Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001195

Physical Location & Seq

Genomic Coordinates Reverse (-)

62996358 .. 62998081

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCTAAAGGCCAAGTATTGTAACATTTGTAAAAGCGTGAAACAGCACCGCGCATATGAATGCCCGAAGGACAAGGTTCTTGCTGCCAAGTATAAATTGGCCAGAGACAAGAGGCGTTCAGTTGTGCCGAATAGGATTCCATATCACATTGCCTATATACCAGAATCATCATCAGGAAAGATCTATGTTCCAACTCCTCCTCCTGGGTGGGTTTGTGGACACATGAAAGAAGGCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.99

Weight (kDa)

9.79

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00260 FvH4_2g00390 FvH4_2g00660 FvH4_2g00661 FvH4_2g00814 FvH4_2g00840 FvH4_2g00850 FvH4_2g00850 FvH4_2g00860 FvH4_2g07000 FvH4_4g12110 FvH4_4g12110 FvH4_4g12110 FvH4_4g24132 FvH4_4g30800 FvH4_4g36141 FvH4_4g36141 FvH4_4g36160 FvH4_4g36171 FvH4_4g36220 FvH4_4g36220 FvH4_5g38300
rosa_chinensis	RchiOBHm_Chr5g0058501 RchiOBHm_Chr5g0058551 RchiOBHm_Chr5g0058561
rosa_laevigata	RLG00000012322 RLG00000012324 RLG00000035232 RLG00000035233
rosa_multiflora	Rmu_sc0000367.1_g000136 Rmu_sc0000367.1_g000140 Rmu_sc0003525.1_g000013 Rmu_sc0003525.1_g000016 Rmu_sc0003525.1_g000020
rosa_roxburghii	Rroxscaffold_1G00021900 Rroxscaffold_1G00021920 Rroxscaffold_7G00206620
rosa_rugosa	Rorug05G0315800 Rorug05G0315900 Rorug06G0201600
rosa_samantha	Rh5AG381900 Rh5AG382100 Rh5AG382200 Rh5BG393600 Rh5BG393700 Rh5BG393800 Rh5BG393900 Rh5CG417700 Rh5CG417800 Rh5DG408900 Rh5DG409100 Rh5DG409200 Rh6BG320200 Rh6CG326200 Rh6DG312200
rosa_wichuraiana	Rw5G035970 Rw5G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	9, 99
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	99
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	186, 189
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	11, 101
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	11, 101
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	11, 101
BspFNI	CGCG	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	11, 101
CfoI	GCGC	1 cut(s)	53
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	3 cut(s)	11, 101, 234
CviKI_1	RGCY	3 cut(s)	11, 101, 234
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	226
FaiI	YATR	8 cut(s)	55, 57, 93, 142, 156, 158, 186, 224
FatI	CATG	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	11, 101
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	136, 164
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	61, 224
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	115, 159, 174, 189, 216
Lsp1109I	GCAGC	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MflI	RGATCY	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	1 cut(s)	95
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	105, 207, 210
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	226
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	136, 164
PkrI	GCNGC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	58
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	202
TasI	AATT	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	136, 164
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	72, 239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.