GCAGTG 2 cut(s) 173, 399
BtsIMutI CAGTG 3 cut(s) 140, 173, 399
Cac8I GCNNGC 2 cut(s) 19, 197
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 3 cut(s) 104, 229, 446
Cfr13I GGNCC 3 cut(s) 8, 130, 148
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 6 cut(s) 196, 260, 284, 311, 440, 616
CviJI RGCY 8 cut(s) 5, 21, 80, 139, 149, 315, 494, 627
CviKI_1 RGCY 8 cut(s) 5, 21, 80, 139, 149, 315, 494, 627
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 188, 480
DinI GGCGCC 1 cut(s) 103
DpnI GATC 2 cut(s) 35, 575
DpnII GATC 2 cut(s) 33, 573
DraIII CACNNNGTG 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 259, 310
Eco47I GGWCC 2 cut(s) 8, 130
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 39, 595
EcoT14I CCWWGG 2 cut(s) 259, 310
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 259, 310
FaeI CATG 6 cut(s) 199, 263, 287, 314, 443, 619
FaqI GGGAC 1 cut(s) 272
FatI CATG 6 cut(s) 195, 259, 283, 310, 439, 615
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 2 cut(s) 41, 345
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 1 cut(s) 77
GlaI GCGC 3 cut(s) 103, 228, 445
GluI GCNGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 149, 494
HgaI GACGC 1 cut(s) 23
HhaI GCGC 3 cut(s) 104, 229, 446
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 6 cut(s) 199, 263, 287, 314, 443, 619
Hin6I GCGC 3 cut(s) 102, 227, 444
HinP1I GCGC 3 cut(s) 102, 227, 444
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 94, 433, 529
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 253, 611
Hpy188I TCNGA 2 cut(s) 127, 568
Hpy8I GTNNAC 2 cut(s) 253, 611
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 161, 454, 617
HpyCH4III ACNGT 2 cut(s) 55, 544
HpyCH4V TGCA 3 cut(s) 176, 199, 299
HpyF3I CTNAG 2 cut(s) 188, 480
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 6 cut(s) 199, 263, 287, 314, 443, 619
HspAI GCGC 3 cut(s) 102, 227, 444
KasI GGCGCC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 33, 573
LmnI GCTCC 2 cut(s) 192, 384
LpnPI CCDG 8 cut(s) 26, 53, 125, 146, 278, 508, 582, 609
Lsp1109I GCAGC 1 cut(s) 463
MaeI CTAG 1 cut(s) 77
MalI GATC 2 cut(s) 35, 575
MboI GATC 2 cut(s) 33, 573
MboII GAAGA 2 cut(s) 76, 99
MflI RGATCY 2 cut(s) 33, 573
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 4 cut(s) 324, 344, 417, 488
MluNI TGGCCA 1 cut(s) 494
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 608
MnlI CCTC 9 cut(s) 115, 121, 139, 213, 346, 382, 498, 600, 603
Mox20I TGGCCA 1 cut(s) 494
MscI TGGCCA 1 cut(s) 494
MseI TTAA 3 cut(s) 90, 348, 399
MslI CAYNNNNRTG 2 cut(s) 315, 451
Msp20I TGGCCA 1 cut(s) 494
MspCI CTTAAG 1 cut(s) 398
MspR9I CCNGG 2 cut(s) 41, 597
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 2 cut(s) 41, 597
MvnI CGCG 1 cut(s) 227
NarI GGCGCC 1 cut(s) 102
NcoI CCATGG 2 cut(s) 259, 310
NdeI CATATG 1 cut(s) 448
NdeII GATC 2 cut(s) 33, 573
NlaIII CATG 6 cut(s) 199, 263, 287, 314, 443, 619
NlaIV GGNNCC 2 cut(s) 10, 103
NmeAIII GCCGAG 1 cut(s) 78
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 433, 529
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 39, 595
PspGI CCWGG 2 cut(s) 39, 595
PspN4I GGNNCC 2 cut(s) 10, 103
PspPI GGNCC 3 cut(s) 8, 130, 148
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 2 cut(s) 33, 573
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 315, 451
SaqAI TTAA 3 cut(s) 90, 348, 399
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 2 cut(s) 33, 573
Sau96I GGNCC 3 cut(s) 8, 130, 148
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 41, 597
SetI ASST 5 cut(s) 23, 78, 252, 374, 471
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 2 cut(s) 8, 130
SmiMI CAYNNNNRTG 2 cut(s) 315, 451
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SphI GCATGC 1 cut(s) 199
Sse9I AATT 4 cut(s) 324, 344, 417, 488
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 39, 595
StyI CCWWGG 2 cut(s) 259, 310
TaaI ACNGT 2 cut(s) 55, 544
TaqI TCGA 1 cut(s) 279
TasI AATT 4 cut(s) 324, 344, 417, 488
TfiI GAWTC 2 cut(s) 433, 529
Tru1I TTAA 3 cut(s) 90, 348, 399
Tru9I TTAA 3 cut(s) 90, 348, 399
TscAI CASTG 3 cut(s) 140, 173, 399
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 6 cut(s) 63, 333, 357, 465, 552, 632
TspRI CASTG 3 cut(s) 140, 173, 399
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 139
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 8, 130
XapI RAATTY 2 cut(s) 344, 417
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.