Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

17483916 .. 17484362

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCATGTATATGGGGTTTGATGATCTTGGACCAGTGAGACCCGAAGAAGAAGCAAAGGTCGATTCTCAGGATCCAAAAAAAGAAGCGAGGCGTGCTCGAATCTGTAAAGCGGATGTGTGCTGGAACGGCGACGAGTACAAGATTTGTAATGTTTGTTCTGAGGAGCACTTAATGGGTTCTCTCTGCCCTTACTGGGAATGTGTCCCGCCGGGCGCAACTGTCGGCTCTCAATATCATGTAATTTGTCAGGGATGTGGTCGTATGATTCTCGATTGGTCTGAGACTTGGGTTTGCAATTATTGTTTTTCGGAACGAGCAAGGGTCTCTGAAAAGTCGTGCATCATTTGTGACACCTTTTATATGCACAATAGCACAGACTGCCCAGTCGACAAGGATAAAGCTGCCAAGTTCAAAAGCCTTCTCATAGCTTGTCGAGCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.82

Weight (kDa)

5.39

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	2 cut(s)	113, 209
AclWI	GGATC	2 cut(s)	68, 81
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	3 cut(s)	404, 431, 440
AluI	AGCT	3 cut(s)	404, 431, 440
Alw21I	GWGCWC	2 cut(s)	100, 171
Alw26I	GTCTC	3 cut(s)	34, 278, 331
AlwI	GGATC	2 cut(s)	68, 81
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	100, 171
BbvI	GCAGC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	34, 278, 331
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	2 cut(s)	205, 380
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	2 cut(s)	205, 380
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuMI	CCSGG	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	34, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	35, 200, 386
BseGI	GGATG	2 cut(s)	121, 260
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	3 cut(s)	83, 153, 273
BseNI	ACTGG	3 cut(s)	35, 200, 386
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	100, 171
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	3 cut(s)	34, 278, 331
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	34, 331
Bsp1286I	GDGCHC	2 cut(s)	100, 171
Bsp143I	GATC	2 cut(s)	25, 73
BspACI	CCGC	2 cut(s)	113, 209
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	82, 154, 274
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	68, 81
BspTNI	GGTCTC	2 cut(s)	34, 331
BsrI	ACTGG	3 cut(s)	35, 200, 386
BssMI	GATC	2 cut(s)	25, 73
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	69, 162, 282
BstF5I	GGATG	2 cut(s)	121, 260
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	28, 76
BstMAI	GTCTC	3 cut(s)	34, 278, 331
BstMBI	GATC	2 cut(s)	25, 73
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 129, 381, 437
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	121, 260
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	2 cut(s)	7, 239
CviJI	RGCY	6 cut(s)	5, 228, 404, 420, 431, 440
CviKI_1	RGCY	6 cut(s)	5, 228, 404, 420, 431, 440
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	3 cut(s)	69, 162, 282
DpnI	GATC	2 cut(s)	27, 75
DpnII	GATC	2 cut(s)	25, 73
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	2 cut(s)	34, 331
Eco47I	GGWCC	1 cut(s)	32
FaeI	CATG	2 cut(s)	10, 242
FaiI	YATR	9 cut(s)	8, 12, 14, 240, 266, 363, 365, 428, 443
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	6, 238
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	2 cut(s)	128, 267
Fsp4HI	GCNGC	1 cut(s)	405
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	10, 242
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	65, 102, 268
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	4 cut(s)	163, 283, 313, 331
Hpy188III	TCNNGA	2 cut(s)	71, 272
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	297, 342, 367
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 129, 381, 437
HpyF3I	CTNAG	3 cut(s)	69, 162, 282
Hsp92II	CATG	2 cut(s)	10, 242
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	25, 73
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	48, 56, 109, 181, 225, 236, 399
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	27, 75
MboI	GATC	2 cut(s)	25, 73
MboII	GAAGA	2 cut(s)	59, 62
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	100, 171
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	243, 298
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	84, 157
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	95, 129, 381, 437
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	25, 73
NlaIII	CATG	2 cut(s)	10, 242
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	65, 102, 268
PkrI	GCNGC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	32
PsrI	GAACNNNNNNTAC	2 cut(s)	142, 174
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	25, 73
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	100, 171
SetI	ASST	5 cut(s)	63, 359, 406, 433, 442
SfaNI	GCATC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	243, 298
SsiI	CCGC	2 cut(s)	113, 209
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	5 cut(s)	63, 100, 273, 390, 436
TasI	AATT	2 cut(s)	243, 298
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	3 cut(s)	65, 102, 268
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	350
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.