FvH4_2g00661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001195
Physical Location & Seq
Reverse (-)
700918 .. 701616
699 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00661.t1

Sequence Viewer

Length: 204 bp
ATGGCTGCTGAAACCGACGCGAGATGCCAGGGAGATGTAAGAAAGCTAGCCCTCTTCTTTGAGAAACTCGGCGCCTCTTCTCCTCCTGATACGAGAAAAAGTTCAGAAATCATCAATCGAAAAGCTTGCGGAGGATCCCCCGCTGGTTCAGGCACCTATACAGGCTATACTCCTGTTGTCTCCATGGGGCAGAATGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.04

Weight (kDa)

7.77

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 71, 152
AccII CGCG 1 cut(s) 20
AciI CCGC 2 cut(s) 129, 141
AclWI GGATC 2 cut(s) 129, 142
AcyI GRCGYC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 46, 125
AluI AGCT 2 cut(s) 46, 125
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 2 cut(s) 129, 142
ApeKI GCWGC 1 cut(s) 5
Asp700I GAANNNNTTC 2 cut(s) 100, 197
AspLEI GCGC 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 46
BamHI GGATCC 1 cut(s) 134
BanI GGYRCC 2 cut(s) 71, 152
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 73, 136, 154
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 28, 183
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 28, 183
BseRI GAGGAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 20
BshNI GGYRCC 2 cut(s) 71, 152
BsmAI GTCTC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 134
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 2 cut(s) 129, 141
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 73, 136, 154
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 129, 142
BspT107I GGYRCC 2 cut(s) 71, 152
BssECI CCNNGG 2 cut(s) 28, 183
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 59, 82
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 48, 127
BstDSI CCRYGG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 48, 127
CfoI GCGC 1 cut(s) 74
CseI GACGC 1 cut(s) 26
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 5, 46, 50, 125, 165
CviKI_1 RGCY 5 cut(s) 5, 46, 50, 125, 165
DinI GGCGCC 1 cut(s) 73
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eam1104I CTCTTC 2 cut(s) 59, 82
EarI CTCTTC 2 cut(s) 59, 82
Eco130I CCWWGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 159, 168, 185
FatI CATG 1 cut(s) 183
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 75
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 106, 203
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 134
LpnPI CCDG 7 cut(s) 14, 41, 99, 129, 135, 147, 186
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 47
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 2 cut(s) 46, 69
MflI RGATCY 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 72
MnlI CCTC 4 cut(s) 62, 85, 93, 125
MroXI GAANNNNTTC 2 cut(s) 100, 197
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 20
NarI GGCGCC 1 cut(s) 72
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 134
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 3 cut(s) 73, 136, 154
NmeAIII GCCGAG 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 100, 197
PkrI GCNGC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 73, 136, 154
PsuI RGATCY 1 cut(s) 134
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 29
SetI ASST 3 cut(s) 48, 127, 158
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 73
SsiI CCGC 2 cut(s) 129, 141
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 1 cut(s) 118
TseI GCWGC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 100, 197
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.