Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

497538 .. 498971

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTGCTGAAACCGACGCGAGATGCCAGGGAGACGTAAGAAAGCTATCCTTCTTCTTTGAGAAACTCGGCGCCTCTTCTCCTCCTGATACAAGAAAAAGTTCAGAAATCACCAATCGAAAAGGTTGCGGAGGATCCGCTGGTTCAGGCACCTGTACAGGCTGTACTCCTGTCGTCTCCATGGGGCTGAATGAGTTCAGACGACTGGTGGCTGGTGGAGAATCATCATCAGGAATTCCCTATGTTCCAACTACTCCTTCCTCGTTGGTTTGTGGAGACATGAAAGAAGGCAAGGACTCCGTCGATATTCCAGAAGTGTTGTCAGGAATGACCTATTCTCCAACTGCTCGTCCGGGGGTTTATGAAGACATGAACATAGGCACACCTTGGTGGAAGCCTATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.2

Weight (kDa)

5.44

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 149
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	129, 138
AclWI	GGATC	2 cut(s)	129, 142
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	2 cut(s)	157, 166
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AleI	CACNNNNGTG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	3 cut(s)	27, 181, 270
AlwI	GGATC	2 cut(s)	129, 142
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	234
Asp700I	GAANNNNTTC	2 cut(s)	100, 194
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	71, 149
BbsI	GAAGAC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	3 cut(s)	27, 181, 270
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	29, 354
BmiI	GGNNCC	3 cut(s)	73, 136, 151
BmrFI	CCNGG	2 cut(s)	29, 354
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	28, 180, 353, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	28, 180, 353, 386
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	20
BshNI	GGYRCC	2 cut(s)	71, 149
BsiSI	CCGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	27, 181, 270
BsmBI	CGTCTC	2 cut(s)	27, 181
Bsp1407I	TGTACA	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	129, 138
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	3 cut(s)	73, 136, 151
BspPI	GGATC	2 cut(s)	129, 142
BspT107I	GGYRCC	2 cut(s)	71, 149
BsrGI	TGTACA	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	4 cut(s)	28, 180, 353, 386
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	180, 386
Bst2UI	CCWGG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	3 cut(s)	27, 181, 270
BstMBI	GATC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	27, 352
BstUI	CGCG	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	180
CfoI	GCGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	156, 165
CviAII	CATG	3 cut(s)	181, 280, 370
CviJI	RGCY	6 cut(s)	5, 46, 162, 187, 212, 397
CviKI_1	RGCY	6 cut(s)	5, 46, 162, 187, 212, 397
CviQI	GTAC	2 cut(s)	156, 165
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	180, 386
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	180, 386
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	180, 386
Esp3I	CGTCTC	2 cut(s)	27, 181
FaeI	CATG	3 cut(s)	184, 283, 373
FaiI	YATR	6 cut(s)	182, 243, 281, 363, 371, 377
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	180, 279, 369
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	75
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	184, 283, 373
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	221, 296
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	106, 200
Hpy188III	TCNNGA	4 cut(s)	86, 231, 311, 324
Hpy99I	CGWCG	2 cut(s)	20, 305
HpyAV	CCTTC	3 cut(s)	61, 267, 281
HpyCH4IV	ACGT	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	184, 283, 373
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	134
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	3 cut(s)	46, 69, 377
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	1 cut(s)	234
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	272, 365
MnlI	CCTC	4 cut(s)	85, 93, 125, 271
MroXI	GAANNNNTTC	2 cut(s)	100, 194
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	29, 354
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	20
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	184, 283, 373
NlaIV	GGNNCC	3 cut(s)	73, 136, 151
NmeAIII	GCCGAG	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	388
PdmI	GAANNNNTTC	2 cut(s)	100, 194
PfeI	GAWTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	290
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	73, 136, 151
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	2 cut(s)	157, 166
RsaNI	GTAC	2 cut(s)	156, 165
RseI	CAYNNNNRTG	1 cut(s)	388
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	29, 354
SetI	ASST	6 cut(s)	39, 48, 127, 155, 335, 388
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	2 cut(s)	129, 138
SspDI	GGCGCC	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	27, 352
StyI	CCWWGG	2 cut(s)	180, 386
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	118, 303
TasI	AATT	1 cut(s)	234
TatI	WGTACW	2 cut(s)	155, 164
TfiI	GAWTC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	296, 378, 386
TspGWI	ACGGA	1 cut(s)	289
Tth111I	GACNNNGTC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	234
XmnI	GAANNNNTTC	2 cut(s)	100, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.